Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46927 * 305.00307 * 4 3 2 6 6 C 1.53000 * 109.47350 * 64.99894 * 4 3 2 7 7 C 1.50702 * 109.47289 * 185.00242 * 4 3 2 8 8 O 1.21291 * 119.99999 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99926 * 179.97438 * 7 4 3 10 10 C 1.39992 * 119.99720 * 175.48227 * 9 7 4 11 11 C 1.38921 * 120.00000 * 215.12602 * 10 9 7 12 12 C 1.38001 * 119.99816 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00423 * 359.97438 * 12 11 10 14 14 O 1.35771 * 120.00148 * 180.02562 * 13 12 11 15 15 C 1.34817 * 116.99964 * 354.64684 * 14 13 12 16 16 H 1.07995 * 120.00095 * 5.04775 * 15 14 13 17 17 C 1.38630 * 120.00036 * 185.03916 * 15 14 13 18 18 N 1.31578 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47190 * 89.99868 * 19 17 15 21 21 H 1.48500 * 109.47324 * 210.00000 * 19 17 15 22 22 H 1.48500 * 109.46548 * 329.99966 * 19 17 15 23 23 C 1.38906 * 119.99540 * 0.27347 * 13 12 11 24 24 C 1.37997 * 120.00528 * 359.45327 * 23 13 12 25 25 H 1.09007 * 109.46866 * 299.99516 * 1 2 3 26 26 H 1.09000 * 109.47564 * 59.99859 * 1 2 3 27 27 H 1.09005 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46866 * 240.00484 * 2 1 3 29 29 H 1.09003 * 109.47329 * 120.00606 * 2 1 3 30 30 H 1.08998 * 109.46974 * 60.00184 * 3 2 1 31 31 H 1.09003 * 109.47466 * 300.00522 * 3 2 1 32 32 H 1.08995 * 109.47079 * 300.00152 * 6 4 3 33 33 H 1.09002 * 109.47004 * 59.99869 * 6 4 3 34 34 H 1.08994 * 109.47475 * 179.97438 * 6 4 3 35 35 H 0.96996 * 120.00007 * 355.48943 * 9 7 4 36 36 H 1.07996 * 120.00442 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.00451 * 179.97438 * 12 11 10 38 38 H 0.96998 * 119.99639 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99615 * 179.72490 * 23 13 12 40 40 H 1.08006 * 120.00392 * 180.27505 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0795 0.8330 -1.3083 7 6 4.0724 2.8579 0.1232 8 8 3.2843 3.7763 0.2036 9 7 5.3975 3.1031 0.1447 10 6 5.8649 4.4225 0.1643 11 6 7.0341 4.7553 -0.5079 12 6 7.4951 6.0559 -0.4881 13 6 6.7897 7.0325 0.2036 14 8 7.2430 8.3121 0.2226 15 6 8.4386 8.5466 -0.3545 16 1 8.9520 7.7519 -0.8753 17 6 9.0091 9.8078 -0.2795 18 7 8.3839 10.7760 0.3554 19 14 10.6655 10.1329 -1.0797 20 1 10.4591 10.5815 -2.4802 21 1 11.3825 11.1897 -0.3219 22 1 11.4715 8.8857 -1.0731 23 6 5.6233 6.6986 0.8800 24 6 5.1592 5.3993 0.8556 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.7161 -0.1907 -1.3978 33 1 3.7158 1.4226 -2.1499 34 1 5.1694 0.8334 -1.3089 35 1 6.0273 2.3654 0.1465 36 1 7.5829 3.9961 -1.0453 37 1 8.4044 6.3147 -1.0103 38 1 8.7829 11.6585 0.4075 39 1 5.0773 7.4570 1.4215 40 1 4.2499 5.1407 1.3779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = -78.008068 kcal Electronic energy + Delta-G solvation = -20666.263954 eV Core-core repulsion = 17445.262928 eV Total energy + Delta-G solvation = -3221.001025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60375 -40.45066 -38.35481 -36.82595 -35.43934 -34.17805 -32.83205 -31.88557 -29.50054 -27.50527 -27.33954 -25.13258 -23.90828 -22.95255 -21.84027 -20.83087 -19.86187 -18.98184 -18.36319 -17.67686 -16.64914 -16.37129 -16.16167 -15.93453 -15.52296 -15.36400 -15.19472 -14.78735 -14.54291 -14.26500 -13.98869 -13.60430 -13.46438 -13.29970 -13.17126 -13.09055 -12.72338 -12.67754 -12.47252 -12.12882 -12.11284 -11.81755 -11.70858 -11.38024 -11.29931 -11.09671 -10.67947 -10.52026 -9.85819 -8.62160 -8.45556 -6.13386 0.50198 0.53953 1.36727 1.45293 1.54791 1.67576 2.16524 2.20039 2.82144 3.15177 3.50692 3.65710 3.82367 3.98946 4.04964 4.12383 4.32373 4.38728 4.41767 4.48493 4.59726 4.68301 4.76479 4.82561 4.93348 4.98644 5.05849 5.07090 5.14723 5.18618 5.26854 5.30938 5.32917 5.46067 5.47714 5.53485 5.56834 5.67568 6.02373 6.16680 6.57111 6.98345 7.27108 7.79167 8.77740 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049624 B = 0.002938 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.106113 B = 9527.401309 C = 9929.241319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.098 4.098 5 H 0.127 0.873 6 C -0.144 4.144 7 C 0.504 3.496 8 O -0.573 6.573 9 N -0.649 5.649 10 C 0.061 3.939 11 C -0.079 4.079 12 C -0.220 4.220 13 C 0.107 3.893 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.022 2.978 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.249 1.249 23 C -0.192 4.192 24 C -0.076 4.076 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.425 0.575 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.272 0.728 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -25.542 -2.694 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.140 4.140 4 C -0.119 4.119 5 H 0.145 0.855 6 C -0.201 4.201 7 C 0.294 3.706 8 O -0.451 6.451 9 N -0.296 5.296 10 C -0.033 4.033 11 C -0.099 4.099 12 C -0.240 4.240 13 C 0.057 3.943 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.841 3.159 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.172 1.172 23 C -0.212 4.212 24 C -0.096 4.096 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.264 0.736 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.573 -24.538 -2.507 25.526 hybrid contribution 0.654 0.834 -0.060 1.061 sum -5.919 -23.704 -2.568 24.567 Atomic orbital electron populations 1.21795 0.96042 1.02080 1.01446 1.21570 0.95816 0.94879 1.03305 1.21426 0.92670 0.98007 1.01854 1.21380 0.97407 0.90212 1.02864 0.85538 1.21870 1.02190 1.02090 0.93931 1.21711 0.81521 0.92979 0.74434 1.90694 1.56319 1.48045 1.50060 1.43231 1.07803 1.05740 1.72806 1.17440 0.97303 0.85656 1.02891 1.20860 0.95785 0.95633 0.97606 1.21144 1.03340 0.93465 1.06067 1.19866 0.94179 0.85305 0.94997 1.83959 1.36213 1.22730 1.70971 1.21882 0.94685 0.98422 1.33892 0.87564 1.26663 1.04052 0.93988 0.97647 1.70213 1.40773 1.02994 1.42165 0.84544 0.74489 0.79138 0.77759 1.18908 1.19831 1.17188 1.20272 0.97620 0.97419 1.05880 1.20852 0.99432 0.91336 0.97936 0.93412 0.93310 0.91507 0.90278 0.90713 0.93066 0.93152 0.88792 0.93553 0.90537 0.73608 0.82250 0.84940 0.91895 0.87200 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.33 5.69 30.59 0.17 -1.16 16 3 C -0.10 -1.76 4.03 30.59 0.12 -1.64 16 4 C -0.10 -1.47 2.72 -11.54 -0.03 -1.50 16 5 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 6 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 7 C 0.50 12.80 7.00 87.66 0.61 13.41 16 8 O -0.57 -20.45 13.36 -3.06 -0.04 -20.49 16 9 N -0.65 -15.34 5.20 -303.38 -1.58 -16.92 16 10 C 0.06 2.04 6.30 38.16 0.24 2.28 16 11 C -0.08 -2.62 9.96 22.38 0.22 -2.40 16 12 C -0.22 -9.43 9.16 22.38 0.20 -9.23 16 13 C 0.11 5.50 6.65 22.59 0.15 5.65 16 14 O -0.23 -14.25 9.75 -22.84 -0.22 -14.47 16 15 C -0.41 -24.04 9.48 67.91 0.64 -23.40 16 16 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.51 5.49 84.82 0.47 -1.04 16 18 N -0.92 -57.45 13.67 21.61 0.30 -57.15 16 19 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 C -0.19 -9.03 9.98 22.37 0.22 -8.80 16 24 C -0.08 -3.04 8.69 22.38 0.19 -2.85 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 0.68 6.56 -2.38 -0.02 0.66 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 1.09 7.96 -2.39 -0.02 1.07 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.60 6.56 -2.39 -0.02 0.58 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.59 7.67 -2.39 -0.02 0.57 16 35 H 0.42 6.19 8.38 -92.71 -0.78 5.42 16 36 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.13 5.56 5.63 -2.91 -0.02 5.54 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 40 H 0.13 5.22 6.22 -2.91 -0.02 5.20 16 Total: -1.00 -77.69 332.38 5.33 -72.36 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.27 Total: 24.74 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.58 Total: -32.75 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.28 Total: -74.07 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.26 Total: -34.96 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -77.69 5.33 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.650 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds