Wall clock time and date at job start Mon Mar 30 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47550 * 2 1 4 4 C 1.53001 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46761 * 55.00299 * 4 3 2 6 6 C 1.52995 * 109.47174 * 295.00146 * 4 3 2 7 7 C 1.50699 * 109.47181 * 175.00062 * 4 3 2 8 8 O 1.21294 * 119.99757 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99999 * 179.72800 * 7 4 3 10 10 C 1.39995 * 120.00081 * 175.77596 * 9 7 4 11 11 C 1.38922 * 120.00272 * 214.85120 * 10 9 7 12 12 C 1.38000 * 119.99982 * 179.74413 * 11 10 9 13 13 C 1.38913 * 120.00052 * 0.50371 * 12 11 10 14 14 O 1.35778 * 119.99630 * 179.74912 * 13 12 11 15 15 C 1.34820 * 116.99419 * 185.36244 * 14 13 12 16 16 H 1.07996 * 120.00035 * 354.95805 * 15 14 13 17 17 C 1.38632 * 119.99514 * 174.96480 * 15 14 13 18 18 N 1.31575 * 119.99824 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00340 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46949 * 90.00068 * 19 17 15 21 21 H 1.48499 * 109.47265 * 210.00157 * 19 17 15 22 22 H 1.48505 * 109.46846 * 330.00310 * 19 17 15 23 23 C 1.38902 * 119.99969 * 359.76946 * 13 12 11 24 24 C 1.38001 * 120.00497 * 359.97438 * 23 13 12 25 25 H 1.08999 * 109.46990 * 59.99734 * 1 2 3 26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 300.00466 * 1 2 3 28 28 H 1.09000 * 109.47358 * 240.00165 * 2 1 3 29 29 H 1.09008 * 109.47081 * 120.00077 * 2 1 3 30 30 H 1.09006 * 109.47031 * 59.99582 * 3 2 1 31 31 H 1.08999 * 109.47191 * 300.00142 * 3 2 1 32 32 H 1.09005 * 109.46937 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47402 * 299.99761 * 6 4 3 34 34 H 1.09001 * 109.47296 * 60.00070 * 6 4 3 35 35 H 0.97005 * 120.00198 * 355.77510 * 9 7 4 36 36 H 1.08007 * 119.99963 * 359.97366 * 11 10 9 37 37 H 1.08002 * 120.00206 * 180.25118 * 12 11 10 38 38 H 0.96998 * 120.00055 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99987 * 179.97438 * 23 13 12 40 40 H 1.08007 * 119.99890 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3082 7 6 4.0725 2.8578 -0.1232 8 8 3.2843 3.7763 -0.2035 9 7 5.3975 3.1036 -0.1386 10 6 5.8653 4.4073 -0.3423 11 6 7.0404 4.6207 -1.0519 12 6 7.4986 5.9061 -1.2571 13 6 6.7905 6.9861 -0.7452 14 8 7.2442 8.2504 -0.9429 15 6 6.5731 9.2446 -0.3274 16 1 5.6696 9.0265 0.2226 17 6 7.0428 10.5469 -0.4005 18 7 6.3882 11.5171 0.2006 19 14 8.6059 10.9240 -1.3513 20 1 8.2643 11.2314 -2.7635 21 1 9.2866 12.0940 -0.7407 22 1 9.5093 9.7462 -1.3057 23 6 5.6186 6.7723 -0.0309 24 6 5.1574 5.4873 0.1699 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1696 0.8326 1.3085 33 1 3.7159 1.4226 2.1499 34 1 3.7162 -0.1907 1.3978 35 1 6.0271 2.3772 -0.0085 36 1 7.5933 3.7809 -1.4461 37 1 8.4100 6.0724 -1.8123 38 1 6.7167 12.4283 0.1491 39 1 5.0682 7.6119 0.3675 40 1 4.2464 5.3212 0.7258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:11 Heat of formation + Delta-G solvation = -55.060756 kcal Electronic energy + Delta-G solvation = -20732.740710 eV Core-core repulsion = 17512.734754 eV Total energy + Delta-G solvation = -3220.005955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36271 -38.91291 -36.96594 -35.90958 -34.06877 -32.39569 -32.07014 -30.27990 -28.19038 -26.85994 -25.30005 -24.10311 -22.49244 -21.60513 -20.70822 -19.68943 -18.06576 -17.56274 -16.85625 -16.60919 -15.81135 -15.05357 -14.56838 -14.46220 -14.17738 -13.98732 -13.77617 -13.76360 -13.31224 -12.78104 -12.75305 -12.49838 -12.41166 -12.26132 -12.11697 -11.77983 -11.61704 -11.42913 -11.16541 -11.06336 -10.94556 -10.74363 -10.71834 -10.23441 -9.69559 -9.57444 -9.20511 -8.75386 -8.27721 -7.05113 -6.39628 -4.05544 2.00504 2.12806 2.83835 3.23883 3.25738 3.27901 3.40824 4.24888 4.45860 4.48933 4.56173 4.66592 4.85886 4.91018 4.99841 5.04802 5.12115 5.25076 5.40318 5.54651 5.55142 5.56607 5.63733 5.66071 5.73439 5.81714 5.92788 6.07447 6.09894 6.11966 6.19590 6.26668 6.60779 6.77447 6.91890 7.12146 7.31194 7.57150 7.69547 7.81462 8.04437 8.36729 8.95316 9.57174 10.68050 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.003137 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.326428 B = 8922.893429 C = 9388.121183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.109 4.109 5 H 0.096 0.904 6 C -0.147 4.147 7 C 0.508 3.492 8 O -0.524 6.524 9 N -0.663 5.663 10 C 0.043 3.957 11 C -0.097 4.097 12 C -0.178 4.178 13 C 0.151 3.849 14 O -0.217 6.217 15 C -0.388 4.388 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.207 4.207 24 C -0.067 4.067 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.136 0.864 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 -23.197 0.291 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.130 4.130 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.295 3.705 8 O -0.399 6.399 9 N -0.307 5.307 10 C -0.049 4.049 11 C -0.117 4.117 12 C -0.198 4.198 13 C 0.099 3.901 14 O -0.122 6.122 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.141 4.141 18 N -0.518 5.518 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.227 4.227 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.224 -22.217 0.147 22.615 hybrid contribution 0.865 0.002 -0.281 0.909 sum -3.359 -22.215 -0.134 22.468 Atomic orbital electron populations 1.21763 0.95768 1.01398 1.02113 1.21597 0.96051 0.96681 1.01931 1.21447 0.92158 0.96588 1.03804 1.21333 0.97997 0.93283 1.00420 0.88583 1.21847 1.01073 1.01405 0.96073 1.20743 0.82105 0.91393 0.76268 1.90715 1.55143 1.46030 1.48055 1.43279 1.07153 1.08634 1.71665 1.17351 0.98133 0.83587 1.05867 1.20355 0.96288 0.96183 0.98880 1.19984 1.02118 0.90101 1.07553 1.19145 0.92195 0.85200 0.93574 1.83564 1.52992 1.11773 1.63855 1.20782 1.08786 0.85171 1.31668 0.87584 1.24471 0.98882 0.94030 0.96675 1.69658 1.39605 1.00774 1.41715 0.86169 0.82484 0.78360 0.79807 1.19893 1.20835 1.18352 1.21234 0.98531 0.97294 1.05605 1.20912 0.99077 0.91034 0.97646 0.92642 0.92890 0.92643 0.92095 0.91795 0.91172 0.90964 0.92212 0.91889 0.91199 0.76411 0.86608 0.86090 0.91059 0.84601 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -0.89 5.69 -26.73 -0.15 -1.05 16 3 C -0.10 -0.98 4.03 -26.73 -0.11 -1.09 16 4 C -0.11 -1.00 2.73 -91.77 -0.25 -1.25 16 5 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -1.04 8.84 37.15 0.33 -0.71 16 7 C 0.51 6.99 7.00 -10.99 -0.08 6.92 16 8 O -0.52 -9.55 13.36 5.55 0.07 -9.48 16 9 N -0.66 -8.74 5.26 -9.82 -0.05 -8.79 16 10 C 0.04 0.75 6.30 -83.62 -0.53 0.22 16 11 C -0.10 -1.61 9.96 -39.42 -0.39 -2.00 16 12 C -0.18 -3.49 9.98 -39.42 -0.39 -3.88 16 13 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 14 O -0.22 -5.77 8.58 -0.01 0.00 -5.77 16 15 C -0.39 -11.11 9.94 30.88 0.31 -10.80 16 16 H 0.11 3.12 5.43 -52.49 -0.28 2.83 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.73 13.96 55.48 0.77 -24.96 16 19 Si 0.91 21.81 28.62 -169.99 -4.86 16.94 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.21 -4.71 9.16 -39.42 -0.36 -5.07 16 24 C -0.07 -1.35 8.69 -39.42 -0.34 -1.69 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 6.56 -51.92 -0.34 0.06 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 32 H 0.06 0.36 7.46 -51.93 -0.39 -0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.38 6.56 -51.93 -0.34 0.04 16 35 H 0.40 3.75 8.11 -40.82 -0.33 3.42 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.14 3.26 5.63 -52.49 -0.30 2.96 16 40 H 0.13 2.58 6.23 -52.48 -0.33 2.26 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -32.08 330.84 -6.70 -38.78 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.66 Total: 4.46 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.96 Total: -16.16 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.72 Total: -33.75 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.08 -6.70 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.284 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds