Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47550 * 2 1 4 4 C 1.53001 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46761 * 55.00299 * 4 3 2 6 6 C 1.52995 * 109.47174 * 295.00146 * 4 3 2 7 7 C 1.50699 * 109.47181 * 175.00062 * 4 3 2 8 8 O 1.21294 * 119.99757 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99999 * 179.72800 * 7 4 3 10 10 C 1.39995 * 120.00081 * 175.77596 * 9 7 4 11 11 C 1.38922 * 120.00272 * 214.85120 * 10 9 7 12 12 C 1.38000 * 119.99982 * 179.74413 * 11 10 9 13 13 C 1.38913 * 120.00052 * 0.50371 * 12 11 10 14 14 O 1.35778 * 119.99630 * 179.74912 * 13 12 11 15 15 C 1.34820 * 116.99419 * 185.36244 * 14 13 12 16 16 H 1.07996 * 120.00035 * 354.95805 * 15 14 13 17 17 C 1.38632 * 119.99514 * 174.96480 * 15 14 13 18 18 N 1.31575 * 119.99824 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00340 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46949 * 90.00068 * 19 17 15 21 21 H 1.48499 * 109.47265 * 210.00157 * 19 17 15 22 22 H 1.48505 * 109.46846 * 330.00310 * 19 17 15 23 23 C 1.38902 * 119.99969 * 359.76946 * 13 12 11 24 24 C 1.38001 * 120.00497 * 359.97438 * 23 13 12 25 25 H 1.08999 * 109.46990 * 59.99734 * 1 2 3 26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 300.00466 * 1 2 3 28 28 H 1.09000 * 109.47358 * 240.00165 * 2 1 3 29 29 H 1.09008 * 109.47081 * 120.00077 * 2 1 3 30 30 H 1.09006 * 109.47031 * 59.99582 * 3 2 1 31 31 H 1.08999 * 109.47191 * 300.00142 * 3 2 1 32 32 H 1.09005 * 109.46937 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47402 * 299.99761 * 6 4 3 34 34 H 1.09001 * 109.47296 * 60.00070 * 6 4 3 35 35 H 0.97005 * 120.00198 * 355.77510 * 9 7 4 36 36 H 1.08007 * 119.99963 * 359.97366 * 11 10 9 37 37 H 1.08002 * 120.00206 * 180.25118 * 12 11 10 38 38 H 0.96998 * 120.00055 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99987 * 179.97438 * 23 13 12 40 40 H 1.08007 * 119.99890 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3082 7 6 4.0725 2.8578 -0.1232 8 8 3.2843 3.7763 -0.2035 9 7 5.3975 3.1036 -0.1386 10 6 5.8653 4.4073 -0.3423 11 6 7.0404 4.6207 -1.0519 12 6 7.4986 5.9061 -1.2571 13 6 6.7905 6.9861 -0.7452 14 8 7.2442 8.2504 -0.9429 15 6 6.5731 9.2446 -0.3274 16 1 5.6696 9.0265 0.2226 17 6 7.0428 10.5469 -0.4005 18 7 6.3882 11.5171 0.2006 19 14 8.6059 10.9240 -1.3513 20 1 8.2643 11.2314 -2.7635 21 1 9.2866 12.0940 -0.7407 22 1 9.5093 9.7462 -1.3057 23 6 5.6186 6.7723 -0.0309 24 6 5.1574 5.4873 0.1699 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1696 0.8326 1.3085 33 1 3.7159 1.4226 2.1499 34 1 3.7162 -0.1907 1.3978 35 1 6.0271 2.3772 -0.0085 36 1 7.5933 3.7809 -1.4461 37 1 8.4100 6.0724 -1.8123 38 1 6.7167 12.4283 0.1491 39 1 5.0682 7.6119 0.3675 40 1 4.2464 5.3212 0.7258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = -75.535592 kcal Electronic energy + Delta-G solvation = -20733.628565 eV Core-core repulsion = 17512.734754 eV Total energy + Delta-G solvation = -3220.893811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65080 -40.56079 -38.45554 -36.85398 -35.46402 -34.39516 -32.87231 -31.90620 -29.73702 -27.50971 -27.21473 -25.14892 -24.01015 -22.89647 -21.79295 -20.78932 -19.88523 -19.26530 -18.27960 -17.90885 -16.81938 -16.41183 -15.91239 -15.75373 -15.64672 -15.56161 -15.27066 -14.87913 -14.45855 -14.23947 -14.18963 -13.93243 -13.50936 -13.39092 -13.25773 -13.11319 -12.74514 -12.73135 -12.48426 -12.13898 -12.01197 -11.83216 -11.72189 -11.49792 -11.39740 -11.12838 -10.74848 -10.57827 -9.88121 -8.69006 -8.50529 -6.23294 0.45478 0.49907 1.32015 1.36839 1.52984 1.65762 2.14262 2.28425 2.75114 3.01578 3.15444 3.63489 3.80504 3.97340 4.06187 4.08244 4.31109 4.37877 4.41109 4.44582 4.60723 4.62890 4.72353 4.81379 4.92359 4.97172 5.03082 5.05044 5.13183 5.18596 5.26398 5.31360 5.37143 5.45496 5.48440 5.52970 5.58891 5.73506 5.90186 6.18784 6.54783 6.82926 7.25869 7.55395 8.61477 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038541 B = 0.003137 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.326428 B = 8922.893429 C = 9388.121183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.097 4.097 5 H 0.128 0.872 6 C -0.144 4.144 7 C 0.503 3.497 8 O -0.574 6.574 9 N -0.649 5.649 10 C 0.069 3.931 11 C -0.079 4.079 12 C -0.167 4.167 13 C 0.112 3.888 14 O -0.240 6.240 15 C -0.401 4.401 16 H 0.074 0.926 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.084 4.084 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.427 0.573 36 H 0.175 0.825 37 H 0.145 0.855 38 H 0.285 0.715 39 H 0.103 0.897 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -27.680 -0.893 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.141 4.141 4 C -0.118 4.118 5 H 0.146 0.854 6 C -0.202 4.202 7 C 0.292 3.708 8 O -0.453 6.453 9 N -0.296 5.296 10 C -0.025 4.025 11 C -0.098 4.098 12 C -0.186 4.186 13 C 0.062 3.938 14 O -0.147 6.147 15 C -0.478 4.478 16 H 0.092 0.908 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.104 4.104 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.266 0.734 36 H 0.192 0.808 37 H 0.163 0.837 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.065 -26.793 -1.023 26.892 hybrid contribution 0.017 1.036 0.133 1.045 sum -2.047 -25.757 -0.890 25.854 Atomic orbital electron populations 1.21797 0.96113 1.02104 1.01396 1.21566 0.95763 0.94791 1.03376 1.21436 0.92844 0.98066 1.01737 1.21383 0.97287 0.90130 1.02974 0.85398 1.21887 1.02246 1.02198 0.93843 1.21751 0.81622 0.92971 0.74411 1.90718 1.56441 1.48122 1.49999 1.43241 1.07789 1.07501 1.71087 1.17518 0.97268 0.84699 1.03010 1.20881 0.95496 0.96629 0.96831 1.20424 1.02201 0.89898 1.06121 1.19684 0.93250 0.85316 0.95524 1.83502 1.53448 1.12438 1.65313 1.20678 1.08423 0.86545 1.32119 0.90824 1.25369 1.02423 0.93541 0.97765 1.69754 1.41715 1.01386 1.43850 0.85130 0.78094 0.78447 0.78492 1.19063 1.19225 1.18075 1.21118 0.99003 0.97622 1.06696 1.20901 0.99540 0.91166 0.98767 0.93519 0.91421 0.93345 0.90656 0.90147 0.93184 0.93333 0.90364 0.93520 0.88707 0.73359 0.80798 0.83681 0.90526 0.87869 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.35 5.69 30.59 0.17 -1.17 16 3 C -0.10 -1.83 4.03 30.59 0.12 -1.71 16 4 C -0.10 -1.45 2.73 -11.54 -0.03 -1.48 16 5 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 6 C -0.14 -1.46 8.84 71.98 0.64 -0.82 16 7 C 0.50 12.80 7.00 87.66 0.61 13.42 16 8 O -0.57 -21.12 13.36 -3.07 -0.04 -21.16 16 9 N -0.65 -14.70 5.26 -303.38 -1.59 -16.30 16 10 C 0.07 2.22 6.30 38.16 0.24 2.46 16 11 C -0.08 -2.26 9.96 22.38 0.22 -2.04 16 12 C -0.17 -6.14 9.98 22.38 0.22 -5.92 16 13 C 0.11 5.36 6.65 22.59 0.15 5.51 16 14 O -0.24 -13.24 8.58 -22.95 -0.20 -13.44 16 15 C -0.40 -24.49 9.94 67.91 0.68 -23.82 16 16 H 0.07 4.81 5.43 -2.91 -0.02 4.79 16 17 C 0.01 0.42 5.49 84.83 0.47 0.88 16 18 N -0.93 -56.95 13.96 21.61 0.30 -56.65 16 19 Si 0.98 45.91 28.62 68.60 1.96 47.87 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.22 -10.88 9.16 22.37 0.20 -10.68 16 24 C -0.08 -3.46 8.69 22.38 0.19 -3.27 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.68 6.56 -2.38 -0.02 0.67 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 32 H 0.08 0.53 7.46 -2.38 -0.02 0.51 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.55 6.56 -2.39 -0.02 0.54 16 35 H 0.43 5.53 8.11 -92.70 -0.75 4.78 16 36 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.10 5.58 5.63 -2.91 -0.02 5.56 16 40 H 0.12 5.07 6.23 -2.91 -0.02 5.05 16 Total: -1.00 -76.96 330.84 5.34 -71.62 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.30 Total: 17.96 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.61 Total: -29.91 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.29 Total: -72.94 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.24 Total: -34.60 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.96 Total: 47.87 kcal Total: -76.96 5.34 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.916 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds