Wall clock time and date at job start Mon Mar 30 2020 01:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47023 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47234 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99573 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99975 * 179.97438 * 6 5 4 9 9 C 1.39921 * 119.99877 * 174.78368 * 8 6 5 10 10 C 1.38965 * 120.03677 * 326.32563 * 9 8 6 11 11 C 1.38157 * 120.06801 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.13706 * 359.70116 * 11 10 9 13 13 C 1.38906 * 120.07315 * 0.55189 * 12 11 10 14 14 O 1.35748 * 120.03767 * 179.74321 * 13 12 11 15 15 C 1.34831 * 117.00041 * 173.82629 * 14 13 12 16 16 H 1.07995 * 120.00225 * 354.59241 * 15 14 13 17 17 C 1.38659 * 119.99714 * 174.59445 * 15 14 13 18 18 N 1.31558 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47218 * 120.00157 * 19 17 15 22 22 H 1.48497 * 109.47380 * 240.00174 * 19 17 15 23 23 C 1.38716 * 120.03490 * 146.34353 * 9 8 6 24 24 H 1.08998 * 109.47145 * 299.99678 * 1 2 3 25 25 H 1.09002 * 109.47304 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47131 * 240.00639 * 2 1 3 28 28 H 1.08996 * 109.47354 * 120.00901 * 2 1 3 29 29 H 1.09006 * 109.46540 * 60.00277 * 3 2 1 30 30 H 1.08997 * 109.47726 * 299.99913 * 3 2 1 31 31 H 1.08998 * 109.47156 * 60.00406 * 4 3 2 32 32 H 1.09002 * 109.47440 * 300.00180 * 4 3 2 33 33 H 1.08998 * 109.47197 * 59.99973 * 5 4 3 34 34 H 1.09002 * 109.46786 * 300.00124 * 5 4 3 35 35 H 0.96999 * 120.00281 * 354.77895 * 8 6 5 36 36 H 1.08000 * 119.96674 * 0.02638 * 10 9 8 37 37 H 1.08000 * 119.93094 * 179.97438 * 11 10 9 38 38 H 1.08006 * 119.96415 * 180.29447 * 12 11 10 39 39 H 0.96997 * 120.00343 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.06977 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.5870 2.8850 0.0013 7 8 6.1933 1.8346 0.0004 8 7 6.2608 4.0522 0.0013 9 6 7.6557 4.0547 0.1115 10 6 8.2948 3.0861 0.8760 11 6 9.6720 3.0883 0.9857 12 6 10.4185 4.0491 0.3310 13 6 9.7854 5.0231 -0.4305 14 8 10.5192 5.9699 -1.0692 15 6 9.8557 6.8063 -1.8926 16 1 8.8049 6.6513 -2.0877 17 6 10.5226 7.8656 -2.4891 18 7 11.8029 8.0542 -2.2520 19 14 9.6036 9.0240 -3.6305 20 1 8.1847 8.5976 -3.7309 21 1 9.6677 10.4057 -3.0899 22 1 10.2277 8.9901 -4.9776 23 6 8.4021 5.0242 -0.5421 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9336 0.9285 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.7163 3.3985 0.8913 34 1 3.7170 3.3990 -0.8887 35 1 5.7789 4.8905 -0.0751 36 1 7.7143 2.3309 1.3850 37 1 10.1664 2.3348 1.5808 38 1 11.4953 4.0453 0.4148 39 1 12.2695 8.7950 -2.6696 40 1 7.9077 5.7784 -1.1363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:52 Heat of formation + Delta-G solvation = -63.631867 kcal Electronic energy + Delta-G solvation = -20384.859792 eV Core-core repulsion = 17164.482165 eV Total energy + Delta-G solvation = -3220.377626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19915 -38.68625 -36.68247 -36.00435 -34.20209 -32.47751 -32.20807 -29.48957 -28.70749 -27.20062 -25.30480 -23.28614 -21.83013 -21.56563 -21.08510 -19.90877 -17.96978 -17.68486 -16.71100 -16.27639 -15.57426 -15.25320 -14.97477 -14.48143 -14.28508 -14.05845 -13.65621 -13.54992 -13.44562 -13.37074 -12.96187 -12.44856 -12.19005 -11.95111 -11.72875 -11.58252 -11.25446 -11.18570 -11.12241 -11.05119 -11.02494 -10.74678 -10.72617 -10.43892 -9.90743 -9.55074 -9.41361 -8.81394 -7.72909 -7.15816 -6.45858 -4.05490 1.97101 2.37247 2.87788 3.11101 3.11346 3.17040 3.28287 3.94923 4.50087 4.57061 4.63934 4.66023 4.91761 4.95377 5.08082 5.10662 5.27308 5.29719 5.34825 5.48910 5.53580 5.62418 5.73217 5.75291 5.79919 5.95983 5.99114 6.07730 6.07842 6.18288 6.26224 6.28464 6.63673 6.97662 6.99671 7.12562 7.30793 7.41767 7.71116 7.81753 7.98590 8.34132 8.99644 9.70360 10.72310 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.003222 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.376942 B = 8688.678151 C = 9820.154927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.140 4.140 6 C 0.508 3.492 7 O -0.521 6.521 8 N -0.672 5.672 9 C 0.180 3.820 10 C -0.206 4.206 11 C -0.063 4.063 12 C -0.201 4.201 13 C 0.168 3.832 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.257 4.257 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.716 -8.871 4.538 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.143 4.143 5 C -0.180 4.180 6 C 0.295 3.705 7 O -0.396 6.396 8 N -0.317 5.317 9 C 0.087 3.913 10 C -0.227 4.227 11 C -0.082 4.082 12 C -0.220 4.220 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.278 4.278 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.913 -9.422 4.471 20.727 hybrid contribution -0.741 1.166 -0.674 1.537 sum -18.654 -8.256 3.797 20.750 Atomic orbital electron populations 1.21781 0.96011 1.01517 1.01719 1.21525 0.95642 0.96930 1.02264 1.21640 0.95161 0.96954 1.02034 1.21363 0.94576 0.94605 1.03760 1.21707 0.91505 1.00306 1.04463 1.20830 0.90275 0.83540 0.75851 1.90718 1.70245 1.31103 1.47573 1.43585 1.06051 1.09348 1.72688 1.17432 0.81286 0.96705 0.95895 1.20530 0.94551 1.02294 1.05285 1.20532 0.93103 0.96892 0.97702 1.20250 0.99759 0.97459 1.04578 1.19093 0.89388 0.89460 0.90707 1.84018 1.34539 1.37952 1.51488 1.21315 0.95373 1.07676 1.22392 0.89234 1.25283 0.95961 0.97106 0.98192 1.70044 1.08186 1.29741 1.41730 0.85657 0.79034 0.79485 0.79270 1.19210 1.20158 1.20138 1.20830 0.93959 1.04497 1.08559 0.92817 0.92805 0.92876 0.91927 0.91946 0.91973 0.91942 0.91102 0.91140 0.88788 0.88856 0.75874 0.86418 0.86623 0.86375 0.92067 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.13 -0.91 5.93 -26.74 -0.16 -1.07 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.11 -1.00 4.50 -26.73 -0.12 -1.12 16 5 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16 6 C 0.51 7.30 7.56 -10.99 -0.08 7.22 16 7 O -0.52 -9.51 13.69 5.55 0.08 -9.44 16 8 N -0.67 -10.08 5.34 -9.88 -0.05 -10.13 16 9 C 0.18 3.48 6.27 -83.72 -0.52 2.96 16 10 C -0.21 -4.01 8.65 -39.34 -0.34 -4.35 16 11 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 12 C -0.20 -4.36 9.99 -39.36 -0.39 -4.76 16 13 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 14 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 15 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 16 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 19 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 C -0.26 -5.61 9.04 -39.20 -0.35 -5.96 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 4.72 8.82 -40.82 -0.36 4.36 16 36 H 0.12 2.23 6.44 -52.49 -0.34 1.90 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.76 5.72 -52.49 -0.30 2.46 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -32.73 337.90 -7.42 -40.15 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.90 Total: 6.05 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.37 Total: -17.54 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.71 Total: -34.56 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.73 -7.42 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.481 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds