Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47023 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47234 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99573 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99975 * 179.97438 * 6 5 4 9 9 C 1.39921 * 119.99877 * 174.78368 * 8 6 5 10 10 C 1.38965 * 120.03677 * 326.32563 * 9 8 6 11 11 C 1.38157 * 120.06801 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.13706 * 359.70116 * 11 10 9 13 13 C 1.38906 * 120.07315 * 0.55189 * 12 11 10 14 14 O 1.35748 * 120.03767 * 179.74321 * 13 12 11 15 15 C 1.34831 * 117.00041 * 173.82629 * 14 13 12 16 16 H 1.07995 * 120.00225 * 354.59241 * 15 14 13 17 17 C 1.38659 * 119.99714 * 174.59445 * 15 14 13 18 18 N 1.31558 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47218 * 120.00157 * 19 17 15 22 22 H 1.48497 * 109.47380 * 240.00174 * 19 17 15 23 23 C 1.38716 * 120.03490 * 146.34353 * 9 8 6 24 24 H 1.08998 * 109.47145 * 299.99678 * 1 2 3 25 25 H 1.09002 * 109.47304 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47131 * 240.00639 * 2 1 3 28 28 H 1.08996 * 109.47354 * 120.00901 * 2 1 3 29 29 H 1.09006 * 109.46540 * 60.00277 * 3 2 1 30 30 H 1.08997 * 109.47726 * 299.99913 * 3 2 1 31 31 H 1.08998 * 109.47156 * 60.00406 * 4 3 2 32 32 H 1.09002 * 109.47440 * 300.00180 * 4 3 2 33 33 H 1.08998 * 109.47197 * 59.99973 * 5 4 3 34 34 H 1.09002 * 109.46786 * 300.00124 * 5 4 3 35 35 H 0.96999 * 120.00281 * 354.77895 * 8 6 5 36 36 H 1.08000 * 119.96674 * 0.02638 * 10 9 8 37 37 H 1.08000 * 119.93094 * 179.97438 * 11 10 9 38 38 H 1.08006 * 119.96415 * 180.29447 * 12 11 10 39 39 H 0.96997 * 120.00343 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.06977 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.5870 2.8850 0.0013 7 8 6.1933 1.8346 0.0004 8 7 6.2608 4.0522 0.0013 9 6 7.6557 4.0547 0.1115 10 6 8.2948 3.0861 0.8760 11 6 9.6720 3.0883 0.9857 12 6 10.4185 4.0491 0.3310 13 6 9.7854 5.0231 -0.4305 14 8 10.5192 5.9699 -1.0692 15 6 9.8557 6.8063 -1.8926 16 1 8.8049 6.6513 -2.0877 17 6 10.5226 7.8656 -2.4891 18 7 11.8029 8.0542 -2.2520 19 14 9.6036 9.0240 -3.6305 20 1 8.1847 8.5976 -3.7309 21 1 9.6677 10.4057 -3.0899 22 1 10.2277 8.9901 -4.9776 23 6 8.4021 5.0242 -0.5421 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9336 0.9285 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.7163 3.3985 0.8913 34 1 3.7170 3.3990 -0.8887 35 1 5.7789 4.8905 -0.0751 36 1 7.7143 2.3309 1.3850 37 1 10.1664 2.3348 1.5808 38 1 11.4953 4.0453 0.4148 39 1 12.2695 8.7950 -2.6696 40 1 7.9077 5.7784 -1.1363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036681583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -83.776011 kcal Electronic energy + Delta-G solvation = -20385.733307 eV Core-core repulsion = 17164.482165 eV Total energy + Delta-G solvation = -3221.251142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56584 -40.36126 -38.23157 -36.82651 -35.63326 -34.24365 -33.17886 -31.04411 -30.31070 -28.09388 -27.24818 -24.31673 -23.51640 -22.67771 -21.79283 -21.24329 -19.77682 -19.27510 -18.02004 -17.17322 -17.13311 -16.74792 -16.26236 -15.94652 -15.76759 -15.52453 -15.21387 -14.63294 -14.51486 -14.28972 -14.10498 -14.00362 -13.56555 -13.27479 -12.86610 -12.77837 -12.69235 -12.56489 -12.39181 -12.08300 -11.87819 -11.80736 -11.66712 -11.51106 -11.35208 -11.23681 -10.86809 -10.68777 -9.36564 -8.88290 -8.46959 -6.15855 0.39089 0.67878 1.36133 1.44223 1.54482 1.64996 2.08755 2.18107 2.82965 3.16151 3.48005 3.67037 3.86291 4.04678 4.10994 4.29200 4.32700 4.33446 4.43047 4.46815 4.62524 4.67225 4.74995 4.78487 4.88392 4.97328 5.01174 5.07275 5.10568 5.13165 5.26240 5.38277 5.39243 5.47318 5.48310 5.55674 5.65563 5.66140 6.01192 6.16410 6.49298 6.97317 7.16227 7.76838 8.76280 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.003222 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.376942 B = 8688.678151 C = 9820.154927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.128 4.128 6 C 0.505 3.495 7 O -0.562 6.562 8 N -0.665 5.665 9 C 0.186 3.814 10 C -0.202 4.202 11 C -0.052 4.052 12 C -0.216 4.216 13 C 0.133 3.867 14 O -0.226 6.226 15 C -0.412 4.412 16 H 0.102 0.898 17 C -0.023 4.023 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.249 1.249 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.261 4.261 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.045 -9.072 4.789 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.167 4.167 6 C 0.295 3.705 7 O -0.440 6.440 8 N -0.311 5.311 9 C 0.091 3.909 10 C -0.222 4.222 11 C -0.071 4.071 12 C -0.235 4.235 13 C 0.082 3.918 14 O -0.133 6.133 15 C -0.488 4.488 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.172 1.172 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.283 4.283 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.262 0.738 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.304 -9.648 4.750 23.865 hybrid contribution 0.197 0.963 -0.591 1.147 sum -21.107 -8.685 4.160 23.200 Atomic orbital electron populations 1.21767 0.95115 1.01843 1.02152 1.21548 0.96439 0.96983 1.01740 1.21590 0.93252 0.97110 1.03115 1.21333 0.96158 0.94439 1.02201 1.21777 0.87082 1.00756 1.07128 1.21812 0.92247 0.82350 0.74045 1.90703 1.71504 1.32506 1.49303 1.43633 1.04232 1.10876 1.72379 1.17501 0.83514 0.95386 0.94453 1.20852 0.94880 1.02027 1.04467 1.20923 0.93105 0.96418 0.96642 1.20477 1.00262 0.97800 1.04990 1.19627 0.90774 0.89660 0.91747 1.83984 1.36245 1.39698 1.53334 1.21830 0.96079 1.08016 1.22899 0.88052 1.26613 0.96903 0.98711 0.99843 1.70191 1.10359 1.31157 1.44052 0.84514 0.78333 0.76757 0.76494 1.17177 1.19277 1.19640 1.20869 0.93214 1.05302 1.08916 0.92275 0.92441 0.92701 0.92653 0.92406 0.90679 0.90962 0.93007 0.92542 0.85729 0.86230 0.73767 0.85280 0.82903 0.86293 0.91815 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.11 -1.32 5.21 30.59 0.16 -1.16 16 4 C -0.10 -1.72 4.50 30.60 0.14 -1.58 16 5 C -0.13 -1.92 5.70 29.85 0.17 -1.75 16 6 C 0.51 13.23 7.56 87.66 0.66 13.89 16 7 O -0.56 -19.61 13.69 -3.05 -0.04 -19.65 16 8 N -0.67 -18.27 5.34 -303.56 -1.62 -19.89 16 9 C 0.19 6.94 6.27 38.14 0.24 7.18 16 10 C -0.20 -7.49 8.65 22.42 0.19 -7.29 16 11 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 12 C -0.22 -9.49 9.99 22.41 0.22 -9.27 16 13 C 0.13 6.71 6.64 22.56 0.15 6.86 16 14 O -0.23 -13.57 9.76 -22.73 -0.22 -13.79 16 15 C -0.41 -23.64 9.44 67.92 0.64 -23.00 16 16 H 0.10 5.30 5.30 -2.91 -0.02 5.28 16 17 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 18 N -0.92 -55.98 13.67 21.61 0.30 -55.69 16 19 Si 1.02 41.91 29.55 68.60 2.03 43.94 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.26 -11.43 9.04 22.51 0.20 -11.23 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 8.56 8.82 -92.71 -0.82 7.75 16 36 H 0.13 4.59 6.44 -2.91 -0.02 4.57 16 37 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 38 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.13 5.54 5.72 -2.91 -0.02 5.53 16 Total: -1.00 -74.77 337.90 5.03 -69.74 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.22 Total: 27.54 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.37 Total: -32.20 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -1.32 Total: -75.58 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.26 Total: -33.44 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -74.77 5.03 -69.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.033 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds