Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46888 * 2 1 4 4 C 1.53001 * 109.47052 * 239.99696 * 2 1 3 5 5 C 1.53003 * 109.46728 * 120.00001 * 2 1 3 6 6 C 1.50699 * 109.47121 * 60.00126 * 5 2 1 7 7 O 1.21289 * 120.00249 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99804 * 179.97438 * 6 5 2 9 9 C 1.39920 * 119.99730 * 174.78336 * 8 6 5 10 10 C 1.38953 * 120.03968 * 326.32006 * 9 8 6 11 11 C 1.38159 * 120.06829 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.14104 * 359.69760 * 11 10 9 13 13 C 1.38910 * 120.06397 * 0.55665 * 12 11 10 14 14 O 1.35749 * 120.02841 * 179.74325 * 13 12 11 15 15 C 1.34837 * 116.99834 * 173.82566 * 14 13 12 16 16 H 1.08000 * 119.99728 * 354.59101 * 15 14 13 17 17 C 1.38649 * 120.00104 * 174.60230 * 15 14 13 18 18 N 1.31557 * 120.00167 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99962 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00288 * 19 17 15 21 21 H 1.48500 * 109.46898 * 210.00558 * 19 17 15 22 22 H 1.48497 * 109.46956 * 330.00417 * 19 17 15 23 23 C 1.38723 * 120.03221 * 146.34153 * 9 8 6 24 24 H 1.08994 * 109.47394 * 300.00117 * 1 2 3 25 25 H 1.09003 * 109.47330 * 60.00290 * 1 2 3 26 26 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47306 * 299.99330 * 3 2 1 29 29 H 1.09001 * 109.47353 * 60.00395 * 3 2 1 30 30 H 1.08995 * 109.47264 * 299.99914 * 4 2 1 31 31 H 1.09002 * 109.46872 * 60.00363 * 4 2 1 32 32 H 1.09004 * 109.46673 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47086 * 300.00070 * 5 2 1 34 34 H 1.09002 * 109.46511 * 180.02562 * 5 2 1 35 35 H 0.96993 * 119.99779 * 354.78274 * 8 6 5 36 36 H 1.08007 * 119.96748 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.92847 * 179.97438 * 11 10 9 38 38 H 1.07996 * 119.96676 * 180.29592 * 12 11 10 39 39 H 0.96996 * 120.00446 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.06889 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2492 7 8 0.8399 -2.5387 0.3398 8 7 1.8635 -2.9721 2.2599 9 6 1.3098 -4.2558 2.3171 10 6 0.0158 -4.4762 1.8612 11 6 -0.5317 -5.7433 1.9179 12 6 0.2071 -6.7965 2.4221 13 6 1.4993 -6.5816 2.8843 14 8 2.2227 -7.6158 3.3843 15 6 3.5107 -7.3674 3.6965 16 1 3.9470 -6.4070 3.4647 17 6 4.2751 -8.3450 4.3148 18 7 5.5319 -8.1029 4.6189 19 14 3.5204 -10.0060 4.7161 20 1 3.7167 -10.9290 3.5693 21 1 4.1769 -10.5694 5.9230 22 1 2.0676 -9.8400 4.9748 23 6 2.0520 -5.3099 2.8296 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -0.2075 2.1392 34 1 3.1299 -0.7209 1.2495 35 1 2.4820 -2.6795 2.9474 36 1 -0.5625 -3.6560 1.4620 37 1 -1.5378 -5.9120 1.5633 38 1 -0.2219 -7.7868 2.4607 39 1 6.0666 -8.7867 5.0518 40 1 3.0579 -5.1412 3.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -47.229081 kcal Electronic energy + Delta-G solvation = -21266.609260 eV Core-core repulsion = 18046.942911 eV Total energy + Delta-G solvation = -3219.666348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51952 -39.01946 -37.26797 -36.04571 -34.25726 -32.37203 -29.97372 -29.15126 -27.71516 -27.29284 -27.22556 -25.21642 -22.39183 -21.79084 -20.10222 -19.10929 -17.95354 -17.68605 -16.87293 -15.67967 -15.58061 -15.10633 -14.74167 -14.48308 -14.39638 -14.21705 -13.85622 -13.61645 -13.20157 -12.81453 -12.49557 -12.29188 -12.23897 -12.12032 -11.90169 -11.77544 -11.35921 -11.26269 -11.02925 -10.95648 -10.84837 -10.75479 -10.70740 -10.28384 -9.80110 -9.51969 -9.29240 -8.85814 -7.80381 -7.30290 -6.43937 -4.11256 1.88351 2.26228 2.83101 3.21966 3.23457 3.28103 3.39469 4.22344 4.47731 4.52163 4.68601 4.70898 4.87296 5.06215 5.09648 5.32439 5.36761 5.41332 5.50813 5.62070 5.66299 5.78094 5.81882 5.90550 5.94145 6.01500 6.02767 6.12085 6.16615 6.20053 6.42558 6.45302 6.54639 6.89815 6.93209 7.18649 7.19275 7.55088 7.71775 7.76050 8.00760 8.33764 8.91580 9.53994 10.63790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003775 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.816188 B = 7415.894317 C = 8085.054896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.133 4.133 6 C 0.511 3.489 7 O -0.512 6.512 8 N -0.672 5.672 9 C 0.181 3.819 10 C -0.198 4.198 11 C -0.065 4.065 12 C -0.201 4.201 13 C 0.174 3.826 14 O -0.216 6.216 15 C -0.390 4.390 16 H 0.104 0.896 17 C 0.064 3.936 18 N -0.880 5.880 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.245 4.245 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.407 0.593 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 15.336 -5.465 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.212 4.212 5 C -0.173 4.173 6 C 0.300 3.700 7 O -0.388 6.388 8 N -0.316 5.316 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.084 4.084 12 C -0.221 4.221 13 C 0.121 3.879 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.267 4.267 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.243 0.757 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.572 14.791 -5.975 17.658 hybrid contribution 0.464 -0.410 0.664 0.908 sum -7.107 14.382 -5.311 16.898 Atomic orbital electron populations 1.22117 0.94080 1.04229 1.00685 1.20261 0.96411 0.94397 0.94043 1.21898 1.00890 0.95338 1.01785 1.22124 1.00066 1.03018 0.96007 1.21811 1.02613 0.92264 1.00624 1.20760 0.80501 0.87583 0.81198 1.90591 1.37069 1.76707 1.34401 1.43620 1.47151 1.13409 1.27431 1.17439 0.91932 0.83292 0.98593 1.20589 0.94354 0.97890 1.09052 1.20531 0.98497 0.91901 0.97436 1.20241 0.93755 0.99703 1.08411 1.18817 0.90649 0.86573 0.91826 1.83612 1.24163 1.32667 1.71669 1.20725 0.82085 1.03686 1.40022 0.87831 1.24461 0.94806 0.99395 0.95293 1.69641 1.06671 1.35413 1.40125 0.86176 0.80380 0.82225 0.78110 1.19842 1.20848 1.18298 1.20947 1.01854 0.91729 1.12142 0.93593 0.93155 0.89642 0.92673 0.92430 0.92737 0.89595 0.93151 0.93506 0.88795 0.88795 0.75747 0.86149 0.86491 0.86422 0.91057 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.18 37.16 0.30 -1.33 16 2 C -0.05 -0.50 0.77 -154.51 -0.12 -0.62 16 3 C -0.14 -1.11 8.47 37.15 0.31 -0.80 16 4 C -0.16 -1.74 8.18 37.16 0.30 -1.43 16 5 C -0.13 -1.30 4.77 -27.88 -0.13 -1.43 16 6 C 0.51 7.02 6.98 -10.98 -0.08 6.95 16 7 O -0.51 -8.41 9.05 5.55 0.05 -8.36 16 8 N -0.67 -9.80 5.34 -9.88 -0.05 -9.86 16 9 C 0.18 3.35 6.27 -83.72 -0.52 2.82 16 10 C -0.20 -3.61 8.65 -39.35 -0.34 -3.95 16 11 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 12 C -0.20 -4.03 9.99 -39.36 -0.39 -4.42 16 13 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 14 O -0.22 -5.66 8.58 0.03 0.00 -5.66 16 15 C -0.39 -10.84 9.90 30.88 0.31 -10.54 16 16 H 0.10 2.93 5.53 -52.49 -0.29 2.64 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.12 13.96 55.48 0.77 -24.35 16 19 Si 0.91 21.51 28.62 -169.99 -4.86 16.64 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -6.17 7.11 56.52 0.40 -5.76 16 23 C -0.25 -5.22 9.05 -39.21 -0.35 -5.58 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.12 5.51 -51.93 -0.29 0.83 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 1.20 5.51 -51.93 -0.29 0.92 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 4.80 8.82 -40.82 -0.36 4.44 16 36 H 0.12 2.11 6.43 -52.48 -0.34 1.77 16 37 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.14 2.97 5.71 -52.49 -0.30 2.67 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -30.44 325.47 -6.30 -36.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.65 Total: 6.40 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -1.47 Total: -16.46 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.72 Total: -34.20 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.05 Total: -14.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.44 -6.30 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.492 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds