Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46888 * 2 1 4 4 C 1.53001 * 109.47052 * 239.99696 * 2 1 3 5 5 C 1.53003 * 109.46728 * 120.00001 * 2 1 3 6 6 C 1.50699 * 109.47121 * 60.00126 * 5 2 1 7 7 O 1.21289 * 120.00249 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99804 * 179.97438 * 6 5 2 9 9 C 1.39920 * 119.99730 * 174.78336 * 8 6 5 10 10 C 1.38953 * 120.03968 * 326.32006 * 9 8 6 11 11 C 1.38159 * 120.06829 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.14104 * 359.69760 * 11 10 9 13 13 C 1.38910 * 120.06397 * 0.55665 * 12 11 10 14 14 O 1.35749 * 120.02841 * 179.74325 * 13 12 11 15 15 C 1.34837 * 116.99834 * 173.82566 * 14 13 12 16 16 H 1.08000 * 119.99728 * 354.59101 * 15 14 13 17 17 C 1.38649 * 120.00104 * 174.60230 * 15 14 13 18 18 N 1.31557 * 120.00167 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99962 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00288 * 19 17 15 21 21 H 1.48500 * 109.46898 * 210.00558 * 19 17 15 22 22 H 1.48497 * 109.46956 * 330.00417 * 19 17 15 23 23 C 1.38723 * 120.03221 * 146.34153 * 9 8 6 24 24 H 1.08994 * 109.47394 * 300.00117 * 1 2 3 25 25 H 1.09003 * 109.47330 * 60.00290 * 1 2 3 26 26 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47306 * 299.99330 * 3 2 1 29 29 H 1.09001 * 109.47353 * 60.00395 * 3 2 1 30 30 H 1.08995 * 109.47264 * 299.99914 * 4 2 1 31 31 H 1.09002 * 109.46872 * 60.00363 * 4 2 1 32 32 H 1.09004 * 109.46673 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47086 * 300.00070 * 5 2 1 34 34 H 1.09002 * 109.46511 * 180.02562 * 5 2 1 35 35 H 0.96993 * 119.99779 * 354.78274 * 8 6 5 36 36 H 1.08007 * 119.96748 * 0.02562 * 10 9 8 37 37 H 1.08005 * 119.92847 * 179.97438 * 11 10 9 38 38 H 1.07996 * 119.96676 * 180.29592 * 12 11 10 39 39 H 0.96996 * 120.00446 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.06889 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2492 7 8 0.8399 -2.5387 0.3398 8 7 1.8635 -2.9721 2.2599 9 6 1.3098 -4.2558 2.3171 10 6 0.0158 -4.4762 1.8612 11 6 -0.5317 -5.7433 1.9179 12 6 0.2071 -6.7965 2.4221 13 6 1.4993 -6.5816 2.8843 14 8 2.2227 -7.6158 3.3843 15 6 3.5107 -7.3674 3.6965 16 1 3.9470 -6.4070 3.4647 17 6 4.2751 -8.3450 4.3148 18 7 5.5319 -8.1029 4.6189 19 14 3.5204 -10.0060 4.7161 20 1 3.7167 -10.9290 3.5693 21 1 4.1769 -10.5694 5.9230 22 1 2.0676 -9.8400 4.9748 23 6 2.0520 -5.3099 2.8296 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -0.2075 2.1392 34 1 3.1299 -0.7209 1.2495 35 1 2.4820 -2.6795 2.9474 36 1 -0.5625 -3.6560 1.4620 37 1 -1.5378 -5.9120 1.5633 38 1 -0.2219 -7.7868 2.4607 39 1 6.0666 -8.7867 5.0518 40 1 3.0579 -5.1412 3.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036681669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -65.423874 kcal Electronic energy + Delta-G solvation = -21267.398245 eV Core-core repulsion = 18046.942911 eV Total energy + Delta-G solvation = -3220.455334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74736 -40.61563 -38.64149 -37.24048 -35.58714 -34.40711 -31.33559 -30.73005 -28.85754 -28.08292 -27.99465 -27.16367 -23.76306 -23.40921 -21.47342 -20.17616 -19.69658 -19.20895 -18.07249 -17.19321 -16.97855 -16.48926 -16.17733 -15.72389 -15.57170 -15.44346 -15.30203 -15.14438 -14.71713 -14.20080 -14.04366 -13.76859 -13.45854 -13.01118 -12.93276 -12.80853 -12.74938 -12.62218 -12.39707 -12.25478 -12.10130 -11.95691 -11.64465 -11.52435 -11.50128 -11.15390 -10.84206 -10.43779 -9.38928 -8.91037 -8.50139 -6.23041 0.38571 0.64852 1.32989 1.36874 1.52831 1.66069 2.10322 2.28817 2.77117 3.09621 3.11229 3.65078 3.81577 3.95062 4.11384 4.27439 4.31777 4.41854 4.58469 4.61558 4.64701 4.66317 4.74483 4.87104 4.88821 4.91048 5.01000 5.11291 5.19190 5.26455 5.35747 5.36109 5.42568 5.50129 5.55604 5.61108 5.71049 5.75128 5.90633 6.21850 6.50122 6.84313 7.19984 7.57695 8.61195 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003775 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.816188 B = 7415.894317 C = 8085.054896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.051 4.051 3 C -0.137 4.137 4 C -0.154 4.154 5 C -0.126 4.126 6 C 0.508 3.492 7 O -0.538 6.538 8 N -0.670 5.670 9 C 0.185 3.815 10 C -0.192 4.192 11 C -0.053 4.053 12 C -0.205 4.205 13 C 0.140 3.860 14 O -0.241 6.241 15 C -0.399 4.399 16 H 0.081 0.919 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.258 4.258 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.133 0.867 39 H 0.285 0.715 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 16.883 -5.792 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.211 4.211 5 C -0.166 4.166 6 C 0.298 3.702 7 O -0.415 6.415 8 N -0.315 5.315 9 C 0.090 3.910 10 C -0.212 4.212 11 C -0.072 4.072 12 C -0.225 4.225 13 C 0.090 3.910 14 O -0.148 6.148 15 C -0.475 4.475 16 H 0.099 0.901 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.280 4.280 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.258 0.742 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.154 16.391 -6.313 19.807 hybrid contribution 0.783 -0.644 0.596 1.176 sum -8.370 15.748 -5.717 18.728 Atomic orbital electron populations 1.22068 0.94651 1.02641 1.01550 1.20297 0.95957 0.95662 0.93239 1.21844 1.01375 0.93532 1.02627 1.22086 1.00353 1.01406 0.97292 1.21901 1.03699 0.89184 1.01788 1.21576 0.79712 0.88780 0.80101 1.90598 1.38236 1.77435 1.35258 1.43716 1.47405 1.12069 1.28341 1.17522 0.91955 0.84338 0.97182 1.20919 0.94042 0.98623 1.07629 1.20986 0.99866 0.90804 0.95521 1.20534 0.92657 1.01274 1.07987 1.19370 0.91922 0.86783 0.92959 1.83554 1.23385 1.34036 1.73815 1.20680 0.83350 1.03133 1.40351 0.90108 1.25246 0.95209 1.02857 0.95302 1.69718 1.07859 1.36848 1.41759 0.85241 0.79244 0.77944 0.78468 1.19200 1.19271 1.18597 1.20926 1.01496 0.92388 1.13186 0.92348 0.92723 0.92328 0.91897 0.92137 0.91424 0.92671 0.92578 0.92982 0.86092 0.86921 0.74231 0.84905 0.82410 0.84941 0.90570 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.18 71.98 0.59 -2.31 16 2 C -0.05 -0.88 0.77 -52.18 -0.04 -0.92 16 3 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 4 C -0.15 -3.25 8.18 71.98 0.59 -2.66 16 5 C -0.13 -2.10 4.77 29.85 0.14 -1.96 16 6 C 0.51 13.14 6.98 87.66 0.61 13.75 16 7 O -0.54 -17.15 9.05 -3.06 -0.03 -17.18 16 8 N -0.67 -18.84 5.34 -303.55 -1.62 -20.46 16 9 C 0.18 6.74 6.27 38.14 0.24 6.98 16 10 C -0.19 -6.61 8.65 22.42 0.19 -6.41 16 11 C -0.05 -1.76 10.03 22.23 0.22 -1.54 16 12 C -0.20 -7.98 9.99 22.41 0.22 -7.76 16 13 C 0.14 6.55 6.64 22.56 0.15 6.70 16 14 O -0.24 -12.98 8.58 -22.80 -0.20 -13.18 16 15 C -0.40 -23.20 9.90 67.92 0.67 -22.53 16 16 H 0.08 4.90 5.53 -2.91 -0.02 4.88 16 17 C 0.01 0.72 5.49 84.83 0.47 1.18 16 18 N -0.92 -54.22 13.96 21.61 0.30 -53.92 16 19 Si 0.97 44.99 28.62 68.60 1.96 46.96 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 23 C -0.26 -11.30 9.05 22.51 0.20 -11.10 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.46 5.51 -2.39 -0.01 1.45 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 1.52 5.51 -2.39 -0.01 1.51 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 9.48 8.82 -92.71 -0.82 8.66 16 36 H 0.13 4.34 6.43 -2.91 -0.02 4.32 16 37 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.12 5.51 5.71 -2.91 -0.02 5.49 16 Total: -1.00 -68.21 325.47 5.53 -62.69 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.23 Total: 24.74 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.87 Total: -29.65 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.32 Total: -74.38 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.22 Total: -30.36 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.96 kcal Total: -68.21 5.53 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.737 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds