Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53009 * 109.46716 * 65.00081 * 3 2 1 5 5 C 1.53000 * 109.46852 * 183.07617 * 4 3 2 6 6 C 1.50693 * 109.47105 * 184.99900 * 3 2 1 7 7 O 1.21283 * 120.00314 * 351.73683 * 6 3 2 8 8 N 1.34776 * 119.99782 * 171.73105 * 6 3 2 9 9 C 1.39927 * 119.99679 * 176.64895 * 8 6 3 10 10 C 1.38957 * 120.03950 * 326.05402 * 9 8 6 11 11 C 1.38162 * 120.06918 * 180.02562 * 10 9 8 12 12 C 1.38168 * 120.13728 * 359.69742 * 11 10 9 13 13 C 1.38914 * 120.06962 * 0.56207 * 12 11 10 14 14 O 1.35744 * 120.03363 * 179.74497 * 13 12 11 15 15 C 1.34834 * 117.00259 * 174.28959 * 14 13 12 16 16 H 1.07997 * 119.99949 * 5.36072 * 15 14 13 17 17 C 1.38651 * 120.00021 * 185.37608 * 15 14 13 18 18 N 1.31560 * 120.00308 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47165 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47612 * 119.99598 * 19 17 15 22 22 H 1.48507 * 109.46950 * 239.99435 * 19 17 15 23 23 C 1.38721 * 120.03378 * 146.07730 * 9 8 6 24 24 H 1.09001 * 109.47017 * 299.99795 * 1 2 3 25 25 H 1.09002 * 109.47297 * 59.99634 * 1 2 3 26 26 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46650 * 240.00521 * 2 1 3 28 28 H 1.08995 * 109.46969 * 120.00122 * 2 1 3 29 29 H 1.08997 * 109.47295 * 305.00735 * 3 2 1 30 30 H 1.08991 * 109.47407 * 303.07883 * 4 3 2 31 31 H 1.09004 * 109.46748 * 63.07993 * 4 3 2 32 32 H 1.08998 * 109.47106 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47504 * 300.04779 * 5 4 3 34 34 H 1.09005 * 109.47017 * 60.04593 * 5 4 3 35 35 H 0.97000 * 120.00468 * 356.65160 * 8 6 3 36 36 H 1.07997 * 119.96922 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.93293 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.96625 * 180.29999 * 12 11 10 39 39 H 0.96998 * 120.00096 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.06496 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3075 5 6 2.0781 3.5906 1.2754 6 6 3.5419 1.4443 -0.1238 7 8 4.1574 0.4017 -0.0534 8 7 4.2010 2.6046 -0.3128 9 6 5.5995 2.6154 -0.3576 10 6 6.3275 1.7299 0.4277 11 6 7.7084 1.7404 0.3843 12 6 8.3697 2.6266 -0.4441 13 6 7.6478 3.5181 -1.2276 14 8 8.2984 4.3919 -2.0374 15 6 7.5402 5.1471 -2.8578 16 1 6.4633 5.1039 -2.7898 17 6 8.1433 5.9787 -3.7890 18 7 9.4552 6.0314 -3.8718 19 14 7.0930 7.0243 -4.9260 20 1 5.6570 6.7837 -4.6340 21 1 7.4085 8.4594 -4.7112 22 1 7.3784 6.6607 -6.3373 23 6 6.2607 3.5106 -1.1858 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5526 2.0768 1.4235 31 1 2.1141 1.6203 2.1457 32 1 1.7901 4.0778 2.2070 33 1 3.1607 3.6404 1.1586 34 1 1.5986 4.0970 0.4376 35 1 3.7060 3.4322 -0.4178 36 1 5.8134 1.0327 1.0726 37 1 8.2720 1.0515 0.9959 38 1 9.4491 2.6292 -0.4795 39 1 9.8771 6.6135 -4.5230 40 1 5.6972 4.2004 -1.7965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = -49.245625 kcal Electronic energy + Delta-G solvation = -21325.364289 eV Core-core repulsion = 18105.610497 eV Total energy + Delta-G solvation = -3219.753792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50967 -38.78220 -36.72154 -35.82858 -34.36156 -32.26013 -31.84232 -29.38192 -28.66141 -27.34429 -25.32125 -23.13642 -22.85284 -21.79791 -20.71241 -19.78319 -17.97189 -17.71058 -16.96442 -15.74441 -15.50046 -15.03269 -14.81915 -14.39143 -14.24374 -14.08217 -14.01865 -13.62125 -13.42570 -13.00725 -12.68093 -12.41132 -12.34433 -11.96967 -11.76947 -11.63280 -11.49010 -11.23575 -11.10930 -11.01645 -10.92149 -10.76279 -10.65969 -10.45008 -9.81626 -9.55085 -9.31580 -8.81233 -7.71838 -7.15254 -6.45413 -4.05271 1.97387 2.37762 2.87982 3.10718 3.12131 3.17133 3.27841 3.95140 4.45771 4.58252 4.61990 4.64806 4.97944 5.03915 5.08067 5.17562 5.26216 5.30224 5.38783 5.45275 5.59883 5.69520 5.72474 5.85416 5.87660 5.98102 5.99413 6.06237 6.08296 6.17057 6.25945 6.28950 6.64276 6.97614 7.00172 7.12930 7.31407 7.42410 7.71241 7.81921 7.99022 8.34787 9.00112 9.70687 10.72769 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.004350 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.908990 B = 6435.044701 C = 7321.918080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.177 4.177 6 C 0.514 3.486 7 O -0.520 6.520 8 N -0.670 5.670 9 C 0.178 3.822 10 C -0.205 4.205 11 C -0.064 4.064 12 C -0.200 4.200 13 C 0.168 3.832 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.257 4.257 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -5.638 8.135 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.129 4.129 4 C -0.152 4.152 5 C -0.235 4.235 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.317 5.317 9 C 0.085 3.915 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.220 4.220 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.279 4.279 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.799 -6.214 8.016 18.775 hybrid contribution -0.799 1.033 -0.757 1.510 sum -16.599 -5.181 7.258 18.842 Atomic orbital electron populations 1.21848 0.95512 1.01842 1.01843 1.21331 0.95260 0.94102 1.03641 1.21466 0.91674 0.99367 1.00421 1.21539 1.01913 0.95765 0.95988 1.22194 1.02785 0.95953 1.02523 1.20736 0.89969 0.83314 0.75857 1.90706 1.69303 1.31369 1.48115 1.43968 1.05722 1.10554 1.71478 1.17463 0.81257 0.97298 0.95509 1.20553 0.93677 1.03857 1.04456 1.20540 0.93560 0.97021 0.97150 1.20256 0.99597 0.99555 1.02599 1.19065 0.89956 0.88965 0.90582 1.84006 1.34626 1.44111 1.45287 1.21323 0.90748 1.20737 1.14048 0.89208 1.25274 0.96256 0.97703 0.97244 1.70046 1.08404 1.36917 1.34357 0.85664 0.79154 0.79172 0.79494 1.19223 1.20135 1.20138 1.20825 0.94740 1.06561 1.05780 0.92443 0.92701 0.92489 0.91170 0.91071 0.88658 0.90405 0.91324 0.91954 0.91236 0.92187 0.75454 0.86322 0.86646 0.86393 0.92073 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.11 -1.05 4.70 -26.73 -0.13 -1.18 16 3 C -0.11 -1.11 2.27 -91.77 -0.21 -1.31 16 4 C -0.11 -0.97 5.24 -26.73 -0.14 -1.11 16 5 C -0.18 -1.49 8.88 37.16 0.33 -1.16 16 6 C 0.51 7.61 6.71 -10.99 -0.07 7.53 16 7 O -0.52 -9.60 13.66 5.55 0.08 -9.53 16 8 N -0.67 -10.23 4.02 -9.88 -0.04 -10.27 16 9 C 0.18 3.44 6.27 -83.72 -0.53 2.92 16 10 C -0.20 -3.99 8.66 -39.34 -0.34 -4.33 16 11 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 12 C -0.20 -4.35 9.99 -39.36 -0.39 -4.75 16 13 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 14 O -0.18 -5.05 9.76 0.06 0.00 -5.05 16 15 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 19 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.26 -5.63 9.08 -39.21 -0.36 -5.98 16 24 H 0.06 0.37 6.50 -51.93 -0.34 0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.52 6.42 -51.93 -0.33 0.19 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.71 5.17 -51.93 -0.27 0.44 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 5.07 6.56 -40.82 -0.27 4.80 16 36 H 0.12 2.26 6.39 -52.49 -0.34 1.92 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -32.39 326.48 -6.71 -39.10 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.47 Total: 7.52 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.93 Total: -17.54 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.72 Total: -34.74 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.39 -6.71 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.146 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds