Wall clock time and date at job start Mon Mar 30 2020 01:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53009 * 109.46716 * 65.00081 * 3 2 1 5 5 C 1.53000 * 109.46852 * 183.07617 * 4 3 2 6 6 C 1.50693 * 109.47105 * 184.99900 * 3 2 1 7 7 O 1.21283 * 120.00314 * 351.73683 * 6 3 2 8 8 N 1.34776 * 119.99782 * 171.73105 * 6 3 2 9 9 C 1.39927 * 119.99679 * 176.64895 * 8 6 3 10 10 C 1.38957 * 120.03950 * 326.05402 * 9 8 6 11 11 C 1.38162 * 120.06918 * 180.02562 * 10 9 8 12 12 C 1.38168 * 120.13728 * 359.69742 * 11 10 9 13 13 C 1.38914 * 120.06962 * 0.56207 * 12 11 10 14 14 O 1.35744 * 120.03363 * 179.74497 * 13 12 11 15 15 C 1.34834 * 117.00259 * 174.28959 * 14 13 12 16 16 H 1.07997 * 119.99949 * 5.36072 * 15 14 13 17 17 C 1.38651 * 120.00021 * 185.37608 * 15 14 13 18 18 N 1.31560 * 120.00308 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47165 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47612 * 119.99598 * 19 17 15 22 22 H 1.48507 * 109.46950 * 239.99435 * 19 17 15 23 23 C 1.38721 * 120.03378 * 146.07730 * 9 8 6 24 24 H 1.09001 * 109.47017 * 299.99795 * 1 2 3 25 25 H 1.09002 * 109.47297 * 59.99634 * 1 2 3 26 26 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46650 * 240.00521 * 2 1 3 28 28 H 1.08995 * 109.46969 * 120.00122 * 2 1 3 29 29 H 1.08997 * 109.47295 * 305.00735 * 3 2 1 30 30 H 1.08991 * 109.47407 * 303.07883 * 4 3 2 31 31 H 1.09004 * 109.46748 * 63.07993 * 4 3 2 32 32 H 1.08998 * 109.47106 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47504 * 300.04779 * 5 4 3 34 34 H 1.09005 * 109.47017 * 60.04593 * 5 4 3 35 35 H 0.97000 * 120.00468 * 356.65160 * 8 6 3 36 36 H 1.07997 * 119.96922 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.93293 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.96625 * 180.29999 * 12 11 10 39 39 H 0.96998 * 120.00096 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.06496 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3075 5 6 2.0781 3.5906 1.2754 6 6 3.5419 1.4443 -0.1238 7 8 4.1574 0.4017 -0.0534 8 7 4.2010 2.6046 -0.3128 9 6 5.5995 2.6154 -0.3576 10 6 6.3275 1.7299 0.4277 11 6 7.7084 1.7404 0.3843 12 6 8.3697 2.6266 -0.4441 13 6 7.6478 3.5181 -1.2276 14 8 8.2984 4.3919 -2.0374 15 6 7.5402 5.1471 -2.8578 16 1 6.4633 5.1039 -2.7898 17 6 8.1433 5.9787 -3.7890 18 7 9.4552 6.0314 -3.8718 19 14 7.0930 7.0243 -4.9260 20 1 5.6570 6.7837 -4.6340 21 1 7.4085 8.4594 -4.7112 22 1 7.3784 6.6607 -6.3373 23 6 6.2607 3.5106 -1.1858 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5526 2.0768 1.4235 31 1 2.1141 1.6203 2.1457 32 1 1.7901 4.0778 2.2070 33 1 3.1607 3.6404 1.1586 34 1 1.5986 4.0970 0.4376 35 1 3.7060 3.4322 -0.4178 36 1 5.8134 1.0327 1.0726 37 1 8.2720 1.0515 0.9959 38 1 9.4491 2.6292 -0.4795 39 1 9.8771 6.6135 -4.5230 40 1 5.6972 4.2004 -1.7965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036681699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:00 Heat of formation + Delta-G solvation = -68.959501 kcal Electronic energy + Delta-G solvation = -21326.219147 eV Core-core repulsion = 18105.610497 eV Total energy + Delta-G solvation = -3220.608650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81659 -40.48770 -38.31664 -36.87102 -35.77606 -34.24233 -32.61582 -30.97881 -30.28302 -28.24732 -27.29167 -24.22022 -23.81917 -23.42687 -22.00672 -20.98752 -19.77177 -19.22460 -18.27291 -17.21951 -16.94587 -16.64281 -16.02694 -15.87918 -15.60964 -15.49433 -15.11758 -14.93652 -14.62610 -14.49060 -14.17232 -13.60515 -13.40714 -13.24064 -12.96990 -12.79466 -12.74987 -12.59178 -12.48321 -12.28867 -12.09325 -11.86241 -11.70234 -11.44456 -11.40600 -11.24945 -10.81329 -10.62672 -9.36749 -8.88868 -8.47184 -6.16328 0.37615 0.67302 1.35651 1.43805 1.54008 1.61290 2.04603 2.17619 2.82559 3.14188 3.48549 3.56031 3.78134 3.87595 4.09514 4.25929 4.30607 4.35972 4.42910 4.52171 4.57013 4.61196 4.69549 4.73046 4.81503 4.94611 5.00734 5.09258 5.10630 5.19565 5.23159 5.29208 5.38269 5.40936 5.45110 5.51657 5.64763 5.65250 6.01005 6.15250 6.44069 6.97106 7.11417 7.76336 8.76054 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.004350 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.908990 B = 6435.044701 C = 7321.918080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.099 4.099 4 C -0.109 4.109 5 C -0.178 4.178 6 C 0.511 3.489 7 O -0.559 6.559 8 N -0.662 5.662 9 C 0.184 3.816 10 C -0.200 4.200 11 C -0.052 4.052 12 C -0.215 4.215 13 C 0.136 3.864 14 O -0.226 6.226 15 C -0.414 4.414 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.249 1.249 21 H -0.267 1.267 22 H -0.271 1.271 23 C -0.262 4.262 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.422 0.578 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 -5.783 8.797 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.120 4.120 4 C -0.146 4.146 5 C -0.236 4.236 6 C 0.301 3.699 7 O -0.436 6.436 8 N -0.310 5.310 9 C 0.089 3.911 10 C -0.221 4.221 11 C -0.071 4.071 12 C -0.234 4.234 13 C 0.084 3.916 14 O -0.132 6.132 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.838 3.162 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.283 4.283 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.313 -6.376 8.719 22.128 hybrid contribution 0.201 0.856 -0.756 1.160 sum -19.112 -5.520 7.963 21.428 Atomic orbital electron populations 1.21815 0.93057 1.02583 1.02990 1.21324 0.97286 0.93495 1.02187 1.21553 0.87745 1.00229 1.02441 1.21551 1.03475 0.95323 0.94265 1.22200 1.01381 0.96160 1.03818 1.21682 0.91854 0.82204 0.74173 1.90685 1.70541 1.32668 1.49739 1.44037 1.04019 1.11829 1.71142 1.17535 0.83431 0.95967 0.94137 1.20858 0.93995 1.03376 1.03861 1.20927 0.93753 0.96253 0.96128 1.20482 0.99948 0.99936 1.03071 1.19583 0.91429 0.89547 0.91021 1.83976 1.36135 1.46048 1.47070 1.21861 0.91556 1.21129 1.14493 0.87961 1.26600 0.97710 0.98903 0.98730 1.70192 1.10723 1.38814 1.36035 0.84530 0.77975 0.77038 0.76659 1.17167 1.19235 1.19614 1.20855 0.93935 1.07225 1.06329 0.90961 0.91799 0.92097 0.93067 0.92259 0.86375 0.87640 0.92324 0.90995 0.93417 0.90581 0.73694 0.85310 0.82893 0.86264 0.91807 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.10 -1.87 4.70 30.60 0.14 -1.73 16 3 C -0.10 -1.75 2.27 -11.54 -0.03 -1.77 16 4 C -0.11 -1.47 5.24 30.60 0.16 -1.31 16 5 C -0.18 -2.44 8.88 71.98 0.64 -1.80 16 6 C 0.51 14.25 6.71 87.66 0.59 14.84 16 7 O -0.56 -20.06 13.66 -3.04 -0.04 -20.10 16 8 N -0.66 -19.15 4.02 -303.56 -1.22 -20.37 16 9 C 0.18 6.97 6.27 38.14 0.24 7.21 16 10 C -0.20 -7.53 8.66 22.42 0.19 -7.34 16 11 C -0.05 -1.93 10.03 22.24 0.22 -1.71 16 12 C -0.21 -9.48 9.99 22.42 0.22 -9.26 16 13 C 0.14 6.84 6.64 22.56 0.15 6.99 16 14 O -0.23 -13.57 9.76 -22.71 -0.22 -13.79 16 15 C -0.41 -23.84 9.49 67.92 0.64 -23.19 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 17 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 18 N -0.92 -56.10 13.67 21.61 0.30 -55.81 16 19 Si 1.02 42.01 29.55 68.60 2.03 44.03 16 20 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 C -0.26 -11.56 9.08 22.51 0.20 -11.35 16 24 H 0.07 0.62 6.50 -2.39 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 0.92 6.42 -2.39 -0.02 0.91 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.87 5.17 -2.38 -0.01 0.85 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.42 9.66 6.56 -92.71 -0.61 9.05 16 36 H 0.13 4.67 6.39 -2.91 -0.02 4.65 16 37 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.13 5.57 5.64 -2.91 -0.02 5.55 16 Total: -1.00 -74.02 326.48 5.83 -68.19 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.45 Total: 30.02 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 4.55 Total: -32.17 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -0.92 Total: -76.18 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.26 Total: -33.90 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -74.02 5.83 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.768 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds