Wall clock time and date at job start Mon Mar 30 2020 01:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 C 1.52998 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00046 * 4 3 2 6 6 C 1.53001 * 109.46696 * 65.00452 * 4 3 2 7 7 C 1.50700 * 109.47082 * 184.99983 * 4 3 2 8 8 O 1.21289 * 120.00200 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99894 * 180.02562 * 7 4 3 10 10 C 1.39930 * 119.99993 * 175.48951 * 9 7 4 11 11 C 1.38956 * 120.03641 * 215.14151 * 10 9 7 12 12 C 1.38157 * 120.06966 * 179.97438 * 11 10 9 13 13 C 1.38170 * 120.13625 * 359.73917 * 12 11 10 14 14 C 1.38916 * 120.07000 * 0.51246 * 13 12 11 15 15 O 1.35753 * 120.03077 * 179.76701 * 14 13 12 16 16 C 1.34829 * 117.00169 * 354.34287 * 15 14 13 17 17 H 1.08004 * 119.99857 * 5.03167 * 16 15 14 18 18 C 1.38651 * 119.99801 * 185.02321 * 16 15 14 19 19 N 1.31554 * 120.00132 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47158 * 120.00350 * 20 18 16 23 23 H 1.48500 * 109.46872 * 240.00083 * 20 18 16 24 24 C 1.38714 * 120.03301 * 35.11894 * 10 9 7 25 25 H 1.08990 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46759 * 300.00259 * 1 2 3 27 27 H 1.08998 * 109.46775 * 60.00070 * 1 2 3 28 28 H 1.08991 * 109.46919 * 239.99885 * 2 1 3 29 29 H 1.08998 * 109.46775 * 119.99930 * 2 1 3 30 30 H 1.09001 * 109.46887 * 60.00025 * 3 2 1 31 31 H 1.08993 * 109.47106 * 300.00295 * 3 2 1 32 32 H 1.09001 * 109.47715 * 59.99444 * 6 4 3 33 33 H 1.09000 * 109.46961 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47270 * 299.99373 * 6 4 3 35 35 H 0.96995 * 120.00083 * 355.48278 * 9 7 4 36 36 H 1.08002 * 119.96426 * 359.95090 * 11 10 9 37 37 H 1.07995 * 119.93627 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.96933 * 180.25800 * 13 12 11 39 39 H 0.97001 * 120.00138 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.07302 * 0.04018 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8426 6 6 4.0805 0.8328 -1.3065 7 6 4.0723 2.8579 0.1245 8 8 3.2842 3.7763 0.2048 9 7 5.3974 3.1033 0.1459 10 6 5.8645 4.4222 0.1657 11 6 7.0338 4.7561 -0.5068 12 6 7.4953 6.0581 -0.4882 13 6 6.7934 7.0332 0.1941 14 6 5.6266 6.7048 0.8727 15 8 4.9401 7.6626 1.5467 16 6 5.5041 8.8852 1.6167 17 1 6.4194 9.0892 1.0808 18 6 4.9091 9.8807 2.3766 19 7 3.7945 9.6321 3.0297 20 14 5.6901 11.5748 2.4730 21 1 6.9285 11.5963 1.6538 22 1 4.7373 12.5894 1.9556 23 1 6.0252 11.8857 3.8859 24 6 5.1605 5.3978 0.8561 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7174 1.4220 -2.1485 33 1 5.1705 0.8331 -1.3063 34 1 3.7172 -0.1910 -1.3961 35 1 6.0272 2.3657 0.1478 36 1 7.5826 3.9968 -1.0442 37 1 8.4041 6.3153 -1.0119 38 1 7.1544 8.0511 0.2034 39 1 3.3784 10.3284 3.5616 40 1 4.2516 5.1408 1.3798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:14 Heat of formation + Delta-G solvation = -56.000523 kcal Electronic energy + Delta-G solvation = -20927.308813 eV Core-core repulsion = 17707.262106 eV Total energy + Delta-G solvation = -3220.046707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30375 -38.69237 -36.78535 -35.84663 -34.08995 -32.25442 -32.10910 -29.42633 -28.36995 -26.78114 -25.31647 -24.27757 -22.26118 -21.43453 -20.78862 -19.67886 -18.19484 -17.36551 -16.62510 -15.81663 -15.58586 -15.03629 -14.93388 -14.46397 -14.29813 -14.07266 -13.67044 -13.53862 -13.27881 -12.91373 -12.58841 -12.51187 -12.37528 -12.04396 -11.71566 -11.52175 -11.35572 -11.16869 -11.07946 -11.00521 -10.96366 -10.74843 -10.64170 -10.42170 -9.72068 -9.59741 -9.09000 -8.79556 -7.66732 -7.15273 -6.39496 -3.98631 2.04937 2.37185 2.90855 3.15627 3.16523 3.22475 3.29960 4.00669 4.53715 4.56745 4.65393 4.75723 4.99350 5.07043 5.10128 5.16169 5.29308 5.41334 5.48003 5.62513 5.64001 5.65889 5.72452 5.80577 5.85839 5.89851 6.01711 6.12910 6.16727 6.25379 6.29998 6.42048 6.74375 6.92576 7.07011 7.11906 7.37703 7.51135 7.74917 7.83597 8.05585 8.42441 9.05492 9.77407 10.78550 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.003728 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.743426 B = 7509.581776 C = 8606.521086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.108 4.108 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.507 3.493 8 O -0.509 6.509 9 N -0.670 5.670 10 C 0.174 3.826 11 C -0.236 4.236 12 C -0.059 4.059 13 C -0.246 4.246 14 C 0.167 3.833 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.187 4.187 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.404 0.596 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.269 0.731 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -18.085 -6.666 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.130 4.130 5 H 0.115 0.885 6 C -0.203 4.203 7 C 0.294 3.706 8 O -0.382 6.382 9 N -0.315 5.315 10 C 0.081 3.919 11 C -0.257 4.257 12 C -0.078 4.078 13 C -0.266 4.266 14 C 0.112 3.888 15 O -0.077 6.077 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.209 4.209 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.849 -17.322 -6.346 18.467 hybrid contribution 0.848 0.519 0.013 0.994 sum 1.697 -16.803 -6.334 18.037 Atomic orbital electron populations 1.21766 0.95769 1.01344 1.02179 1.21591 0.96060 0.96649 1.01879 1.21461 0.92082 0.96623 1.03978 1.21332 0.98071 0.93107 1.00469 0.88510 1.21833 1.01063 1.01294 0.96064 1.20820 0.82035 0.91578 0.76163 1.90786 1.54967 1.45921 1.46539 1.43429 1.07455 1.06939 1.73689 1.17216 0.94670 0.83250 0.96759 1.20270 1.00003 0.97095 1.08377 1.20499 0.98030 0.92161 0.97119 1.21181 0.98931 1.00507 1.05977 1.19152 0.89912 0.89084 0.90649 1.83995 1.42395 1.18331 1.63009 1.21397 1.09489 0.84964 1.30905 0.88954 1.25306 0.96123 0.99641 0.95532 1.70065 1.17041 1.34017 1.28421 0.85640 0.78868 0.80428 0.78426 1.19096 1.20169 1.20169 1.20184 1.03979 0.90519 1.06193 0.92928 0.92568 0.92654 0.91847 0.92078 0.90807 0.91122 0.91935 0.92209 0.91220 0.76074 0.87456 0.87092 0.85479 0.92095 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.02 5.69 -26.73 -0.15 -1.17 16 3 C -0.10 -1.13 4.03 -26.73 -0.11 -1.24 16 4 C -0.11 -1.12 2.72 -91.77 -0.25 -1.37 16 5 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 7 C 0.51 7.84 7.00 -10.99 -0.08 7.76 16 8 O -0.51 -10.50 13.36 5.55 0.07 -10.42 16 9 N -0.67 -9.83 5.19 -9.88 -0.05 -9.88 16 10 C 0.17 3.33 6.30 -83.72 -0.53 2.80 16 11 C -0.24 -4.12 9.96 -39.35 -0.39 -4.52 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.25 -5.54 9.17 -39.36 -0.36 -5.90 16 14 C 0.17 4.29 6.64 -39.13 -0.26 4.03 16 15 O -0.17 -5.25 9.76 0.04 0.00 -5.25 16 16 C -0.39 -11.30 9.49 30.88 0.29 -11.00 16 17 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.05 13.67 55.48 0.76 -25.30 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.19 -4.43 8.64 -39.21 -0.34 -4.77 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 34 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 35 H 0.40 4.21 8.38 -40.82 -0.34 3.86 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 2.83 5.63 -52.48 -0.30 2.54 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 3.37 6.23 -52.49 -0.33 3.05 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -34.25 332.39 -6.87 -41.12 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.67 Total: 6.35 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.97 Total: -17.60 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.71 Total: -35.17 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.07 Total: -15.67 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.25 -6.87 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.878 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds