Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 C 1.52998 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00046 * 4 3 2 6 6 C 1.53001 * 109.46696 * 65.00452 * 4 3 2 7 7 C 1.50700 * 109.47082 * 184.99983 * 4 3 2 8 8 O 1.21289 * 120.00200 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99894 * 180.02562 * 7 4 3 10 10 C 1.39930 * 119.99993 * 175.48951 * 9 7 4 11 11 C 1.38956 * 120.03641 * 215.14151 * 10 9 7 12 12 C 1.38157 * 120.06966 * 179.97438 * 11 10 9 13 13 C 1.38170 * 120.13625 * 359.73917 * 12 11 10 14 14 C 1.38916 * 120.07000 * 0.51246 * 13 12 11 15 15 O 1.35753 * 120.03077 * 179.76701 * 14 13 12 16 16 C 1.34829 * 117.00169 * 354.34287 * 15 14 13 17 17 H 1.08004 * 119.99857 * 5.03167 * 16 15 14 18 18 C 1.38651 * 119.99801 * 185.02321 * 16 15 14 19 19 N 1.31554 * 120.00132 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47158 * 120.00350 * 20 18 16 23 23 H 1.48500 * 109.46872 * 240.00083 * 20 18 16 24 24 C 1.38714 * 120.03301 * 35.11894 * 10 9 7 25 25 H 1.08990 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46759 * 300.00259 * 1 2 3 27 27 H 1.08998 * 109.46775 * 60.00070 * 1 2 3 28 28 H 1.08991 * 109.46919 * 239.99885 * 2 1 3 29 29 H 1.08998 * 109.46775 * 119.99930 * 2 1 3 30 30 H 1.09001 * 109.46887 * 60.00025 * 3 2 1 31 31 H 1.08993 * 109.47106 * 300.00295 * 3 2 1 32 32 H 1.09001 * 109.47715 * 59.99444 * 6 4 3 33 33 H 1.09000 * 109.46961 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47270 * 299.99373 * 6 4 3 35 35 H 0.96995 * 120.00083 * 355.48278 * 9 7 4 36 36 H 1.08002 * 119.96426 * 359.95090 * 11 10 9 37 37 H 1.07995 * 119.93627 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.96933 * 180.25800 * 13 12 11 39 39 H 0.97001 * 120.00138 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.07302 * 0.04018 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8532 0.8426 6 6 4.0805 0.8328 -1.3065 7 6 4.0723 2.8579 0.1245 8 8 3.2842 3.7763 0.2048 9 7 5.3974 3.1033 0.1459 10 6 5.8645 4.4222 0.1657 11 6 7.0338 4.7561 -0.5068 12 6 7.4953 6.0581 -0.4882 13 6 6.7934 7.0332 0.1941 14 6 5.6266 6.7048 0.8727 15 8 4.9401 7.6626 1.5467 16 6 5.5041 8.8852 1.6167 17 1 6.4194 9.0892 1.0808 18 6 4.9091 9.8807 2.3766 19 7 3.7945 9.6321 3.0297 20 14 5.6901 11.5748 2.4730 21 1 6.9285 11.5963 1.6538 22 1 4.7373 12.5894 1.9556 23 1 6.0252 11.8857 3.8859 24 6 5.1605 5.3978 0.8561 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7174 1.4220 -2.1485 33 1 5.1705 0.8331 -1.3063 34 1 3.7172 -0.1910 -1.3961 35 1 6.0272 2.3657 0.1478 36 1 7.5826 3.9968 -1.0442 37 1 8.4041 6.3153 -1.0119 38 1 7.1544 8.0511 0.2034 39 1 3.3784 10.3284 3.5616 40 1 4.2516 5.1408 1.3798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036987798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = -79.396529 kcal Electronic energy + Delta-G solvation = -20928.323340 eV Core-core repulsion = 17707.262106 eV Total energy + Delta-G solvation = -3221.061233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68938 -40.43366 -38.38567 -36.90512 -35.58462 -34.27880 -32.97209 -31.13143 -29.95781 -27.52126 -27.36267 -25.39827 -23.67045 -23.01008 -21.93042 -20.82762 -19.97666 -19.13302 -17.98074 -17.25376 -16.78442 -16.70153 -16.16672 -16.04742 -15.84027 -15.49946 -15.12087 -14.90974 -14.49143 -14.27238 -14.04282 -13.60459 -13.50793 -13.20483 -13.13751 -12.91767 -12.74190 -12.69637 -12.36613 -12.16713 -12.09779 -11.86223 -11.74402 -11.46133 -11.36833 -11.22765 -10.78667 -10.62414 -9.35899 -8.88368 -8.47934 -6.17814 0.41688 0.69208 1.33503 1.42632 1.53552 1.62590 2.03830 2.19165 2.82234 3.14138 3.43178 3.68128 3.80342 3.95101 4.13364 4.29079 4.34957 4.35851 4.38882 4.41672 4.62490 4.70601 4.73725 4.79523 4.90501 4.96088 5.02274 5.06672 5.10518 5.13545 5.25022 5.29790 5.41545 5.43878 5.46777 5.51584 5.62513 5.73170 6.02108 6.20425 6.48982 6.95659 7.21360 7.78636 8.76295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.003728 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.743426 B = 7509.581776 C = 8606.521086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.105 4.105 4 C -0.096 4.096 5 H 0.128 0.872 6 C -0.141 4.141 7 C 0.500 3.500 8 O -0.570 6.570 9 N -0.654 5.654 10 C 0.182 3.818 11 C -0.204 4.204 12 C -0.049 4.049 13 C -0.257 4.257 14 C 0.126 3.874 15 O -0.237 6.237 16 C -0.414 4.414 17 H 0.107 0.893 18 C -0.028 4.028 19 N -0.925 5.925 20 Si 1.025 2.975 21 H -0.247 1.247 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.217 4.217 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.431 0.569 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -20.916 -8.867 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.143 4.143 4 C -0.117 4.117 5 H 0.146 0.854 6 C -0.198 4.198 7 C 0.290 3.710 8 O -0.447 6.447 9 N -0.301 5.301 10 C 0.087 3.913 11 C -0.224 4.224 12 C -0.067 4.067 13 C -0.276 4.276 14 C 0.075 3.925 15 O -0.144 6.144 16 C -0.490 4.490 17 H 0.124 0.876 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.844 3.156 21 H -0.170 1.170 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.238 4.238 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.271 0.729 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.347 -20.254 -8.585 22.424 hybrid contribution -0.158 1.069 0.545 1.210 sum 4.189 -19.185 -8.040 21.219 Atomic orbital electron populations 1.21803 0.96117 1.02194 1.01326 1.21559 0.95769 0.94441 1.03526 1.21457 0.92946 0.98333 1.01571 1.21406 0.97248 0.89672 1.03396 0.85392 1.21871 1.02392 1.02139 0.93414 1.21939 0.81643 0.93221 0.74222 1.90789 1.56533 1.48369 1.49053 1.43376 1.07987 1.05950 1.72781 1.17398 0.94517 0.84276 0.95116 1.20915 0.98204 0.97916 1.05385 1.21055 0.98727 0.91560 0.95389 1.21333 0.98245 1.01630 1.06433 1.19697 0.91707 0.89257 0.91880 1.83961 1.44871 1.19592 1.65955 1.21964 1.10200 0.85289 1.31538 0.87594 1.26740 0.96592 1.04466 0.94700 1.70234 1.19547 1.35923 1.30628 0.84450 0.78413 0.73765 0.79007 1.16960 1.19440 1.19219 1.20212 1.03956 0.91435 1.08224 0.91140 0.93812 0.93284 0.89733 0.90660 0.93883 0.93156 0.93464 0.90075 0.88470 0.72925 0.81678 0.82180 0.85924 0.91880 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -1.64 5.69 30.60 0.17 -1.47 16 3 C -0.10 -2.28 4.03 30.59 0.12 -2.16 16 4 C -0.10 -1.79 2.72 -11.54 -0.03 -1.82 16 5 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.14 -1.69 8.85 71.98 0.64 -1.06 16 7 C 0.50 15.28 7.00 87.66 0.61 15.89 16 8 O -0.57 -25.09 13.36 -3.06 -0.04 -25.13 16 9 N -0.65 -17.59 5.19 -303.55 -1.58 -19.17 16 10 C 0.18 6.66 6.30 38.13 0.24 6.90 16 11 C -0.20 -6.12 9.96 22.42 0.22 -5.89 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 13 C -0.26 -11.56 9.17 22.42 0.21 -11.35 16 14 C 0.13 6.85 6.64 22.56 0.15 7.00 16 15 O -0.24 -15.53 9.76 -22.76 -0.22 -15.76 16 16 C -0.41 -25.40 9.49 67.92 0.64 -24.76 16 17 H 0.11 5.87 5.20 -2.91 -0.02 5.86 16 18 C -0.03 -1.68 5.49 84.83 0.47 -1.22 16 19 N -0.92 -60.02 13.67 21.61 0.30 -59.72 16 20 Si 1.03 44.50 29.55 68.60 2.03 46.52 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 C -0.22 -10.80 8.64 22.51 0.19 -10.60 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.88 6.57 -2.39 -0.02 0.86 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 1.18 7.95 -2.39 -0.02 1.16 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.66 7.67 -2.39 -0.02 0.64 16 34 H 0.10 0.70 6.57 -2.39 -0.02 0.69 16 35 H 0.43 6.90 8.38 -92.71 -0.78 6.12 16 36 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.12 5.53 5.63 -2.91 -0.02 5.51 16 39 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.10 5.50 6.23 -2.91 -0.02 5.49 16 Total: -1.00 -86.67 332.39 5.33 -81.34 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.27 Total: 25.57 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.58 Total: -33.65 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.28 Total: -78.89 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.26 Total: -40.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -86.67 5.33 -81.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.940 kcal (2) G-P(sol) polarization free energy of solvation -86.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds