Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46994 * 2 1 4 4 C 1.53000 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47189 * 54.99634 * 4 3 2 6 6 C 1.53001 * 109.47413 * 294.99739 * 4 3 2 7 7 C 1.50696 * 109.47108 * 174.99605 * 4 3 2 8 8 O 1.21283 * 120.00250 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00325 * 180.02562 * 7 4 3 10 10 C 1.39922 * 120.00429 * 174.79920 * 9 7 4 11 11 C 1.38957 * 120.03350 * 326.15273 * 10 9 7 12 12 C 1.38164 * 120.06641 * 179.76832 * 11 10 9 13 13 C 1.38164 * 120.13637 * 0.50564 * 12 11 10 14 14 C 1.38909 * 120.07131 * 359.74748 * 13 12 11 15 15 O 1.35752 * 120.03041 * 179.97438 * 14 13 12 16 16 C 1.34839 * 116.99710 * 185.92540 * 15 14 13 17 17 H 1.07993 * 119.99888 * 5.40242 * 16 15 14 18 18 C 1.38651 * 119.99684 * 185.40320 * 16 15 14 19 19 N 1.31559 * 120.00109 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99639 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47482 * 90.00157 * 20 18 16 22 22 H 1.48503 * 109.47200 * 210.00019 * 20 18 16 23 23 H 1.48497 * 109.47593 * 330.00266 * 20 18 16 24 24 C 1.38714 * 120.03599 * 146.42474 * 10 9 7 25 25 H 1.08998 * 109.46883 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46869 * 300.00056 * 1 2 3 27 27 H 1.08997 * 109.47103 * 60.00378 * 1 2 3 28 28 H 1.08997 * 109.47103 * 119.99622 * 2 1 3 29 29 H 1.08996 * 109.47320 * 239.99317 * 2 1 3 30 30 H 1.09000 * 109.46933 * 299.99234 * 3 2 1 31 31 H 1.08993 * 109.47215 * 59.99753 * 3 2 1 32 32 H 1.09002 * 109.46999 * 59.99802 * 6 4 3 33 33 H 1.08989 * 109.47555 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46504 * 300.00457 * 6 4 3 35 35 H 0.97002 * 119.99628 * 354.78889 * 9 7 4 36 36 H 1.08007 * 119.97040 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.92834 * 180.22704 * 12 11 10 38 38 H 1.08001 * 119.96183 * 179.76304 * 13 12 11 39 39 H 0.96999 * 119.99322 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.07107 * 359.96000 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8332 1.3083 7 6 4.0723 2.8579 -0.1233 8 8 3.2843 3.7763 -0.2037 9 7 5.3974 3.1032 -0.1448 10 6 5.8648 4.4029 -0.3688 11 6 5.1667 5.2571 -1.2137 12 6 5.6249 6.5422 -1.4317 13 6 6.7838 6.9786 -0.8190 14 6 7.4891 6.1278 0.0226 15 8 8.6280 6.5573 0.6238 16 6 9.3291 5.6463 1.3286 17 1 9.0258 4.6099 1.3237 18 6 10.4395 6.0404 2.0595 19 7 10.8092 7.3029 2.0650 20 14 11.4103 4.7785 3.0364 21 1 12.4837 4.2100 2.1820 22 1 12.0170 5.4319 4.2240 23 1 10.5024 3.6904 3.4800 24 6 7.0286 4.8382 0.2478 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.7161 -0.1906 1.3979 33 1 5.1694 0.8327 1.3086 34 1 3.7157 1.4228 2.1498 35 1 6.0271 2.3788 -0.0047 36 1 4.2630 4.9173 -1.6979 37 1 5.0786 7.2054 -2.0859 38 1 7.1416 7.9824 -0.9944 39 1 11.5862 7.5784 2.5761 40 1 7.5751 4.1750 0.9020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036987799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -79.262062 kcal Electronic energy + Delta-G solvation = -20915.380812 eV Core-core repulsion = 17694.325409 eV Total energy + Delta-G solvation = -3221.055403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69276 -40.44770 -38.31969 -36.87018 -35.70110 -34.24595 -32.95988 -30.94973 -30.12949 -27.52610 -27.32938 -25.41129 -23.52699 -23.21870 -21.79205 -20.88198 -19.76192 -19.30580 -18.05306 -17.22739 -16.84996 -16.61834 -16.15693 -16.02489 -15.69153 -15.48324 -15.29110 -14.87045 -14.57581 -14.29828 -14.00618 -13.58368 -13.47230 -13.28192 -13.12707 -12.76226 -12.74692 -12.59813 -12.47968 -12.16426 -12.11874 -11.82887 -11.75070 -11.46205 -11.38119 -11.27643 -10.79241 -10.66069 -9.37325 -8.89095 -8.46817 -6.15822 0.38194 0.67509 1.36121 1.45247 1.53785 1.61804 2.05034 2.18184 2.82851 3.15942 3.47541 3.57451 3.78549 3.95440 4.10121 4.28722 4.31536 4.37232 4.38006 4.44010 4.59382 4.65483 4.73601 4.80404 4.90782 4.93934 5.00405 5.04276 5.10352 5.13259 5.23882 5.31567 5.38390 5.44931 5.47046 5.53301 5.64951 5.65621 6.00976 6.15539 6.46213 6.97412 7.12628 7.76725 8.76335 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.003837 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.616142 B = 7296.189883 C = 8446.311528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.098 4.098 5 H 0.127 0.873 6 C -0.147 4.147 7 C 0.510 3.490 8 O -0.560 6.560 9 N -0.663 5.663 10 C 0.186 3.814 11 C -0.202 4.202 12 C -0.052 4.052 13 C -0.215 4.215 14 C 0.134 3.866 15 O -0.226 6.226 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.260 4.260 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.422 0.578 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 -18.082 -3.766 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.119 4.119 5 H 0.145 0.855 6 C -0.205 4.205 7 C 0.300 3.700 8 O -0.437 6.437 9 N -0.308 5.308 10 C 0.091 3.909 11 C -0.222 4.222 12 C -0.070 4.070 13 C -0.235 4.235 14 C 0.083 3.917 15 O -0.132 6.132 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.282 4.282 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.261 0.739 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.476 -17.151 -3.732 22.752 hybrid contribution 0.959 -0.024 0.572 1.117 sum -13.516 -17.175 -3.160 22.083 Atomic orbital electron populations 1.21783 0.95805 1.02105 1.01560 1.21572 0.95995 0.94857 1.03253 1.21424 0.92066 0.98134 1.02130 1.21417 0.97846 0.89970 1.02706 0.85505 1.21899 1.01892 1.02449 0.94220 1.21717 0.81031 0.93144 0.74116 1.90694 1.55891 1.47846 1.49278 1.43595 1.08364 1.08102 1.70781 1.17500 0.93155 0.86014 0.94198 1.20844 1.02803 0.95283 1.03312 1.20919 0.93530 0.95402 0.97170 1.20480 0.99038 1.00529 1.03480 1.19612 0.86836 0.93055 0.92193 1.83990 1.30733 1.38757 1.59758 1.21816 1.09012 0.90476 1.27650 0.87902 1.26618 0.97809 0.99598 0.98018 1.70192 1.26500 1.17859 1.41299 0.84579 0.77932 0.76579 0.77076 1.18674 1.19891 1.17354 1.20851 1.01425 0.97555 1.08371 0.91568 0.93247 0.93178 0.90474 0.90736 0.92591 0.92938 0.88465 0.91185 0.93338 0.73945 0.85347 0.82882 0.86261 0.91824 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.41 5.69 30.59 0.17 -1.24 16 3 C -0.10 -1.76 4.03 30.59 0.12 -1.64 16 4 C -0.10 -1.67 2.73 -11.54 -0.03 -1.70 16 5 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 6 C -0.15 -2.00 8.84 71.98 0.64 -1.37 16 7 C 0.51 13.94 6.89 87.66 0.60 14.55 16 8 O -0.56 -19.98 13.64 -3.04 -0.04 -20.02 16 9 N -0.66 -18.73 5.26 -303.56 -1.60 -20.33 16 10 C 0.19 6.99 6.27 38.14 0.24 7.23 16 11 C -0.20 -7.54 8.65 22.42 0.19 -7.35 16 12 C -0.05 -1.91 10.03 22.23 0.22 -1.69 16 13 C -0.22 -9.50 9.99 22.41 0.22 -9.27 16 14 C 0.13 6.77 6.64 22.56 0.15 6.92 16 15 O -0.23 -13.55 9.76 -22.85 -0.22 -13.78 16 16 C -0.41 -23.67 9.44 67.92 0.64 -23.03 16 17 H 0.10 5.32 5.30 -2.91 -0.02 5.30 16 18 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 19 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 20 Si 1.02 41.78 29.55 68.60 2.03 43.81 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 24 C -0.26 -11.42 9.04 22.51 0.20 -11.22 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.74 6.56 -2.39 -0.02 0.73 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.16 7.96 -2.39 -0.02 1.14 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 0.85 6.56 -2.39 -0.02 0.84 16 33 H 0.07 0.85 7.46 -2.39 -0.02 0.83 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 9.02 8.10 -92.71 -0.75 8.27 16 36 H 0.13 4.60 6.45 -2.91 -0.02 4.58 16 37 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 40 H 0.13 5.55 5.72 -2.91 -0.02 5.53 16 Total: -1.00 -74.46 332.38 5.32 -69.15 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.30 Total: 28.85 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.56 Total: -31.80 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.30 Total: -76.21 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.26 Total: -33.79 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.46 5.32 -69.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds