Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52999 * 109.47526 * 120.00180 * 2 1 3 5 5 N 1.46498 * 109.46954 * 177.88082 * 4 2 1 6 6 C 1.46504 * 119.99811 * 275.70506 * 5 4 2 7 7 C 1.50696 * 109.47166 * 285.88153 * 6 5 4 8 8 H 1.08000 * 120.00170 * 0.02562 * 7 6 5 9 9 C 1.37886 * 120.00186 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00319 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99443 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47330 * 90.00184 * 11 9 7 13 13 H 1.48509 * 109.46897 * 209.99990 * 11 9 7 14 14 H 1.48501 * 109.47287 * 329.99739 * 11 9 7 15 15 C 1.34780 * 120.00149 * 95.71179 * 5 4 2 16 16 O 1.21589 * 119.99897 * 6.64470 * 15 5 4 17 17 C 1.47533 * 119.99972 * 186.64801 * 15 5 4 18 18 C 1.39714 * 120.19280 * 325.31588 * 17 15 5 19 19 C 1.37789 * 119.90957 * 179.97438 * 18 17 15 20 20 C 1.38549 * 120.29945 * 0.02562 * 19 18 17 21 21 C 1.38056 * 120.39080 * 359.97438 * 20 19 18 22 22 C 1.38713 * 120.08257 * 359.97438 * 21 20 19 23 23 O 1.35655 * 120.14666 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.46733 * 299.99268 * 1 2 3 25 25 H 1.08989 * 109.47421 * 59.99459 * 1 2 3 26 26 H 1.09004 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47240 * 240.00717 * 2 1 3 28 28 H 1.09006 * 109.46571 * 65.11436 * 3 2 1 29 29 H 1.09001 * 109.47303 * 185.10536 * 3 2 1 30 30 H 1.08996 * 109.47767 * 305.11591 * 3 2 1 31 31 H 1.08997 * 109.46865 * 57.88399 * 4 2 1 32 32 H 1.08998 * 109.47217 * 297.87817 * 4 2 1 33 33 H 1.08994 * 109.46973 * 45.88945 * 6 5 4 34 34 H 1.08997 * 109.46913 * 165.88589 * 6 5 4 35 35 H 0.96998 * 120.00248 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.04407 * 0.25852 * 18 17 15 37 37 H 1.08000 * 119.84549 * 179.97438 * 19 18 17 38 38 H 1.07990 * 119.80616 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.96054 * 180.02562 * 21 20 19 40 40 H 0.96698 * 114.00109 * 90.00651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5042 -0.7656 1.2238 6 6 4.1921 -1.8264 0.4837 7 6 4.0805 -3.1228 1.2438 8 1 3.5497 -3.1537 2.1839 9 6 4.6559 -4.2697 0.7391 10 7 4.5580 -5.4012 1.4021 11 14 5.5745 -4.2162 -0.8866 12 1 7.0050 -3.9059 -0.6369 13 1 5.4643 -5.5347 -1.5610 14 1 4.9842 -3.1655 -1.7543 15 6 4.2182 0.1695 1.8814 16 8 3.6528 0.9768 2.5933 17 6 5.6858 0.2134 1.7372 18 6 6.4129 -0.9703 1.5882 19 6 7.7834 -0.9224 1.4535 20 6 8.4449 0.2949 1.4656 21 6 7.7387 1.4721 1.6121 22 6 6.3585 1.4426 1.7479 23 8 5.6633 2.5986 1.8914 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.7533 1.9292 0.9323 29 1 3.1261 1.4440 -0.0914 30 1 1.6038 1.9822 -0.8406 31 1 1.6461 -1.7374 1.2683 32 1 1.7082 -0.1860 2.1388 33 1 3.7336 -1.9403 -0.4985 34 1 5.2434 -1.5639 0.3656 35 1 4.9625 -6.2081 1.0468 36 1 5.9011 -1.9212 1.5740 37 1 8.3445 -1.8381 1.3388 38 1 9.5192 0.3231 1.3598 39 1 8.2613 2.4171 1.6201 40 1 5.3741 2.9900 1.0558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044289176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -38.968199 kcal Electronic energy + Delta-G solvation = -22552.327072 eV Core-core repulsion = 19333.018942 eV Total energy + Delta-G solvation = -3219.308130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22560 -38.37039 -36.52835 -35.86536 -34.31038 -32.42926 -30.88969 -29.50712 -28.19376 -26.87441 -25.95786 -23.29206 -22.29709 -22.16610 -20.09339 -18.96198 -17.80372 -17.12661 -16.66984 -15.97435 -15.58649 -15.05875 -14.63564 -14.48709 -14.21503 -14.02652 -13.71700 -13.41263 -12.92497 -12.69651 -12.35936 -12.22857 -11.99695 -11.88065 -11.58633 -11.46899 -11.18501 -11.08237 -10.93563 -10.64007 -10.61180 -10.29461 -10.20489 -10.11161 -9.69092 -9.09061 -8.89674 -8.47445 -8.36822 -7.70413 -6.32570 -4.35064 1.23052 1.55586 3.09034 3.18974 3.20584 3.36877 3.77753 4.04176 4.16515 4.43720 4.96294 5.06165 5.16209 5.21943 5.27069 5.34749 5.42037 5.57650 5.80854 5.85782 5.93393 5.97282 6.02545 6.10941 6.22333 6.28790 6.32692 6.35605 6.45383 6.52152 6.58891 6.65054 6.67629 6.74061 6.78811 7.09105 7.25332 7.41397 7.88544 8.05271 8.37798 8.74889 8.91615 9.25725 10.79237 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.009997 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.302141 B = 2800.107400 C = 4703.618856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.583 5.583 6 C 0.179 3.821 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.882 5.882 11 Si 0.862 3.138 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.262 1.262 15 C 0.558 3.442 16 O -0.544 6.544 17 C -0.156 4.156 18 C -0.079 4.079 19 C -0.147 4.147 20 C -0.088 4.088 21 C -0.169 4.169 22 C 0.151 3.849 23 O -0.481 6.481 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.269 0.731 36 H 0.184 0.816 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 10.552 -5.367 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C 0.001 3.999 5 N -0.312 5.312 6 C 0.058 3.942 7 C -0.581 4.581 8 H 0.100 0.900 9 C -0.125 4.125 10 N -0.519 5.519 11 Si 0.687 3.313 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.186 1.186 15 C 0.346 3.654 16 O -0.424 6.424 17 C -0.160 4.160 18 C -0.096 4.096 19 C -0.165 4.165 20 C -0.106 4.106 21 C -0.187 4.187 22 C 0.105 3.895 23 O -0.290 6.290 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.200 0.800 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.248 10.657 -4.400 11.746 hybrid contribution 0.539 -0.258 -1.415 1.536 sum 2.786 10.399 -5.815 12.236 Atomic orbital electron populations 1.21736 0.95022 1.01749 1.01387 1.21490 0.95525 0.96695 0.99513 1.21752 1.00553 0.95865 1.01237 1.21405 0.79942 1.01209 0.97390 1.47718 1.06123 1.27117 1.50253 1.20614 0.94416 0.86537 0.92604 1.21339 1.36865 0.91049 1.08872 0.90022 1.24891 0.95596 0.95159 0.96841 1.69879 1.43640 0.99850 1.38525 0.87060 0.81109 0.78466 0.84644 1.19301 1.20617 1.18608 1.17997 0.86262 0.81033 0.80083 1.90722 1.71705 1.41115 1.38839 1.20467 0.94543 0.93916 1.07067 1.22720 0.94391 1.00503 0.92029 1.21228 0.94627 0.98000 1.02610 1.21147 0.99691 0.92129 0.97647 1.21246 0.93165 0.99072 1.05255 1.18461 0.89633 0.84843 0.96559 1.84816 1.73999 1.36138 1.34047 0.92713 0.92985 0.92491 0.91232 0.92215 0.93477 0.93701 0.89954 0.90414 0.95519 0.92519 0.92126 0.79959 0.85468 0.85826 0.85482 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.11 -1.75 3.14 -90.62 -0.28 -2.04 16 3 C -0.14 -2.06 8.20 37.16 0.30 -1.75 16 4 C 0.12 2.30 4.96 -4.04 -0.02 2.28 16 5 N -0.58 -12.05 2.25 -176.30 -0.40 -12.45 16 6 C 0.18 3.91 3.79 -5.19 -0.02 3.89 16 7 C -0.54 -13.83 8.10 -34.44 -0.28 -14.11 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 11 Si 0.86 18.92 27.47 -169.99 -4.67 14.25 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 15 C 0.56 11.83 5.84 -12.47 -0.07 11.76 16 16 O -0.54 -12.51 14.86 -12.61 -0.19 -12.70 16 17 C -0.16 -3.05 5.52 -104.85 -0.58 -3.63 16 18 C -0.08 -1.51 7.42 -39.19 -0.29 -1.80 16 19 C -0.15 -2.36 10.02 -39.63 -0.40 -2.76 16 20 C -0.09 -1.21 10.03 -39.53 -0.40 -1.60 16 21 C -0.17 -2.41 9.98 -39.47 -0.39 -2.81 16 22 C 0.15 2.58 6.68 -38.70 -0.26 2.32 16 23 O -0.48 -7.80 12.13 -36.56 -0.44 -8.25 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.59 8.14 -51.94 -0.42 0.17 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 28 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 29 H 0.05 0.76 6.95 -51.93 -0.36 0.40 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.58 7.87 -51.93 -0.41 1.18 16 32 H 0.08 1.49 7.19 -51.93 -0.37 1.12 16 33 H 0.03 0.58 7.06 -51.93 -0.37 0.22 16 34 H 0.06 1.21 3.12 -52.76 -0.16 1.05 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.18 3.95 4.04 -52.49 -0.21 3.74 16 37 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.38 4.46 9.06 45.56 0.41 4.87 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -30.17 324.21 -7.34 -37.50 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.86 Total: 10.45 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.44 Total: -9.75 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.38 Total: -36.39 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.63 Total: -20.95 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.67 Total: 14.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.17 -7.34 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.464 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds