Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52999 * 109.47526 * 120.00180 * 2 1 3 5 5 N 1.46498 * 109.46954 * 177.88082 * 4 2 1 6 6 C 1.46504 * 119.99811 * 275.70506 * 5 4 2 7 7 C 1.50696 * 109.47166 * 285.88153 * 6 5 4 8 8 H 1.08000 * 120.00170 * 0.02562 * 7 6 5 9 9 C 1.37886 * 120.00186 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00319 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99443 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47330 * 90.00184 * 11 9 7 13 13 H 1.48509 * 109.46897 * 209.99990 * 11 9 7 14 14 H 1.48501 * 109.47287 * 329.99739 * 11 9 7 15 15 C 1.34780 * 120.00149 * 95.71179 * 5 4 2 16 16 O 1.21589 * 119.99897 * 6.64470 * 15 5 4 17 17 C 1.47533 * 119.99972 * 186.64801 * 15 5 4 18 18 C 1.39714 * 120.19280 * 325.31588 * 17 15 5 19 19 C 1.37789 * 119.90957 * 179.97438 * 18 17 15 20 20 C 1.38549 * 120.29945 * 0.02562 * 19 18 17 21 21 C 1.38056 * 120.39080 * 359.97438 * 20 19 18 22 22 C 1.38713 * 120.08257 * 359.97438 * 21 20 19 23 23 O 1.35655 * 120.14666 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.46733 * 299.99268 * 1 2 3 25 25 H 1.08989 * 109.47421 * 59.99459 * 1 2 3 26 26 H 1.09004 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47240 * 240.00717 * 2 1 3 28 28 H 1.09006 * 109.46571 * 65.11436 * 3 2 1 29 29 H 1.09001 * 109.47303 * 185.10536 * 3 2 1 30 30 H 1.08996 * 109.47767 * 305.11591 * 3 2 1 31 31 H 1.08997 * 109.46865 * 57.88399 * 4 2 1 32 32 H 1.08998 * 109.47217 * 297.87817 * 4 2 1 33 33 H 1.08994 * 109.46973 * 45.88945 * 6 5 4 34 34 H 1.08997 * 109.46913 * 165.88589 * 6 5 4 35 35 H 0.96998 * 120.00248 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.04407 * 0.25852 * 18 17 15 37 37 H 1.08000 * 119.84549 * 179.97438 * 19 18 17 38 38 H 1.07990 * 119.80616 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.96054 * 180.02562 * 21 20 19 40 40 H 0.96698 * 114.00109 * 90.00651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5042 -0.7656 1.2238 6 6 4.1921 -1.8264 0.4837 7 6 4.0805 -3.1228 1.2438 8 1 3.5497 -3.1537 2.1839 9 6 4.6559 -4.2697 0.7391 10 7 4.5580 -5.4012 1.4021 11 14 5.5745 -4.2162 -0.8866 12 1 7.0050 -3.9059 -0.6369 13 1 5.4643 -5.5347 -1.5610 14 1 4.9842 -3.1655 -1.7543 15 6 4.2182 0.1695 1.8814 16 8 3.6528 0.9768 2.5933 17 6 5.6858 0.2134 1.7372 18 6 6.4129 -0.9703 1.5882 19 6 7.7834 -0.9224 1.4535 20 6 8.4449 0.2949 1.4656 21 6 7.7387 1.4721 1.6121 22 6 6.3585 1.4426 1.7479 23 8 5.6633 2.5986 1.8914 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.7533 1.9292 0.9323 29 1 3.1261 1.4440 -0.0914 30 1 1.6038 1.9822 -0.8406 31 1 1.6461 -1.7374 1.2683 32 1 1.7082 -0.1860 2.1388 33 1 3.7336 -1.9403 -0.4985 34 1 5.2434 -1.5639 0.3656 35 1 4.9625 -6.2081 1.0468 36 1 5.9011 -1.9212 1.5740 37 1 8.3445 -1.8381 1.3388 38 1 9.5192 0.3231 1.3598 39 1 8.2613 2.4171 1.6201 40 1 5.3741 2.9900 1.0558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044289176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -57.725880 kcal Electronic energy + Delta-G solvation = -22553.140466 eV Core-core repulsion = 19333.018942 eV Total energy + Delta-G solvation = -3220.121524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68445 -39.76942 -37.87006 -37.32608 -35.86622 -34.32803 -32.19010 -30.81979 -29.98396 -28.06958 -27.38014 -24.92374 -23.84419 -23.47594 -21.42248 -20.43498 -19.12316 -19.06218 -18.19499 -17.51069 -16.92093 -16.50859 -16.17430 -15.95713 -15.64646 -15.41465 -15.11309 -14.80830 -14.55551 -14.27161 -13.81298 -13.57426 -13.23936 -13.13099 -12.97605 -12.85024 -12.70196 -12.62802 -12.38750 -12.09434 -11.92805 -11.84504 -11.72396 -11.58728 -11.48506 -10.85425 -10.63857 -9.85329 -9.65534 -9.36537 -8.34545 -6.42915 -0.07043 0.30728 1.36827 1.39428 1.49021 1.86500 2.23451 2.30655 2.71620 2.98041 3.24740 3.61677 3.92364 3.99612 4.04426 4.15429 4.17146 4.42470 4.51186 4.56888 4.63944 4.68309 4.77573 4.80881 4.84008 4.94036 4.99622 5.02570 5.05937 5.17028 5.33165 5.34255 5.36670 5.40452 5.43602 5.52826 5.72249 5.87088 6.11708 6.59586 6.65414 6.80012 7.17948 7.31393 8.81353 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.009997 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.302141 B = 2800.107400 C = 4703.618856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.128 4.128 4 C 0.120 3.880 5 N -0.587 5.587 6 C 0.190 3.810 7 C -0.542 4.542 8 H 0.029 0.971 9 C 0.028 3.972 10 N -0.934 5.934 11 Si 0.927 3.073 12 H -0.246 1.246 13 H -0.282 1.282 14 H -0.244 1.244 15 C 0.554 3.446 16 O -0.572 6.572 17 C -0.189 4.189 18 C -0.103 4.103 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.146 3.854 23 O -0.494 6.494 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.271 0.729 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 12.596 -7.651 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.185 4.185 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.069 3.931 7 C -0.580 4.580 8 H 0.047 0.953 9 C -0.172 4.172 10 N -0.573 5.573 11 Si 0.749 3.251 12 H -0.169 1.169 13 H -0.208 1.208 14 H -0.167 1.167 15 C 0.344 3.656 16 O -0.454 6.454 17 C -0.192 4.192 18 C -0.121 4.121 19 C -0.167 4.167 20 C -0.085 4.085 21 C -0.174 4.174 22 C 0.100 3.900 23 O -0.306 6.306 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.188 0.812 39 H 0.181 0.819 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.606 12.724 -6.695 15.097 hybrid contribution -0.195 -0.842 -0.571 1.036 sum 4.411 11.882 -7.266 14.610 Atomic orbital electron populations 1.21706 0.92736 1.02232 1.02668 1.21444 0.97384 0.96572 0.97209 1.21664 0.99718 0.95449 1.01684 1.21500 0.79317 1.00541 0.98900 1.47796 1.06835 1.26869 1.50130 1.20443 0.95681 0.84991 0.91975 1.21359 1.36065 0.93294 1.07292 0.95287 1.25736 0.96347 0.94276 1.00840 1.70035 1.45483 1.00851 1.40925 0.86014 0.80790 0.78744 0.79601 1.16939 1.20791 1.16732 1.18413 0.87398 0.80480 0.79317 1.90683 1.72576 1.42220 1.39933 1.20474 0.93288 0.95468 1.09978 1.22414 0.96031 0.98961 0.94712 1.21459 0.93240 1.00020 1.02020 1.21620 1.01792 0.90559 0.94555 1.21643 0.91734 1.00986 1.03041 1.18682 0.90863 0.84089 0.96341 1.84759 1.74299 1.35746 1.35784 0.92498 0.90585 0.92479 0.91470 0.93573 0.94903 0.90837 0.91689 0.91644 0.95075 0.90739 0.91970 0.83180 0.83927 0.81210 0.81903 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.19 71.98 0.66 -2.70 16 2 C -0.11 -3.30 3.14 -10.79 -0.03 -3.34 16 3 C -0.13 -3.75 8.20 71.98 0.59 -3.16 16 4 C 0.12 4.72 4.96 86.38 0.43 5.15 16 5 N -0.59 -25.37 2.25 -829.94 -1.86 -27.23 16 6 C 0.19 8.51 3.79 85.63 0.32 8.84 16 7 C -0.54 -29.11 8.10 25.60 0.21 -28.90 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.03 1.51 5.47 84.66 0.46 1.97 16 10 N -0.93 -54.56 13.96 21.45 0.30 -54.26 16 11 Si 0.93 38.69 27.47 68.60 1.88 40.58 16 12 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 15 C 0.55 24.28 5.84 86.69 0.51 24.79 16 16 O -0.57 -27.29 14.86 13.12 0.19 -27.09 16 17 C -0.19 -7.34 5.52 -20.01 -0.11 -7.45 16 18 C -0.10 -3.92 7.42 22.52 0.17 -3.75 16 19 C -0.15 -4.39 10.02 22.24 0.22 -4.17 16 20 C -0.07 -1.52 10.03 22.30 0.22 -1.30 16 21 C -0.16 -3.78 9.98 22.34 0.22 -3.55 16 22 C 0.15 4.71 6.68 22.84 0.15 4.87 16 23 O -0.49 -15.29 12.13 -72.59 -0.88 -16.17 16 24 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 28 H 0.05 1.47 8.06 -2.38 -0.02 1.45 16 29 H 0.03 1.04 6.95 -2.39 -0.02 1.02 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.71 7.87 -2.39 -0.02 2.69 16 32 H 0.07 2.69 7.19 -2.39 -0.02 2.67 16 33 H 0.03 1.36 7.06 -2.39 -0.02 1.34 16 34 H 0.08 3.18 3.12 -3.17 -0.01 3.17 16 35 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.15 6.69 4.04 -2.91 -0.01 6.68 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.17 2.35 8.06 -2.92 -0.02 2.32 16 39 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.40 8.69 9.06 -74.06 -0.67 8.02 16 Total: -1.00 -69.77 324.21 3.98 -65.79 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.32 Total: 31.08 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.03 Total: -12.71 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.57 Total: -81.49 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.69 Total: -43.26 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.88 Total: 40.58 kcal Total: -69.77 3.98 -65.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.066 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds