Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52993 * 109.47449 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.35714 * 117.00012 * 180.02562 * 5 4 3 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37684 * 120.08999 * 180.25862 * 7 6 5 9 9 C 1.39795 * 119.90611 * 359.44742 * 8 7 6 10 10 C 1.47507 * 120.09244 * 180.30054 * 9 8 7 11 11 O 1.21616 * 119.99672 * 318.98856 * 10 9 8 12 12 N 1.34779 * 119.99662 * 138.99178 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76356 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76282 * 12 10 9 15 15 H 1.08003 * 119.99898 * 317.83276 * 14 12 10 16 16 C 1.39013 * 119.99952 * 137.83921 * 14 12 10 17 17 N 1.31384 * 120.00562 * 44.08722 * 16 14 12 18 18 Si 1.86805 * 119.99905 * 224.08618 * 16 14 12 19 19 H 1.48500 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47166 * 120.00006 * 18 16 14 21 21 H 1.48504 * 109.47089 * 239.99996 * 18 16 14 22 22 C 1.39798 * 119.81657 * 0.27566 * 9 8 7 23 23 C 1.37684 * 119.89694 * 0.02562 * 22 9 8 24 24 H 1.09002 * 109.46971 * 299.99862 * 1 2 3 25 25 H 1.08997 * 109.47643 * 59.99700 * 1 2 3 26 26 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00138 * 2 1 3 28 28 H 1.09000 * 109.47363 * 119.99855 * 2 1 3 29 29 H 1.09002 * 109.47052 * 60.00188 * 3 2 1 30 30 H 1.09000 * 109.46850 * 300.00169 * 3 2 1 31 31 H 1.09002 * 109.47039 * 59.99937 * 4 3 2 32 32 H 1.09007 * 109.47345 * 300.00423 * 4 3 2 33 33 H 1.07997 * 119.95357 * 359.97438 * 7 6 5 34 34 H 1.08008 * 120.04764 * 179.72377 * 8 7 6 35 35 H 1.08998 * 109.47226 * 98.75939 * 13 12 10 36 36 H 1.09000 * 109.46379 * 218.75439 * 13 12 10 37 37 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 38 38 H 0.96994 * 120.00353 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04948 * 180.02562 * 22 9 8 40 40 H 1.08003 * 119.94967 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3917 2.9677 -0.0010 7 6 6.2367 1.8639 -0.0088 8 6 7.6022 2.0399 -0.0044 9 6 8.1386 3.3308 -0.0039 10 6 9.6010 3.5241 -0.0060 11 8 10.3090 2.8151 0.6833 12 7 10.1524 4.4864 -0.7718 13 6 9.2955 5.4487 -1.4688 14 6 11.5133 4.5645 -0.8982 15 1 12.1447 4.4288 -0.0326 16 6 12.0825 4.8188 -2.1407 17 7 11.5754 5.7490 -2.9177 18 14 13.5685 3.8378 -2.7057 19 1 13.9437 2.8582 -1.6547 20 1 13.2371 3.1159 -3.9604 21 1 14.7063 4.7601 -2.9510 22 6 7.2853 4.4381 -0.0020 23 6 5.9209 4.2531 -0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.8214 0.8669 -0.0135 34 1 8.2581 1.1817 -0.0059 35 1 9.2490 6.3751 -0.8964 36 1 9.7074 5.6526 -2.4571 37 1 8.2926 5.0344 -1.5715 38 1 11.9723 5.9261 -3.7849 39 1 7.6956 5.4371 -0.0020 40 1 5.2609 5.1079 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -38.793006 kcal Electronic energy + Delta-G solvation = -20801.668028 eV Core-core repulsion = 17582.367495 eV Total energy + Delta-G solvation = -3219.300533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09422 -38.69176 -36.75855 -35.27150 -34.66744 -32.04708 -30.88222 -30.22364 -28.98219 -26.29684 -24.88918 -24.20299 -22.54042 -21.91656 -21.16590 -19.42085 -17.98645 -17.04497 -16.52764 -16.31162 -15.65108 -14.97099 -14.91466 -14.37321 -14.25717 -14.14845 -13.72730 -13.52740 -13.24954 -12.99581 -12.89594 -12.45628 -12.15135 -11.98312 -11.62422 -11.57400 -11.45128 -11.39704 -11.25118 -11.06476 -10.80521 -10.60720 -10.53685 -10.29994 -10.14372 -8.67924 -8.59563 -8.46348 -7.83155 -7.63589 -6.63286 -3.86117 1.51282 1.66204 3.14278 3.15464 3.29800 3.41059 3.74703 4.10366 4.37560 4.54741 4.57978 4.68496 4.71558 4.93255 5.00018 5.02090 5.08629 5.17315 5.24961 5.41769 5.44286 5.50901 5.62180 5.65376 5.74206 5.81347 5.86275 5.90608 5.97041 6.30060 6.39146 6.51401 6.62183 6.70187 6.91274 6.97088 7.21211 7.54961 7.63312 8.30824 8.53396 9.14601 9.35506 10.02172 10.39571 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036324 B = 0.003162 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.649605 B = 8852.462555 C = 9005.611740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.318 6.318 6 C 0.126 3.874 7 C -0.216 4.216 8 C -0.040 4.040 9 C -0.130 4.130 10 C 0.490 3.510 11 O -0.582 6.582 12 N -0.436 5.436 13 C 0.042 3.958 14 C -0.346 4.346 15 H 0.097 0.903 16 C 0.074 3.926 17 N -0.825 5.825 18 Si 0.883 3.117 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.283 1.283 22 C -0.063 4.063 23 C -0.160 4.160 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.272 0.728 39 H 0.141 0.859 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 -6.232 1.459 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.232 6.232 6 C 0.081 3.919 7 C -0.234 4.234 8 C -0.060 4.060 9 C -0.133 4.133 10 C 0.279 3.721 11 O -0.468 6.468 12 N -0.154 5.154 13 C -0.101 4.101 14 C -0.472 4.472 15 H 0.114 0.886 16 C -0.135 4.135 17 N -0.458 5.458 18 Si 0.707 3.293 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.081 4.081 23 C -0.179 4.179 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.785 -6.275 1.588 19.869 hybrid contribution 0.732 -0.493 -0.473 1.002 sum -18.052 -6.768 1.116 19.312 Atomic orbital electron populations 1.21749 0.95265 1.01801 1.02075 1.21440 0.96341 0.95744 1.02480 1.21574 0.92764 0.97631 1.03694 1.22809 0.95095 0.82326 1.01500 1.85966 1.19512 1.28856 1.88827 1.19084 0.81721 0.94233 0.96863 1.21076 0.94083 0.97686 1.10604 1.20933 0.93802 0.96674 0.94543 1.20266 0.95151 0.93593 1.04339 1.17974 0.86071 0.82672 0.85366 1.90609 1.62771 1.48990 1.44380 1.43328 1.06321 1.23817 1.41945 1.22952 0.93882 0.91266 1.01993 1.19093 0.80638 1.52855 0.94596 0.88575 1.25506 0.98806 0.93792 0.95390 1.70032 1.41845 1.22345 1.11562 0.86640 0.81572 0.81920 0.79165 1.18554 1.20290 1.20883 1.21498 0.91886 0.99433 0.95329 1.20290 0.94975 0.94514 1.08080 0.92569 0.92550 0.92531 0.91640 0.91650 0.90859 0.90845 0.92063 0.92081 0.85685 0.85267 0.94679 0.86670 0.93231 0.91753 0.84139 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.95 5.58 -26.73 -0.15 -1.10 16 4 C 0.06 0.58 4.73 37.15 0.18 0.76 16 5 O -0.32 -4.30 10.12 -18.85 -0.19 -4.49 16 6 C 0.13 1.93 6.70 -39.01 -0.26 1.67 16 7 C -0.22 -3.31 9.01 -39.50 -0.36 -3.66 16 8 C -0.04 -0.74 9.64 -39.20 -0.38 -1.12 16 9 C -0.13 -2.71 5.30 -104.95 -0.56 -3.26 16 10 C 0.49 12.61 7.26 -12.48 -0.09 12.52 16 11 O -0.58 -16.91 16.84 5.26 0.09 -16.82 16 12 N -0.44 -11.48 2.99 -123.40 -0.37 -11.85 16 13 C 0.04 0.95 8.57 59.85 0.51 1.46 16 14 C -0.35 -9.83 8.74 -15.00 -0.13 -9.96 16 15 H 0.10 2.88 7.94 -52.48 -0.42 2.46 16 16 C 0.07 1.98 5.32 -17.46 -0.09 1.88 16 17 N -0.82 -21.39 10.79 55.50 0.60 -20.79 16 18 Si 0.88 20.49 29.69 -169.99 -5.05 15.44 16 19 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.06 -1.12 7.34 -39.20 -0.29 -1.41 16 23 C -0.16 -2.50 9.97 -39.50 -0.39 -2.90 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 7.64 -51.93 -0.40 0.18 16 32 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.13 1.55 6.28 -52.49 -0.33 1.22 16 34 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 35 H 0.03 0.75 7.79 -51.93 -0.40 0.35 16 36 H 0.12 2.82 5.13 -51.93 -0.27 2.55 16 37 H 0.05 0.99 4.58 -51.93 -0.24 0.75 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.14 2.42 5.73 -52.49 -0.30 2.12 16 40 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -31.30 329.93 -7.44 -38.74 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.69 Total: 1.36 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.80 Total: -6.56 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.23 Total: -32.64 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.10 Total: -21.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.05 Total: 15.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.30 -7.44 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.054 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds