Wall clock time and date at job start Mon Mar 30 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52993 * 109.47449 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.35714 * 117.00012 * 180.02562 * 5 4 3 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37684 * 120.08999 * 180.25862 * 7 6 5 9 9 C 1.39795 * 119.90611 * 359.44742 * 8 7 6 10 10 C 1.47507 * 120.09244 * 180.30054 * 9 8 7 11 11 O 1.21616 * 119.99672 * 318.98856 * 10 9 8 12 12 N 1.34779 * 119.99662 * 138.99178 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76356 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76282 * 12 10 9 15 15 H 1.08003 * 119.99898 * 317.83276 * 14 12 10 16 16 C 1.39013 * 119.99952 * 137.83921 * 14 12 10 17 17 N 1.31384 * 120.00562 * 44.08722 * 16 14 12 18 18 Si 1.86805 * 119.99905 * 224.08618 * 16 14 12 19 19 H 1.48500 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47166 * 120.00006 * 18 16 14 21 21 H 1.48504 * 109.47089 * 239.99996 * 18 16 14 22 22 C 1.39798 * 119.81657 * 0.27566 * 9 8 7 23 23 C 1.37684 * 119.89694 * 0.02562 * 22 9 8 24 24 H 1.09002 * 109.46971 * 299.99862 * 1 2 3 25 25 H 1.08997 * 109.47643 * 59.99700 * 1 2 3 26 26 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00138 * 2 1 3 28 28 H 1.09000 * 109.47363 * 119.99855 * 2 1 3 29 29 H 1.09002 * 109.47052 * 60.00188 * 3 2 1 30 30 H 1.09000 * 109.46850 * 300.00169 * 3 2 1 31 31 H 1.09002 * 109.47039 * 59.99937 * 4 3 2 32 32 H 1.09007 * 109.47345 * 300.00423 * 4 3 2 33 33 H 1.07997 * 119.95357 * 359.97438 * 7 6 5 34 34 H 1.08008 * 120.04764 * 179.72377 * 8 7 6 35 35 H 1.08998 * 109.47226 * 98.75939 * 13 12 10 36 36 H 1.09000 * 109.46379 * 218.75439 * 13 12 10 37 37 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 38 38 H 0.96994 * 120.00353 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04948 * 180.02562 * 22 9 8 40 40 H 1.08003 * 119.94967 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3917 2.9677 -0.0010 7 6 6.2367 1.8639 -0.0088 8 6 7.6022 2.0399 -0.0044 9 6 8.1386 3.3308 -0.0039 10 6 9.6010 3.5241 -0.0060 11 8 10.3090 2.8151 0.6833 12 7 10.1524 4.4864 -0.7718 13 6 9.2955 5.4487 -1.4688 14 6 11.5133 4.5645 -0.8982 15 1 12.1447 4.4288 -0.0326 16 6 12.0825 4.8188 -2.1407 17 7 11.5754 5.7490 -2.9177 18 14 13.5685 3.8378 -2.7057 19 1 13.9437 2.8582 -1.6547 20 1 13.2371 3.1159 -3.9604 21 1 14.7063 4.7601 -2.9510 22 6 7.2853 4.4381 -0.0020 23 6 5.9209 4.2531 -0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.8214 0.8669 -0.0135 34 1 8.2581 1.1817 -0.0059 35 1 9.2490 6.3751 -0.8964 36 1 9.7074 5.6526 -2.4571 37 1 8.2926 5.0344 -1.5715 38 1 11.9723 5.9261 -3.7849 39 1 7.6956 5.4371 -0.0020 40 1 5.2609 5.1079 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:48 Heat of formation + Delta-G solvation = -56.727057 kcal Electronic energy + Delta-G solvation = -20802.445707 eV Core-core repulsion = 17582.367495 eV Total energy + Delta-G solvation = -3220.078211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41668 -40.29098 -38.12996 -36.70138 -35.94931 -34.01854 -32.17210 -31.46520 -29.94387 -28.17614 -26.66316 -25.15629 -23.99528 -23.00134 -21.88603 -21.14122 -19.25871 -18.92304 -18.03160 -17.31816 -17.01007 -16.77419 -16.18087 -15.94335 -15.62881 -15.50890 -15.03551 -14.80119 -14.39249 -14.27534 -14.05651 -13.89742 -13.59750 -13.30518 -13.16498 -13.09111 -12.82358 -12.53539 -12.33973 -12.15576 -12.02319 -11.98508 -11.78570 -11.65407 -11.41570 -10.60969 -10.48326 -10.02329 -9.64862 -9.18149 -8.65497 -5.97281 0.10674 0.34233 1.27907 1.39036 1.53200 2.05408 2.15049 2.21232 2.63784 2.81668 3.16446 3.77739 3.84189 3.94851 3.96529 4.07326 4.16141 4.25180 4.36091 4.36913 4.49785 4.56802 4.65716 4.70034 4.87973 4.88779 4.93466 5.02050 5.03595 5.17106 5.24191 5.25717 5.29725 5.34338 5.45642 5.51059 5.63248 5.66650 6.18341 6.40976 6.53342 7.10071 7.37044 8.02657 8.37711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036324 B = 0.003162 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.649605 B = 8852.462555 C = 9005.611740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.047 3.953 5 O -0.319 6.319 6 C 0.140 3.860 7 C -0.205 4.205 8 C -0.048 4.048 9 C -0.164 4.164 10 C 0.481 3.519 11 O -0.632 6.632 12 N -0.449 5.449 13 C 0.049 3.951 14 C -0.396 4.396 15 H 0.062 0.938 16 C 0.050 3.950 17 N -0.830 5.830 18 Si 0.947 3.053 19 H -0.283 1.283 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.062 4.062 23 C -0.155 4.155 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.284 0.716 39 H 0.143 0.857 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 -6.767 0.390 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.028 4.028 5 O -0.233 6.233 6 C 0.094 3.906 7 C -0.223 4.223 8 C -0.067 4.067 9 C -0.167 4.167 10 C 0.272 3.728 11 O -0.521 6.521 12 N -0.167 5.167 13 C -0.093 4.093 14 C -0.521 4.521 15 H 0.079 0.921 16 C -0.160 4.160 17 N -0.463 5.463 18 Si 0.769 3.231 19 H -0.208 1.208 20 H -0.189 1.189 21 H -0.189 1.189 22 C -0.080 4.080 23 C -0.173 4.173 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.140 0.860 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.161 0.839 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.289 -6.776 0.486 22.346 hybrid contribution 1.317 -0.348 -0.119 1.367 sum -19.972 -7.124 0.367 21.208 Atomic orbital electron populations 1.21757 0.94791 1.02287 1.02137 1.21438 0.96727 0.94689 1.02926 1.21571 0.91262 0.98687 1.03643 1.23166 0.96359 0.80748 1.02496 1.85995 1.18041 1.31197 1.88074 1.19205 0.82708 0.94028 0.94642 1.21295 0.92497 0.99525 1.09031 1.20970 0.95257 0.95512 0.94989 1.19964 0.92304 0.95750 1.08728 1.18773 0.88232 0.81660 0.84140 1.90542 1.64718 1.50603 1.46275 1.43521 1.06127 1.24732 1.42277 1.22917 0.94577 0.91070 1.00709 1.18900 0.81837 1.56574 0.94780 0.92061 1.26049 1.01531 0.93644 0.94809 1.70017 1.42691 1.21658 1.11894 0.85699 0.79096 0.80097 0.78197 1.20792 1.18902 1.18851 1.21457 0.92643 0.98565 0.95362 1.20525 0.94146 0.95917 1.06734 0.92521 0.92525 0.91876 0.91223 0.91211 0.90931 0.90941 0.91026 0.91054 0.82411 0.86044 0.93963 0.88217 0.90434 0.90545 0.83937 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.20 5.93 30.59 0.18 -1.02 16 3 C -0.11 -1.48 5.58 30.59 0.17 -1.31 16 4 C 0.05 0.77 4.73 71.98 0.34 1.11 16 5 O -0.32 -7.44 10.12 -90.36 -0.91 -8.36 16 6 C 0.14 3.84 6.70 22.64 0.15 3.99 16 7 C -0.21 -5.75 9.01 22.33 0.20 -5.55 16 8 C -0.05 -1.75 9.64 22.52 0.22 -1.53 16 9 C -0.16 -6.90 5.30 -20.08 -0.11 -7.01 16 10 C 0.48 25.88 7.26 86.69 0.63 26.51 16 11 O -0.63 -39.01 16.84 -4.08 -0.07 -39.08 16 12 N -0.45 -24.58 2.99 -662.57 -1.98 -26.56 16 13 C 0.05 2.26 8.57 127.77 1.10 3.35 16 14 C -0.40 -23.52 8.74 84.09 0.74 -22.78 16 15 H 0.06 3.96 7.94 -2.91 -0.02 3.94 16 16 C 0.05 2.68 5.32 84.95 0.45 3.13 16 17 N -0.83 -42.96 10.79 21.67 0.23 -42.73 16 18 Si 0.95 42.74 29.69 68.60 2.04 44.78 16 19 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 C -0.06 -2.13 7.34 22.52 0.17 -1.97 16 23 C -0.15 -4.40 9.97 22.32 0.22 -4.18 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.07 7.64 -2.39 -0.02 1.05 16 32 H 0.07 1.07 7.67 -2.38 -0.02 1.05 16 33 H 0.16 3.32 6.28 -2.91 -0.02 3.30 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.04 1.83 7.79 -2.39 -0.02 1.81 16 36 H 0.10 4.90 5.13 -2.39 -0.01 4.89 16 37 H 0.08 3.06 4.58 -2.39 -0.01 3.05 16 38 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 39 H 0.14 4.80 5.73 -2.91 -0.02 4.78 16 40 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.27 329.93 5.51 -64.76 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.03 Total: 15.10 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.17 Total: -7.92 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.75 Total: -69.29 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.98 Total: -47.43 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.04 Total: 44.78 kcal Total: -70.27 5.51 -64.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.034 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds