Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 C 1.53001 * 109.46762 * 119.99876 * 2 1 3 5 5 N 1.46505 * 109.46500 * 175.00146 * 4 2 1 6 6 C 1.46503 * 120.00128 * 96.20489 * 5 4 2 7 7 C 1.50696 * 109.47131 * 73.65452 * 6 5 4 8 8 H 1.08009 * 119.99994 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00039 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99675 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99725 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47124 * 90.00269 * 11 9 7 13 13 H 1.48506 * 109.46824 * 210.00229 * 11 9 7 14 14 H 1.48505 * 109.47035 * 330.00022 * 11 9 7 15 15 C 1.34780 * 120.00036 * 276.20038 * 5 4 2 16 16 O 1.21558 * 119.99754 * 2.67015 * 15 5 4 17 17 C 1.47852 * 120.00110 * 182.67362 * 15 5 4 18 18 C 1.39606 * 120.12141 * 28.26828 * 17 15 5 19 19 C 1.37956 * 119.96914 * 179.72073 * 18 17 15 20 20 C 1.38296 * 120.20417 * 0.55644 * 19 18 17 21 21 C 1.38801 * 120.23826 * 359.71860 * 20 19 18 22 22 O 1.35913 * 119.98562 * 179.97438 * 21 20 19 23 23 C 1.38501 * 120.03395 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47054 * 299.99905 * 1 2 3 26 26 H 1.08995 * 109.47224 * 60.00018 * 1 2 3 27 27 H 1.08993 * 109.46913 * 240.00095 * 2 1 3 28 28 H 1.09003 * 109.46704 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47122 * 300.00045 * 3 2 1 30 30 H 1.09002 * 109.47144 * 60.00150 * 3 2 1 31 31 H 1.09001 * 109.47222 * 294.99544 * 4 2 1 32 32 H 1.08996 * 109.47104 * 55.00146 * 4 2 1 33 33 H 1.08999 * 109.46841 * 193.65730 * 6 5 4 34 34 H 1.08997 * 109.46760 * 313.65349 * 6 5 4 35 35 H 0.97008 * 119.99377 * 179.97438 * 10 9 7 36 36 H 1.08002 * 120.01139 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.90250 * 180.28067 * 19 18 17 38 38 H 1.08000 * 119.87571 * 179.74589 * 20 19 18 39 39 H 0.96697 * 114.00279 * 270.02654 * 22 21 20 40 40 H 1.07996 * 120.10395 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.3339 0.1626 1.8784 7 6 4.2807 -0.0820 3.3645 8 1 3.6855 -0.8932 3.7573 9 6 4.9917 0.7298 4.2227 10 7 4.9455 0.5160 5.5195 11 14 6.0215 2.1324 3.5432 12 1 5.1926 3.3620 3.4644 13 1 7.1813 2.3737 4.4387 14 1 6.5092 1.7762 2.1865 15 6 4.0762 -1.8328 0.5038 16 8 3.3857 -2.6251 -0.1070 17 6 5.5480 -1.9732 0.4934 18 6 6.3033 -1.5139 1.5740 19 6 7.6759 -1.6517 1.5636 20 6 8.3085 -2.2335 0.4801 21 6 7.5665 -2.6879 -0.6013 22 8 8.1936 -3.2584 -1.6637 23 6 6.1875 -2.5594 -0.5989 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.7517 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 5.3636 0.0734 1.5321 34 1 3.9631 1.1643 1.6615 35 1 5.4461 1.0870 6.1232 36 1 5.8127 -1.0554 2.4199 37 1 8.2587 -1.3001 2.4021 38 1 9.3837 -2.3350 0.4757 39 1 8.4479 -2.6308 -2.3538 40 1 5.6090 -2.9129 -1.4395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -43.030700 kcal Electronic energy + Delta-G solvation = -22216.594252 eV Core-core repulsion = 18997.109959 eV Total energy + Delta-G solvation = -3219.484293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13467 -38.69762 -36.42050 -36.10952 -34.22506 -32.48484 -30.80202 -29.65760 -28.23538 -26.86961 -26.00205 -23.29445 -22.29315 -22.08190 -20.21677 -19.17041 -17.72817 -17.17585 -16.29338 -16.02818 -15.81348 -14.97412 -14.82088 -14.65295 -14.37278 -13.91118 -13.50603 -13.42879 -13.14106 -12.67756 -12.53242 -12.30526 -11.97013 -11.87102 -11.67817 -11.47653 -11.23446 -11.00242 -10.92266 -10.70337 -10.50328 -10.35374 -10.28604 -10.04203 -9.74558 -9.22424 -8.90349 -8.70023 -8.19670 -7.79808 -6.37904 -4.40890 1.24284 1.58666 3.07716 3.16221 3.18440 3.30998 3.68684 4.09818 4.12767 4.41576 4.90514 5.03619 5.20886 5.25173 5.26591 5.39190 5.41080 5.75202 5.79234 5.84865 5.93214 5.99301 6.08027 6.11333 6.18557 6.24691 6.26757 6.34551 6.38886 6.56666 6.57607 6.66768 6.71909 6.81148 6.84461 7.11824 7.19590 7.36965 7.77329 7.98291 8.31406 8.69191 8.81763 9.19724 10.73301 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.008784 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.376617 B = 3186.671545 C = 5003.265378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.128 3.872 5 N -0.578 5.578 6 C 0.179 3.821 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.879 5.879 11 Si 0.862 3.138 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.259 1.259 15 C 0.556 3.444 16 O -0.562 6.562 17 C -0.117 4.117 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.126 4.126 21 C 0.075 3.925 22 O -0.499 6.499 23 C -0.093 4.093 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.270 0.730 36 H 0.193 0.807 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.383 0.617 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 1.282 -10.232 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.005 3.995 5 N -0.306 5.306 6 C 0.059 3.941 7 C -0.584 4.584 8 H 0.101 0.899 9 C -0.124 4.124 10 N -0.515 5.515 11 Si 0.687 3.313 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.183 1.183 15 C 0.345 3.655 16 O -0.443 6.443 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.145 4.145 21 C 0.031 3.969 22 O -0.308 6.308 23 C -0.112 4.112 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.210 0.790 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.238 0.762 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.618 0.443 -10.009 10.148 hybrid contribution 0.769 1.256 -0.379 1.521 sum 2.387 1.699 -10.388 10.793 Atomic orbital electron populations 1.21739 0.95122 1.01584 1.01445 1.21489 0.95484 0.96630 0.99541 1.21907 1.01649 0.95778 1.01070 1.21413 0.79738 1.00813 0.97586 1.47746 1.06732 1.26923 1.49187 1.20675 0.92107 0.87986 0.93380 1.21321 1.31196 1.17220 0.88656 0.89868 1.24902 0.95991 0.96808 0.94662 1.69886 1.40812 1.38583 1.02189 0.87050 0.80828 0.83404 0.79988 1.19587 1.20510 1.18293 1.18239 0.87291 0.81006 0.79013 1.90687 1.64501 1.43769 1.45391 1.19875 0.93705 1.02409 0.96052 1.23265 0.94381 0.94091 1.00129 1.21117 0.95002 0.99788 0.98131 1.21561 1.00120 0.98315 0.94463 1.18216 0.90108 0.99225 0.89390 1.84854 1.78342 1.36955 1.30644 1.21412 0.93643 0.97358 0.98829 0.92724 0.92586 0.93007 0.91138 0.92269 0.93539 0.92471 0.89464 0.91147 0.92436 0.95178 0.92024 0.79049 0.85236 0.85723 0.76208 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.11 -1.75 3.08 -90.61 -0.28 -2.03 16 3 C -0.15 -2.19 8.44 37.16 0.31 -1.88 16 4 C 0.13 2.33 4.67 -4.04 -0.02 2.31 16 5 N -0.58 -11.75 2.23 -176.17 -0.39 -12.15 16 6 C 0.18 3.80 3.19 -5.19 -0.02 3.79 16 7 C -0.55 -13.46 7.64 -34.44 -0.26 -13.73 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 10 N -0.88 -24.03 13.96 55.43 0.77 -23.25 16 11 Si 0.86 18.55 27.47 -169.99 -4.67 13.89 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 15 C 0.56 11.74 7.41 -12.32 -0.09 11.65 16 16 O -0.56 -12.81 16.31 5.32 0.09 -12.72 16 17 C -0.12 -2.29 5.49 -104.99 -0.58 -2.87 16 18 C -0.10 -1.96 7.41 -39.17 -0.29 -2.25 16 19 C -0.12 -2.03 10.03 -39.66 -0.40 -2.43 16 20 C -0.13 -1.87 9.98 -39.35 -0.39 -2.27 16 21 C 0.07 1.16 6.70 -39.28 -0.26 0.89 16 22 O -0.50 -6.58 13.50 -19.47 -0.26 -6.84 16 23 C -0.09 -1.62 9.53 -39.02 -0.37 -2.00 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 28 H 0.06 0.96 6.06 -51.93 -0.31 0.65 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.61 7.84 -51.93 -0.41 1.21 16 32 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 33 H 0.06 1.22 3.22 -51.93 -0.17 1.05 16 34 H 0.03 0.63 5.55 -51.93 -0.29 0.34 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.19 4.16 3.46 -52.49 -0.18 3.98 16 37 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.38 3.06 9.06 45.56 0.41 3.48 16 40 H 0.13 2.24 7.90 -52.49 -0.41 1.82 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -29.12 324.45 -6.70 -35.83 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.73 Total: 10.66 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.40 Total: -10.31 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.38 Total: -35.40 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.18 Total: -19.56 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.67 Total: 13.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.12 -6.70 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.202 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds