Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47202 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00183 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46750 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47330 * 119.99625 * 18 16 14 21 21 H 1.48500 * 109.46992 * 239.99851 * 18 16 14 22 22 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 9 8 24 24 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 25 25 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 26 26 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 28 28 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 29 29 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 30 30 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 31 31 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 32 32 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 33 33 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 35 35 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 37 37 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 38 38 H 0.97000 * 119.99888 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.04691 * 180.02562 * 22 9 8 40 40 H 1.07999 * 119.95155 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 6 11.8810 6.4361 0.0009 15 1 11.0776 7.1579 0.0014 16 6 13.1917 6.8635 -0.0001 17 7 14.1700 5.9845 -0.0002 18 14 13.5783 8.6912 -0.0001 19 1 12.3109 9.4651 0.0006 20 1 14.3665 9.0304 1.2117 21 1 14.3645 9.0308 -1.2132 22 6 7.2855 4.4377 0.0010 23 6 5.9208 4.2529 0.0001 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9328 0.9289 0.8909 33 1 5.8216 0.8671 -0.0079 34 1 8.2583 1.1824 0.0033 35 1 9.5258 5.5390 0.0016 36 1 11.9970 4.4999 0.8913 37 1 11.9963 4.5000 -0.8886 38 1 15.0922 6.2853 -0.0006 39 1 7.6959 5.4367 0.0002 40 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -74.124400 kcal Electronic energy + Delta-G solvation = -20009.487965 eV Core-core repulsion = 16788.655348 eV Total energy + Delta-G solvation = -3220.832617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36928 -38.96248 -37.09829 -35.43271 -34.24546 -32.41791 -31.16005 -30.57645 -29.30292 -27.10809 -24.65135 -23.60022 -22.37671 -21.99905 -21.35016 -19.75747 -18.43991 -17.58730 -16.71358 -16.17381 -15.83227 -15.13266 -15.03698 -14.83835 -14.41122 -14.32837 -14.05652 -13.67801 -13.47944 -13.17914 -13.10790 -12.53438 -12.29584 -12.21981 -11.95736 -11.73997 -11.58228 -11.54517 -11.23305 -10.95521 -10.92922 -10.82757 -10.82018 -10.31643 -9.37858 -9.15821 -9.08780 -8.74102 -8.28835 -7.83460 -6.16244 -4.23140 1.06259 1.33944 2.89632 3.24220 3.28058 3.31250 3.34384 4.08175 4.17562 4.37748 4.41594 4.42115 4.59056 4.73543 4.78193 4.79646 4.95370 5.07525 5.20048 5.24614 5.28931 5.31887 5.34552 5.39360 5.48854 5.58616 5.65089 5.74197 5.83397 5.97879 6.19489 6.28962 6.48296 6.62372 7.23892 7.32486 7.42586 7.52384 7.67287 7.97081 8.61865 8.78071 9.08414 9.43414 10.94026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049363 B = 0.002513 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.087622 B =11140.778643 C =11671.513169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.057 3.943 5 O -0.315 6.315 6 C 0.144 3.856 7 C -0.219 4.219 8 C -0.024 4.024 9 C -0.160 4.160 10 C 0.542 3.458 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.248 3.752 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.048 4.048 23 C -0.160 4.160 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.390 0.610 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.480 -8.513 0.000 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.019 4.019 5 O -0.228 6.228 6 C 0.098 3.902 7 C -0.238 4.238 8 C -0.043 4.043 9 C -0.163 4.163 10 C 0.328 3.672 11 O -0.437 6.437 12 N -0.354 5.354 13 C 0.128 3.872 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.067 4.067 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.224 0.776 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.859 -9.046 0.000 26.453 hybrid contribution 0.168 1.120 0.000 1.133 sum -24.691 -7.926 0.000 25.932 Atomic orbital electron populations 1.21748 0.95171 1.01894 1.02113 1.21440 0.96446 0.95601 1.02517 1.21583 0.92505 0.97798 1.03815 1.22882 0.95364 0.81923 1.01692 1.85993 1.19225 1.29320 1.88276 1.19190 0.82027 0.94240 0.94761 1.21175 0.94054 0.98041 1.10528 1.21077 0.93985 0.96998 0.92237 1.20197 0.94198 0.94026 1.07875 1.18147 0.86995 0.84192 0.77870 1.90726 1.60970 1.40287 1.51685 1.46417 1.11126 1.06073 1.71790 1.19155 0.73397 0.96752 0.97922 1.21258 0.92614 0.91116 1.53150 0.91810 1.24955 0.95981 0.98417 0.94692 1.69987 0.99577 1.33722 1.48954 0.86350 0.78477 0.84284 0.77740 1.19613 1.20797 1.20802 1.21222 0.92167 0.98786 0.94508 1.20321 0.95001 0.94774 1.07753 0.92526 0.92534 0.92462 0.91607 0.91608 0.90768 0.90763 0.91845 0.91837 0.85205 0.84424 0.77649 0.95321 0.95326 0.92493 0.84596 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.76 5.58 -26.73 -0.15 -0.91 16 4 C 0.06 0.45 4.73 37.16 0.18 0.63 16 5 O -0.31 -3.50 10.12 -18.81 -0.19 -3.69 16 6 C 0.14 1.78 6.70 -39.02 -0.26 1.52 16 7 C -0.22 -2.69 9.01 -39.49 -0.36 -3.05 16 8 C -0.02 -0.36 9.58 -39.22 -0.38 -0.73 16 9 C -0.16 -2.66 5.87 -104.96 -0.62 -3.28 16 10 C 0.54 11.54 7.76 -12.44 -0.10 11.44 16 11 O -0.56 -13.90 16.34 5.29 0.09 -13.82 16 12 N -0.71 -15.41 5.50 -62.51 -0.34 -15.75 16 13 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 14 C -0.54 -14.84 9.28 -34.44 -0.32 -15.15 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -26.18 13.29 55.43 0.74 -25.44 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.05 -0.67 9.53 -39.22 -0.37 -1.04 16 23 C -0.16 -1.99 9.97 -39.50 -0.39 -2.38 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 7.64 -51.93 -0.40 0.07 16 32 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.13 1.25 6.28 -52.48 -0.33 0.92 16 34 H 0.14 2.05 7.64 -52.49 -0.40 1.65 16 35 H 0.39 7.25 6.34 -40.82 -0.26 6.99 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.14 1.66 6.39 -52.48 -0.34 1.33 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.65 340.07 -8.17 -40.82 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.88 Total: 2.61 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.68 Total: -5.75 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.39 Total: -41.19 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.10 Total: -17.50 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.65 -8.17 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.302 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds