Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47202 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00183 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46750 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47330 * 119.99625 * 18 16 14 21 21 H 1.48500 * 109.46992 * 239.99851 * 18 16 14 22 22 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 9 8 24 24 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 25 25 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 26 26 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 28 28 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 29 29 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 30 30 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 31 31 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 32 32 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 33 33 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 35 35 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 37 37 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 38 38 H 0.97000 * 119.99888 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.04691 * 180.02562 * 22 9 8 40 40 H 1.07999 * 119.95155 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 6 11.8810 6.4361 0.0009 15 1 11.0776 7.1579 0.0014 16 6 13.1917 6.8635 -0.0001 17 7 14.1700 5.9845 -0.0002 18 14 13.5783 8.6912 -0.0001 19 1 12.3109 9.4651 0.0006 20 1 14.3665 9.0304 1.2117 21 1 14.3645 9.0308 -1.2132 22 6 7.2855 4.4377 0.0010 23 6 5.9208 4.2529 0.0001 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9328 0.9289 0.8909 33 1 5.8216 0.8671 -0.0079 34 1 8.2583 1.1824 0.0033 35 1 9.5258 5.5390 0.0016 36 1 11.9970 4.4999 0.8913 37 1 11.9963 4.5000 -0.8886 38 1 15.0922 6.2853 -0.0006 39 1 7.6959 5.4367 0.0002 40 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = -94.856601 kcal Electronic energy + Delta-G solvation = -20010.386981 eV Core-core repulsion = 16788.655348 eV Total energy + Delta-G solvation = -3221.731633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45076 -40.41179 -38.23709 -36.22527 -35.96956 -34.42985 -32.18999 -31.69975 -30.10323 -29.01587 -25.53026 -25.12876 -23.59726 -23.21716 -21.91077 -21.37514 -19.62734 -18.99083 -17.84508 -17.35427 -17.34369 -16.63553 -16.22945 -16.17222 -15.75384 -15.65536 -14.91614 -14.77880 -14.52181 -14.29517 -14.15856 -13.99033 -13.75048 -13.52737 -13.14396 -12.89683 -12.85521 -12.73459 -12.22642 -12.15691 -12.00108 -11.84989 -11.73231 -11.46550 -11.43596 -10.94120 -10.82744 -10.13006 -9.93955 -9.26320 -8.29587 -6.46477 -0.12138 0.29910 1.43738 1.45114 1.58685 1.88494 2.09424 2.30760 2.54358 2.84208 3.05569 3.70579 3.79618 3.85534 3.93538 3.99698 4.13362 4.19750 4.32220 4.35773 4.44350 4.54109 4.64374 4.87650 4.92251 4.96370 4.99991 5.05958 5.14511 5.21781 5.22038 5.27066 5.33503 5.36564 5.44564 5.45386 5.58288 5.68715 5.82836 6.33937 6.63431 6.84906 7.21568 7.40834 8.82977 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049363 B = 0.002513 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.087622 B =11140.778643 C =11671.513169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.115 4.115 4 C 0.046 3.954 5 O -0.318 6.318 6 C 0.154 3.846 7 C -0.212 4.212 8 C -0.031 4.031 9 C -0.188 4.188 10 C 0.540 3.460 11 O -0.604 6.604 12 N -0.701 5.701 13 C 0.265 3.735 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.041 4.041 23 C -0.158 4.158 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.407 0.593 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.269 0.731 39 H 0.150 0.850 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.414 -7.166 -0.003 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.028 4.028 5 O -0.231 6.231 6 C 0.107 3.893 7 C -0.230 4.230 8 C -0.050 4.050 9 C -0.191 4.191 10 C 0.330 3.670 11 O -0.488 6.488 12 N -0.350 5.350 13 C 0.142 3.858 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.060 4.060 23 C -0.177 4.177 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.244 0.756 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.861 -7.692 -0.003 28.904 hybrid contribution 0.909 0.572 0.001 1.074 sum -26.952 -7.120 -0.002 27.876 Atomic orbital electron populations 1.21759 0.94902 1.02262 1.02120 1.21436 0.96656 0.94751 1.02953 1.21573 0.91364 0.98634 1.03671 1.23196 0.96325 0.80577 1.02699 1.86015 1.18137 1.31382 1.87599 1.19351 0.82779 0.94240 0.92889 1.21361 0.92655 0.99664 1.09360 1.21096 0.95218 0.96038 0.92642 1.19839 0.91098 0.95989 1.12203 1.18899 0.89081 0.83046 0.76005 1.90685 1.62792 1.41600 1.53730 1.46122 1.09250 1.07380 1.72297 1.18618 0.76158 0.96691 0.94336 1.21636 0.93583 0.91203 1.52974 0.89660 1.26090 0.95699 1.04085 0.93790 1.70148 1.00224 1.36618 1.49913 0.85073 0.78867 0.77369 0.77674 1.17524 1.20432 1.20438 1.21319 0.92585 0.98433 0.93642 1.20578 0.94496 0.95877 1.06699 0.92540 0.92548 0.91950 0.91184 0.91187 0.90937 0.90930 0.90812 0.90809 0.82357 0.85372 0.75579 0.99202 0.99208 0.92212 0.83209 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -0.93 5.93 30.59 0.18 -0.75 16 3 C -0.11 -1.17 5.58 30.59 0.17 -1.00 16 4 C 0.05 0.59 4.73 71.98 0.34 0.93 16 5 O -0.32 -6.01 10.12 -90.23 -0.91 -6.93 16 6 C 0.15 3.36 6.70 22.63 0.15 3.51 16 7 C -0.21 -4.72 9.01 22.33 0.20 -4.52 16 8 C -0.03 -0.91 9.58 22.51 0.22 -0.69 16 9 C -0.19 -6.28 5.87 -20.08 -0.12 -6.40 16 10 C 0.54 23.98 7.76 86.71 0.67 24.65 16 11 O -0.60 -32.12 16.34 -3.99 -0.07 -32.19 16 12 N -0.70 -31.57 5.50 -469.95 -2.58 -34.16 16 13 C 0.26 14.99 5.43 85.63 0.46 15.46 16 14 C -0.56 -30.73 9.28 25.60 0.24 -30.49 16 15 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.16 5.46 84.65 0.46 0.63 16 17 N -0.93 -56.68 13.29 21.44 0.28 -56.40 16 18 Si 0.99 42.60 29.54 68.60 2.03 44.63 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 C -0.04 -1.07 9.53 22.51 0.21 -0.86 16 23 C -0.16 -3.46 9.97 22.33 0.22 -3.24 16 24 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.82 7.64 -2.38 -0.02 0.81 16 32 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 33 H 0.16 2.54 6.28 -2.91 -0.02 2.53 16 34 H 0.13 3.95 7.64 -2.91 -0.02 3.92 16 35 H 0.41 15.10 6.34 -92.71 -0.59 14.51 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.50 340.07 3.33 -70.17 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.45 Total: 18.03 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 4.13 Total: -3.16 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.30 Total: -90.56 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.98 Total: -39.11 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.50 3.33 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.686 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds