Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47414 * 2 1 4 4 H 1.08999 * 109.46901 * 54.92531 * 3 2 1 5 5 C 1.50693 * 109.47224 * 174.92520 * 3 2 1 6 6 H 1.07997 * 120.00692 * 120.00156 * 5 3 2 7 7 C 1.37882 * 120.00041 * 300.00366 * 5 3 2 8 8 N 1.31518 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00231 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47602 * 89.99257 * 9 7 5 11 11 H 1.48507 * 109.47305 * 209.99713 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99732 * 9 7 5 13 13 N 1.46899 * 109.46884 * 294.92529 * 3 2 1 14 14 C 1.46904 * 110.99619 * 154.13060 * 13 3 2 15 15 C 1.50703 * 109.47020 * 185.61937 * 14 13 3 16 16 C 1.38247 * 119.94407 * 269.73134 * 15 14 13 17 17 C 1.38194 * 120.11452 * 179.77794 * 16 15 14 18 18 C 1.38707 * 120.06681 * 0.55567 * 17 16 15 19 19 C 1.38973 * 119.81674 * 359.62682 * 18 17 16 20 20 C 1.38194 * 119.94221 * 89.99540 * 15 14 13 21 21 O 1.36103 * 120.78543 * 180.26084 * 19 18 17 22 22 C 1.43177 * 116.71354 * 342.81961 * 21 19 18 23 23 C 1.53462 * 108.25260 * 46.15856 * 22 21 19 24 24 O 1.36105 * 119.39695 * 179.53822 * 18 17 16 25 25 H 1.08994 * 109.47414 * 180.49861 * 1 2 3 26 26 H 1.09002 * 109.47109 * 300.49913 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.49489 * 1 2 3 28 28 H 1.09002 * 109.46832 * 240.00120 * 2 1 3 29 29 H 1.08999 * 109.47097 * 120.00154 * 2 1 3 30 30 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00090 * 278.08425 * 13 3 2 32 32 H 1.08999 * 109.47178 * 305.62158 * 14 13 3 33 33 H 1.08998 * 109.47079 * 65.62200 * 14 13 3 34 34 H 1.08004 * 119.94698 * 0.02562 * 16 15 14 35 35 H 1.07997 * 119.97048 * 180.29098 * 17 16 15 36 36 H 1.08004 * 119.96628 * 359.95392 * 20 15 14 37 37 H 1.09004 * 109.70563 * 165.85225 * 22 21 19 38 38 H 1.09000 * 109.70711 * 286.46735 * 22 21 19 39 39 H 1.09007 * 109.71038 * 59.94634 * 23 22 21 40 40 H 1.09000 * 109.71331 * 180.57498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5418 1.4443 0.1257 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2308 8 7 3.4034 0.3383 2.1755 9 14 6.0032 0.8816 1.3870 10 1 6.4392 2.1149 2.0900 11 1 6.4368 -0.3091 2.1612 12 1 6.6135 0.8415 0.0337 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1772 -2.3462 16 6 1.9003 4.5929 -3.3309 17 6 1.4174 5.1607 -4.4946 18 6 0.0518 5.3256 -4.6728 19 6 -0.8295 4.9111 -3.6813 20 6 -0.3384 4.3372 -2.5179 21 8 -2.1734 5.0586 -3.8377 22 6 -2.6070 5.9732 -4.8504 23 6 -1.7942 5.7015 -6.1234 24 8 -0.4084 5.8950 -5.8202 25 1 -0.3634 -1.0275 0.0089 26 1 -0.3633 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8255 -0.0592 2.9530 31 1 2.2959 1.8667 -1.9982 32 1 0.8775 3.7753 -0.2554 33 1 2.5408 3.9614 -0.8612 34 1 2.9643 4.4701 -3.1923 35 1 2.1042 5.4804 -5.2643 36 1 -1.0211 4.0148 -1.7456 37 1 -3.6675 5.8225 -5.0521 38 1 -2.4375 6.9973 -4.5177 39 1 -1.9586 4.6753 -6.4525 40 1 -2.0988 6.3932 -6.9088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = -56.055727 kcal Electronic energy + Delta-G solvation = -21292.397686 eV Core-core repulsion = 18072.348585 eV Total energy + Delta-G solvation = -3220.049100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17900 -38.07110 -37.22556 -35.92696 -32.86624 -31.50629 -30.85496 -30.17931 -28.54333 -26.46976 -24.99561 -23.68950 -22.56366 -22.12517 -20.26473 -19.46804 -18.52734 -17.22534 -17.03373 -16.64758 -15.43772 -15.11593 -14.83132 -14.55084 -14.40150 -14.16677 -13.90917 -13.70637 -13.33054 -13.00730 -12.64475 -12.42473 -12.04676 -11.56326 -11.46662 -11.23877 -11.16357 -11.04634 -10.82204 -10.79596 -10.64489 -10.41896 -10.11695 -9.57689 -9.49432 -9.06198 -8.43090 -8.37504 -7.89378 -7.23816 -5.99448 -4.12619 1.46334 1.49145 3.00965 3.19630 3.26977 3.34537 3.37087 3.87072 4.12089 4.39663 4.63063 4.69364 4.72527 5.04573 5.15082 5.25848 5.26968 5.38345 5.54368 5.60467 5.72635 5.89040 6.22552 6.29023 6.35094 6.43404 6.46363 6.55291 6.74747 6.79767 6.87640 6.98235 7.15839 7.21077 7.44980 7.48343 7.60153 7.78369 8.09782 8.14555 8.33008 8.65844 9.00122 9.55080 11.00620 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.003835 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.459932 B = 7299.762115 C = 8004.763542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.104 3.896 15 C -0.056 4.056 16 C -0.110 4.110 17 C -0.114 4.114 18 C 0.035 3.965 19 C 0.046 3.954 20 C -0.094 4.094 21 O -0.308 6.308 22 C 0.021 3.979 23 C 0.021 3.979 24 O -0.312 6.312 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 10.424 -13.358 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.026 4.026 15 C -0.057 4.057 16 C -0.129 4.129 17 C -0.133 4.133 18 C -0.009 4.009 19 C 0.001 3.999 20 C -0.113 4.113 21 O -0.223 6.223 22 C -0.055 4.055 23 C -0.055 4.055 24 O -0.227 6.227 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.279 10.228 -13.088 19.534 hybrid contribution 1.811 0.275 0.037 1.832 sum -8.468 10.503 -13.051 18.771 Atomic orbital electron populations 1.21704 0.99007 0.98353 1.00436 1.21490 0.92109 0.99155 1.01640 1.19176 0.92857 0.91294 0.85996 0.94924 1.21869 0.92745 1.38338 1.05580 0.92812 1.24932 0.97910 0.94950 0.95712 1.69880 1.34819 1.38211 1.09360 0.86657 0.86060 0.77529 0.78098 1.20765 1.21180 1.19992 1.60931 1.55141 1.04904 1.10216 1.20738 0.99142 0.90400 0.92287 1.19907 0.91977 0.96795 0.97035 1.20902 1.00146 0.99073 0.92743 1.20348 0.91698 1.02165 0.99078 1.18822 0.93502 1.02346 0.86237 1.18882 0.82261 1.03662 0.95074 1.20336 0.95338 1.00633 0.95005 1.86318 1.19349 1.61282 1.55346 1.23563 1.00322 0.93707 0.87871 1.23566 0.80580 1.03503 0.97812 1.86274 1.25985 1.71843 1.38569 0.95703 0.94504 0.93259 0.95111 0.89167 0.92877 0.85471 0.91072 0.94129 0.85152 0.85247 0.84794 0.86420 0.90783 0.90671 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.21 5.22 1.97 -68.87 -0.14 5.08 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.55 -14.46 8.47 -34.44 -0.29 -14.75 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.11 5.67 -109.22 -0.62 -14.73 16 14 C 0.10 1.91 5.64 -4.97 -0.03 1.88 16 15 C -0.06 -0.91 5.44 -104.63 -0.57 -1.48 16 16 C -0.11 -1.62 9.69 -39.59 -0.38 -2.00 16 17 C -0.11 -1.59 9.96 -39.42 -0.39 -1.99 16 18 C 0.04 0.51 6.49 -39.14 -0.25 0.26 16 19 C 0.05 0.69 6.49 -39.14 -0.25 0.44 16 20 C -0.09 -1.49 9.61 -39.42 -0.38 -1.87 16 21 O -0.31 -4.20 10.42 -32.85 -0.34 -4.55 16 22 C 0.02 0.19 7.26 37.40 0.27 0.46 16 23 C 0.02 0.19 7.26 37.40 0.27 0.46 16 24 O -0.31 -4.01 10.42 -32.85 -0.34 -4.35 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.99 7.77 -51.93 -0.40 0.59 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 6.79 8.45 -39.29 -0.33 6.46 16 32 H 0.07 1.32 7.86 -51.93 -0.41 0.92 16 33 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -29.30 330.48 -8.78 -38.08 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.04 Total: 5.75 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.02 Total: -16.94 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.01 Total: -38.87 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.68 Total: -8.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.30 -8.78 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.973 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds