Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47414 * 2 1 4 4 H 1.08999 * 109.46901 * 54.92531 * 3 2 1 5 5 C 1.50693 * 109.47224 * 174.92520 * 3 2 1 6 6 H 1.07997 * 120.00692 * 120.00156 * 5 3 2 7 7 C 1.37882 * 120.00041 * 300.00366 * 5 3 2 8 8 N 1.31518 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00231 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47602 * 89.99257 * 9 7 5 11 11 H 1.48507 * 109.47305 * 209.99713 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99732 * 9 7 5 13 13 N 1.46899 * 109.46884 * 294.92529 * 3 2 1 14 14 C 1.46904 * 110.99619 * 154.13060 * 13 3 2 15 15 C 1.50703 * 109.47020 * 185.61937 * 14 13 3 16 16 C 1.38247 * 119.94407 * 269.73134 * 15 14 13 17 17 C 1.38194 * 120.11452 * 179.77794 * 16 15 14 18 18 C 1.38707 * 120.06681 * 0.55567 * 17 16 15 19 19 C 1.38973 * 119.81674 * 359.62682 * 18 17 16 20 20 C 1.38194 * 119.94221 * 89.99540 * 15 14 13 21 21 O 1.36103 * 120.78543 * 180.26084 * 19 18 17 22 22 C 1.43177 * 116.71354 * 342.81961 * 21 19 18 23 23 C 1.53462 * 108.25260 * 46.15856 * 22 21 19 24 24 O 1.36105 * 119.39695 * 179.53822 * 18 17 16 25 25 H 1.08994 * 109.47414 * 180.49861 * 1 2 3 26 26 H 1.09002 * 109.47109 * 300.49913 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.49489 * 1 2 3 28 28 H 1.09002 * 109.46832 * 240.00120 * 2 1 3 29 29 H 1.08999 * 109.47097 * 120.00154 * 2 1 3 30 30 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00090 * 278.08425 * 13 3 2 32 32 H 1.08999 * 109.47178 * 305.62158 * 14 13 3 33 33 H 1.08998 * 109.47079 * 65.62200 * 14 13 3 34 34 H 1.08004 * 119.94698 * 0.02562 * 16 15 14 35 35 H 1.07997 * 119.97048 * 180.29098 * 17 16 15 36 36 H 1.08004 * 119.96628 * 359.95392 * 20 15 14 37 37 H 1.09004 * 109.70563 * 165.85225 * 22 21 19 38 38 H 1.09000 * 109.70711 * 286.46735 * 22 21 19 39 39 H 1.09007 * 109.71038 * 59.94634 * 23 22 21 40 40 H 1.09000 * 109.71331 * 180.57498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5418 1.4443 0.1257 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2308 8 7 3.4034 0.3383 2.1755 9 14 6.0032 0.8816 1.3870 10 1 6.4392 2.1149 2.0900 11 1 6.4368 -0.3091 2.1612 12 1 6.6135 0.8415 0.0337 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1772 -2.3462 16 6 1.9003 4.5929 -3.3309 17 6 1.4174 5.1607 -4.4946 18 6 0.0518 5.3256 -4.6728 19 6 -0.8295 4.9111 -3.6813 20 6 -0.3384 4.3372 -2.5179 21 8 -2.1734 5.0586 -3.8377 22 6 -2.6070 5.9732 -4.8504 23 6 -1.7942 5.7015 -6.1234 24 8 -0.4084 5.8950 -5.8202 25 1 -0.3634 -1.0275 0.0089 26 1 -0.3633 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8255 -0.0592 2.9530 31 1 2.2959 1.8667 -1.9982 32 1 0.8775 3.7753 -0.2554 33 1 2.5408 3.9614 -0.8612 34 1 2.9643 4.4701 -3.1923 35 1 2.1042 5.4804 -5.2643 36 1 -1.0211 4.0148 -1.7456 37 1 -3.6675 5.8225 -5.0521 38 1 -2.4375 6.9973 -4.5177 39 1 -1.9586 4.6753 -6.4525 40 1 -2.0988 6.3932 -6.9088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = -73.717868 kcal Electronic energy + Delta-G solvation = -21293.163574 eV Core-core repulsion = 18072.348585 eV Total energy + Delta-G solvation = -3220.814988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.16419 -39.28006 -38.19203 -37.64274 -34.57470 -33.24948 -31.88603 -31.48823 -29.71810 -28.20734 -26.25916 -25.04102 -24.12509 -23.39673 -21.45259 -21.23375 -19.53215 -18.71070 -18.14880 -18.03544 -16.80519 -16.39821 -16.22688 -15.83027 -15.59057 -15.34324 -15.25244 -14.88892 -14.78220 -14.50494 -14.05602 -13.78815 -13.51038 -13.16299 -13.09443 -12.85002 -12.70205 -12.55715 -12.37152 -12.04102 -11.94775 -11.91213 -11.49778 -11.46679 -11.27768 -10.99788 -10.44060 -9.56411 -9.12019 -8.90913 -8.03154 -6.25313 0.30442 0.35519 1.40434 1.42440 1.51345 2.09529 2.32186 2.42420 2.70514 3.17068 3.34232 3.71342 3.78320 3.97563 4.07644 4.14963 4.21164 4.37483 4.44582 4.53551 4.61397 4.62645 4.70947 4.78271 4.88361 4.95376 5.03167 5.17942 5.19228 5.20732 5.43683 5.53486 5.64035 5.64370 5.72555 5.79502 5.95278 6.11923 6.21863 6.39512 6.46044 6.81988 7.03302 7.46189 8.93582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.003835 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.459932 B = 7299.762115 C = 8004.763542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.559 4.559 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.675 5.675 14 C 0.111 3.889 15 C -0.068 4.068 16 C -0.111 4.111 17 C -0.114 4.114 18 C 0.036 3.964 19 C 0.041 3.959 20 C -0.107 4.107 21 O -0.326 6.326 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.321 6.321 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 11.344 -15.431 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.598 4.598 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.018 4.018 15 C -0.069 4.069 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.010 4.010 19 C -0.004 4.004 20 C -0.126 4.126 21 O -0.242 6.242 22 C -0.061 4.061 23 C -0.060 4.060 24 O -0.236 6.236 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.626 11.164 -15.186 21.637 hybrid contribution 1.790 0.069 0.584 1.884 sum -8.836 11.232 -14.602 20.432 Atomic orbital electron populations 1.21562 0.96597 0.99665 1.00457 1.21357 0.94249 0.98415 1.00025 1.18955 0.91784 0.91527 0.86480 0.98051 1.22182 0.93955 1.38082 1.05613 0.92858 1.25668 1.02083 0.94751 0.95520 1.70011 1.36416 1.38859 1.09762 0.85673 0.81043 0.77435 0.78155 1.20431 1.21008 1.19360 1.60846 1.54634 1.06347 1.08536 1.20623 0.98546 0.88999 0.93615 1.19633 0.92477 0.98258 0.96555 1.21000 1.00419 0.98893 0.92666 1.20589 0.92099 1.01439 0.99096 1.18971 0.93692 1.01618 0.86674 1.18898 0.83253 1.03431 0.94853 1.20322 0.95176 1.01451 0.95649 1.86286 1.18401 1.62431 1.57032 1.23969 1.02195 0.93177 0.86803 1.23945 0.78504 1.04873 0.98663 1.86262 1.28338 1.71454 1.37555 0.93716 0.95044 0.92584 0.95347 0.91990 0.92925 0.85273 0.91974 0.95059 0.84215 0.83026 0.85429 0.82968 0.90206 0.90523 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.80 71.98 0.71 -4.49 16 2 C -0.10 -4.94 5.45 30.60 0.17 -4.78 16 3 C 0.22 11.03 1.97 44.17 0.09 11.12 16 4 H 0.00 0.08 7.70 -2.39 -0.02 0.07 16 5 C -0.56 -30.02 8.47 25.60 0.22 -29.80 16 6 H 0.05 2.80 7.73 -2.91 -0.02 2.78 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.02 11.29 21.45 0.24 -51.78 16 9 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.67 -28.32 5.67 -499.45 -2.83 -31.15 16 14 C 0.11 4.21 5.64 85.56 0.48 4.69 16 15 C -0.07 -2.22 5.44 -19.87 -0.11 -2.33 16 16 C -0.11 -3.18 9.69 22.26 0.22 -2.96 16 17 C -0.11 -2.98 9.96 22.37 0.22 -2.76 16 18 C 0.04 0.97 6.49 22.56 0.15 1.12 16 19 C 0.04 1.19 6.49 22.56 0.15 1.34 16 20 C -0.11 -3.41 9.61 22.37 0.22 -3.19 16 21 O -0.33 -8.45 10.42 -82.51 -0.86 -9.31 16 22 C 0.01 0.20 7.26 72.14 0.52 0.72 16 23 C 0.01 0.22 7.26 72.14 0.52 0.74 16 24 O -0.32 -7.43 10.42 -82.52 -0.86 -8.29 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 2.22 7.77 -2.39 -0.02 2.21 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 3.38 5.95 -2.39 -0.01 3.37 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.33 13.72 8.45 -89.70 -0.76 12.97 16 32 H 0.06 2.42 7.86 -2.39 -0.02 2.40 16 33 H 0.03 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 35 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.15 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.16 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -63.28 330.48 1.98 -61.30 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.27 Total: 23.17 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.99 Total: -29.06 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.59 Total: -82.94 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.72 Total: -17.60 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.28 1.98 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -63.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds