Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46990 * 175.22063 * 3 2 1 5 5 C 1.50704 * 109.47137 * 55.22651 * 3 2 1 6 6 H 1.07994 * 119.99825 * 245.72407 * 5 3 2 7 7 C 1.37876 * 120.00200 * 65.72099 * 5 3 2 8 8 N 1.31513 * 119.99897 * 5.51787 * 7 5 3 9 9 Si 1.86798 * 120.00165 * 185.51931 * 7 5 3 10 10 H 1.48500 * 109.47316 * 270.00103 * 9 7 5 11 11 H 1.48498 * 109.47057 * 30.00101 * 9 7 5 12 12 H 1.48501 * 109.47121 * 149.99803 * 9 7 5 13 13 N 1.46896 * 109.47494 * 295.22257 * 3 2 1 14 14 C 1.46896 * 111.00229 * 279.79967 * 13 3 2 15 15 C 1.50702 * 109.46938 * 184.98112 * 14 13 3 16 16 C 1.38247 * 119.94126 * 269.71900 * 15 14 13 17 17 C 1.38202 * 120.11223 * 179.77848 * 16 15 14 18 18 C 1.38698 * 120.06403 * 0.56708 * 17 16 15 19 19 C 1.38973 * 119.82423 * 359.62414 * 18 17 16 20 20 C 1.38195 * 119.94498 * 89.99956 * 15 14 13 21 21 O 1.36101 * 120.78793 * 180.26616 * 19 18 17 22 22 C 1.43179 * 116.71592 * 342.81138 * 21 19 18 23 23 C 1.53470 * 108.24657 * 46.16613 * 22 21 19 24 24 O 1.36105 * 119.39549 * 179.53412 * 18 17 16 25 25 H 1.08999 * 109.47098 * 184.94848 * 1 2 3 26 26 H 1.08999 * 109.46622 * 304.94605 * 1 2 3 27 27 H 1.08996 * 109.47031 * 64.94371 * 1 2 3 28 28 H 1.09000 * 109.46703 * 240.00057 * 2 1 3 29 29 H 1.08999 * 109.46747 * 120.00382 * 2 1 3 30 30 H 0.97002 * 120.00155 * 355.15166 * 8 7 5 31 31 H 1.00900 * 111.00246 * 155.83477 * 13 3 2 32 32 H 1.09003 * 109.46721 * 304.97686 * 14 13 3 33 33 H 1.09002 * 109.47443 * 64.97614 * 14 13 3 34 34 H 1.08002 * 119.94809 * 0.03743 * 16 15 14 35 35 H 1.08002 * 119.96890 * 180.29315 * 17 16 15 36 36 H 1.08001 * 119.96706 * 359.94655 * 20 15 14 37 37 H 1.09000 * 109.70746 * 165.85385 * 22 21 19 38 38 H 1.09001 * 109.70673 * 286.47689 * 22 21 19 39 39 H 1.08992 * 109.71498 * 59.94641 * 23 22 21 40 40 H 1.09002 * 109.70821 * 180.57677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1267 1.4435 0.0856 5 6 1.4435 2.1862 1.1671 6 1 0.7593 3.0035 0.9937 7 6 1.7712 1.8231 2.4562 8 7 2.6853 0.9016 2.6675 9 14 0.9167 2.6400 3.9025 10 1 1.6809 3.8455 4.3125 11 1 -0.4581 3.0369 3.5054 12 1 0.8479 1.6871 5.0394 13 7 1.6469 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1952 2.5188 -3.5830 16 6 1.2804 2.0076 -4.4847 17 6 0.9454 2.7274 -5.6159 18 6 1.5352 3.9597 -5.8554 19 6 2.4577 4.4719 -4.9510 20 6 2.7855 3.7466 -3.8149 21 8 3.0443 5.6814 -5.1638 22 6 2.9711 6.2072 -6.4935 23 6 1.5297 6.0465 -6.9951 24 8 1.2023 4.6527 -6.9785 25 1 -0.3633 -1.0238 0.0886 26 1 -0.3632 0.5887 0.8424 27 1 -0.3633 0.4352 -0.9309 28 1 1.8932 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.0785 0.4275 1.9181 31 1 1.6064 3.1025 -1.1378 32 1 3.5810 1.9574 -2.0603 33 1 2.4595 0.6670 -2.5557 34 1 0.8236 1.0460 -4.3027 35 1 0.2269 2.3280 -6.3164 36 1 3.5026 4.1421 -3.1108 37 1 3.2424 7.2629 -6.4867 38 1 3.6504 5.6567 -7.1443 39 1 0.8497 6.5916 -6.3406 40 1 1.4493 6.4309 -8.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -56.116148 kcal Electronic energy + Delta-G solvation = -21351.633494 eV Core-core repulsion = 18131.581773 eV Total energy + Delta-G solvation = -3220.051720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26458 -38.21819 -37.30354 -36.29383 -33.16830 -31.31621 -30.88292 -30.10780 -28.65193 -26.17706 -24.81427 -23.63864 -23.38388 -22.32954 -20.45100 -19.24043 -18.61442 -17.39242 -17.27503 -16.76430 -15.50429 -15.17014 -14.65166 -14.52516 -14.46738 -14.19606 -13.83342 -13.78355 -13.70060 -13.28320 -12.92881 -12.34287 -12.11753 -11.83371 -11.68569 -11.27412 -11.20791 -11.03429 -10.89807 -10.74940 -10.51444 -10.13643 -10.06924 -9.87407 -9.70281 -8.60120 -8.48924 -8.28716 -7.96810 -7.35670 -6.32526 -4.04411 1.35050 1.39318 2.93001 3.12124 3.44078 3.48564 3.63822 3.76381 4.05473 4.53018 4.57194 4.60435 4.67124 4.97928 5.04838 5.21215 5.27090 5.38337 5.40049 5.45131 5.56641 5.76283 6.06074 6.12931 6.18214 6.24017 6.34327 6.43251 6.62604 6.69951 6.78716 6.85603 6.96962 7.07579 7.27586 7.39127 7.45690 7.59148 7.88834 8.12236 8.52514 8.60173 8.89746 9.66316 11.04146 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.003791 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.360682 B = 7385.067489 C = 7889.031398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.202 3.798 4 H -0.008 1.008 5 C -0.590 4.590 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 1.069 2.931 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.672 5.672 14 C 0.097 3.903 15 C -0.062 4.062 16 C -0.094 4.094 17 C -0.114 4.114 18 C 0.039 3.961 19 C 0.048 3.952 20 C -0.108 4.108 21 O -0.308 6.308 22 C 0.021 3.979 23 C 0.021 3.979 24 O -0.311 6.311 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.271 0.729 31 H 0.335 0.665 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 7.363 -18.905 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.009 0.991 5 C -0.628 4.628 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.303 5.303 14 C -0.032 4.032 15 C -0.063 4.063 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.006 4.006 19 C 0.003 3.997 20 C -0.128 4.128 21 O -0.223 6.223 22 C -0.055 4.055 23 C -0.055 4.055 24 O -0.226 6.226 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.259 6.993 -17.423 18.816 hybrid contribution 0.872 0.680 -1.629 1.969 sum -0.387 7.673 -19.052 20.543 Atomic orbital electron populations 1.21452 0.96402 0.97821 1.02076 1.21520 0.96474 0.98253 0.98336 1.19305 0.93179 0.91721 0.86353 0.99069 1.21936 1.30553 1.18655 0.91679 0.92757 1.25696 0.95543 0.96921 1.00060 1.70765 1.24307 1.24166 1.35785 0.83551 0.75611 0.75674 0.75443 1.21642 1.21382 1.21075 1.60675 1.50212 1.13555 1.05859 1.20915 0.94700 0.98530 0.89097 1.19786 0.96123 0.93894 0.96456 1.20844 0.97313 1.00365 0.92746 1.20405 1.00959 0.93156 0.98792 1.18838 0.97826 0.94846 0.89067 1.18811 0.95870 0.87600 0.97380 1.20365 1.02086 0.93832 0.96479 1.86319 1.74160 1.32108 1.29715 1.23582 0.97088 1.01361 0.83437 1.23583 0.96231 0.81409 1.04261 1.86282 1.79090 1.21514 1.35681 0.96444 0.91821 0.93559 0.96089 0.92412 0.91686 0.84721 0.95237 0.90717 0.84862 0.85051 0.85037 0.86323 0.90725 0.90584 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.53 37.16 0.35 -2.29 16 2 C -0.11 -2.49 5.47 -26.74 -0.15 -2.64 16 3 C 0.20 4.95 1.92 -68.87 -0.13 4.81 16 4 H -0.01 -0.22 7.31 -51.93 -0.38 -0.60 16 5 C -0.59 -15.94 6.92 -34.44 -0.24 -16.18 16 6 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 7 C 0.02 0.62 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.90 13.20 55.43 0.73 -26.16 16 9 Si 1.07 24.99 29.91 -169.99 -5.08 19.90 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -14.03 5.85 -109.22 -0.64 -14.67 16 14 C 0.10 1.71 5.63 -4.98 -0.03 1.68 16 15 C -0.06 -0.97 5.34 -104.63 -0.56 -1.53 16 16 C -0.09 -1.35 9.69 -39.59 -0.38 -1.73 16 17 C -0.11 -1.55 9.96 -39.42 -0.39 -1.94 16 18 C 0.04 0.55 6.49 -39.14 -0.25 0.30 16 19 C 0.05 0.71 6.49 -39.14 -0.25 0.46 16 20 C -0.11 -1.68 9.61 -39.42 -0.38 -2.06 16 21 O -0.31 -4.15 10.42 -32.85 -0.34 -4.49 16 22 C 0.02 0.19 7.26 37.40 0.27 0.46 16 23 C 0.02 0.18 7.26 37.40 0.27 0.45 16 24 O -0.31 -3.89 10.42 -32.86 -0.34 -4.24 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 1.53 6.89 -51.93 -0.36 1.17 16 27 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 28 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 29 H 0.06 1.46 6.18 -51.93 -0.32 1.14 16 30 H 0.27 7.94 5.62 -40.82 -0.23 7.71 16 31 H 0.34 7.14 8.30 -39.29 -0.33 6.81 16 32 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 33 H 0.07 1.29 7.14 -51.93 -0.37 0.92 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -30.70 324.98 -8.50 -39.20 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.76 Total: 5.25 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.96 Total: -19.69 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.09 Total: -40.83 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.68 Total: -8.73 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.70 -8.50 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.919 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds