Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46990 * 175.22063 * 3 2 1 5 5 C 1.50704 * 109.47137 * 55.22651 * 3 2 1 6 6 H 1.07994 * 119.99825 * 245.72407 * 5 3 2 7 7 C 1.37876 * 120.00200 * 65.72099 * 5 3 2 8 8 N 1.31513 * 119.99897 * 5.51787 * 7 5 3 9 9 Si 1.86798 * 120.00165 * 185.51931 * 7 5 3 10 10 H 1.48500 * 109.47316 * 270.00103 * 9 7 5 11 11 H 1.48498 * 109.47057 * 30.00101 * 9 7 5 12 12 H 1.48501 * 109.47121 * 149.99803 * 9 7 5 13 13 N 1.46896 * 109.47494 * 295.22257 * 3 2 1 14 14 C 1.46896 * 111.00229 * 279.79967 * 13 3 2 15 15 C 1.50702 * 109.46938 * 184.98112 * 14 13 3 16 16 C 1.38247 * 119.94126 * 269.71900 * 15 14 13 17 17 C 1.38202 * 120.11223 * 179.77848 * 16 15 14 18 18 C 1.38698 * 120.06403 * 0.56708 * 17 16 15 19 19 C 1.38973 * 119.82423 * 359.62414 * 18 17 16 20 20 C 1.38195 * 119.94498 * 89.99956 * 15 14 13 21 21 O 1.36101 * 120.78793 * 180.26616 * 19 18 17 22 22 C 1.43179 * 116.71592 * 342.81138 * 21 19 18 23 23 C 1.53470 * 108.24657 * 46.16613 * 22 21 19 24 24 O 1.36105 * 119.39549 * 179.53412 * 18 17 16 25 25 H 1.08999 * 109.47098 * 184.94848 * 1 2 3 26 26 H 1.08999 * 109.46622 * 304.94605 * 1 2 3 27 27 H 1.08996 * 109.47031 * 64.94371 * 1 2 3 28 28 H 1.09000 * 109.46703 * 240.00057 * 2 1 3 29 29 H 1.08999 * 109.46747 * 120.00382 * 2 1 3 30 30 H 0.97002 * 120.00155 * 355.15166 * 8 7 5 31 31 H 1.00900 * 111.00246 * 155.83477 * 13 3 2 32 32 H 1.09003 * 109.46721 * 304.97686 * 14 13 3 33 33 H 1.09002 * 109.47443 * 64.97614 * 14 13 3 34 34 H 1.08002 * 119.94809 * 0.03743 * 16 15 14 35 35 H 1.08002 * 119.96890 * 180.29315 * 17 16 15 36 36 H 1.08001 * 119.96706 * 359.94655 * 20 15 14 37 37 H 1.09000 * 109.70746 * 165.85385 * 22 21 19 38 38 H 1.09001 * 109.70673 * 286.47689 * 22 21 19 39 39 H 1.08992 * 109.71498 * 59.94641 * 23 22 21 40 40 H 1.09002 * 109.70821 * 180.57677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1267 1.4435 0.0856 5 6 1.4435 2.1862 1.1671 6 1 0.7593 3.0035 0.9937 7 6 1.7712 1.8231 2.4562 8 7 2.6853 0.9016 2.6675 9 14 0.9167 2.6400 3.9025 10 1 1.6809 3.8455 4.3125 11 1 -0.4581 3.0369 3.5054 12 1 0.8479 1.6871 5.0394 13 7 1.6469 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1952 2.5188 -3.5830 16 6 1.2804 2.0076 -4.4847 17 6 0.9454 2.7274 -5.6159 18 6 1.5352 3.9597 -5.8554 19 6 2.4577 4.4719 -4.9510 20 6 2.7855 3.7466 -3.8149 21 8 3.0443 5.6814 -5.1638 22 6 2.9711 6.2072 -6.4935 23 6 1.5297 6.0465 -6.9951 24 8 1.2023 4.6527 -6.9785 25 1 -0.3633 -1.0238 0.0886 26 1 -0.3632 0.5887 0.8424 27 1 -0.3633 0.4352 -0.9309 28 1 1.8932 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.0785 0.4275 1.9181 31 1 1.6064 3.1025 -1.1378 32 1 3.5810 1.9574 -2.0603 33 1 2.4595 0.6670 -2.5557 34 1 0.8236 1.0460 -4.3027 35 1 0.2269 2.3280 -6.3164 36 1 3.5026 4.1421 -3.1108 37 1 3.2424 7.2629 -6.4867 38 1 3.6504 5.6567 -7.1443 39 1 0.8497 6.5916 -6.3406 40 1 1.4493 6.4309 -8.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -75.325194 kcal Electronic energy + Delta-G solvation = -21352.466461 eV Core-core repulsion = 18131.581773 eV Total energy + Delta-G solvation = -3220.884687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.22747 -39.43500 -38.25113 -37.99968 -34.85934 -32.95586 -31.96764 -31.46015 -29.78312 -27.82999 -26.11824 -25.37639 -24.80734 -23.46085 -21.53987 -21.08451 -19.61781 -19.00895 -18.23764 -18.10404 -16.50421 -16.26723 -16.16163 -15.94270 -15.73682 -15.51130 -15.39671 -15.03810 -14.89475 -14.84526 -14.04545 -13.90765 -13.72864 -13.40949 -13.11813 -12.74897 -12.60655 -12.56864 -12.02615 -12.00362 -11.93095 -11.92794 -11.73235 -11.57228 -11.42737 -10.58585 -10.36970 -9.66578 -9.17811 -9.00386 -8.53318 -6.25681 0.21691 0.29398 1.54984 1.63181 1.80615 2.03650 2.26670 2.57545 2.64615 3.25427 3.28237 3.64500 3.65482 3.86102 3.93677 4.07984 4.12390 4.31526 4.33901 4.43153 4.51331 4.56787 4.58365 4.62571 4.67638 4.78462 4.91432 5.06574 5.09281 5.12334 5.23213 5.41440 5.53158 5.59613 5.64156 5.74426 5.88757 5.92040 6.12405 6.39558 6.50851 6.63256 6.80953 7.52977 8.83585 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.003791 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.360682 B = 7385.067489 C = 7889.031398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C 0.206 3.794 4 H -0.041 1.041 5 C -0.593 4.593 6 H 0.048 0.952 7 C -0.025 4.025 8 N -0.939 5.939 9 Si 1.111 2.889 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.286 1.286 13 N -0.665 5.665 14 C 0.103 3.897 15 C -0.074 4.074 16 C -0.095 4.095 17 C -0.114 4.114 18 C 0.038 3.962 19 C 0.041 3.959 20 C -0.122 4.122 21 O -0.328 6.328 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.319 6.319 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.019 0.981 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 8.316 -20.815 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C 0.097 3.903 4 H -0.024 1.024 5 C -0.631 4.631 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.577 5.577 9 Si 0.934 3.066 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.211 1.211 13 N -0.296 5.296 14 C -0.025 4.025 15 C -0.075 4.075 16 C -0.113 4.113 17 C -0.132 4.132 18 C -0.007 4.007 19 C -0.004 4.004 20 C -0.142 4.142 21 O -0.243 6.243 22 C -0.062 4.062 23 C -0.060 4.060 24 O -0.234 6.234 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.513 7.962 -19.373 21.096 hybrid contribution 1.298 0.491 -1.211 1.842 sum -1.215 8.453 -20.584 22.285 Atomic orbital electron populations 1.21333 0.95037 0.98928 1.01431 1.21413 0.97541 0.97112 0.98007 1.19152 0.91030 0.92732 0.87413 1.02382 1.22195 1.29870 1.18347 0.92732 0.93374 1.26976 0.95459 0.96892 1.03002 1.70871 1.25886 1.25572 1.35388 0.82993 0.75582 0.75210 0.72777 1.20431 1.19704 1.21139 1.60629 1.50897 1.12986 1.05048 1.20851 0.93528 0.99205 0.88955 1.19563 0.97641 0.94155 0.96163 1.20979 0.96754 1.00904 0.92679 1.20667 1.00960 0.92846 0.98738 1.19002 0.97271 0.95169 0.89234 1.18854 0.96180 0.88146 0.97227 1.20368 1.02456 0.94229 0.97118 1.86285 1.74103 1.31436 1.32501 1.23984 0.97537 1.03144 0.81495 1.23953 0.95874 0.79444 1.06704 1.86270 1.79021 1.23422 1.34734 0.94122 0.94291 0.92551 0.94107 0.94972 0.92846 0.85216 0.96255 0.90128 0.83627 0.82715 0.85859 0.83000 0.90097 0.90541 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.53 71.98 0.69 -4.04 16 2 C -0.10 -4.77 5.47 30.59 0.17 -4.60 16 3 C 0.21 10.27 1.92 44.17 0.08 10.35 16 4 H -0.04 -2.30 7.31 -2.39 -0.02 -2.32 16 5 C -0.59 -32.55 6.92 25.60 0.18 -32.37 16 6 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 7 C -0.02 -1.38 5.28 84.65 0.45 -0.93 16 8 N -0.94 -56.56 13.20 21.45 0.28 -56.28 16 9 Si 1.11 50.36 29.91 68.60 2.05 52.41 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.67 -28.04 5.85 -499.47 -2.92 -30.96 16 14 C 0.10 3.70 5.63 85.56 0.48 4.18 16 15 C -0.07 -2.33 5.34 -19.87 -0.11 -2.44 16 16 C -0.09 -2.58 9.69 22.26 0.22 -2.36 16 17 C -0.11 -2.85 9.96 22.37 0.22 -2.63 16 18 C 0.04 1.02 6.49 22.56 0.15 1.17 16 19 C 0.04 1.18 6.49 22.56 0.15 1.33 16 20 C -0.12 -3.84 9.61 22.37 0.22 -3.62 16 21 O -0.33 -8.48 10.42 -82.48 -0.86 -9.34 16 22 C 0.01 0.20 7.26 72.14 0.52 0.72 16 23 C 0.01 0.21 7.26 72.14 0.52 0.74 16 24 O -0.32 -7.20 10.42 -82.52 -0.86 -8.06 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.84 6.89 -2.39 -0.02 1.83 16 27 H 0.06 2.28 7.89 -2.39 -0.02 2.26 16 28 H 0.04 1.71 7.13 -2.39 -0.02 1.69 16 29 H 0.03 1.66 6.18 -2.39 -0.01 1.64 16 30 H 0.26 15.84 5.62 -92.71 -0.52 15.31 16 31 H 0.33 14.34 8.30 -89.69 -0.74 13.60 16 32 H 0.02 0.73 7.89 -2.39 -0.02 0.71 16 33 H 0.08 2.76 7.14 -2.39 -0.02 2.74 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.81 324.98 2.17 -64.64 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.54 Total: 22.11 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.93 Total: -34.51 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.64 Total: -87.24 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.72 Total: -17.40 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Total: -66.81 2.17 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.688 kcal (2) G-P(sol) polarization free energy of solvation -66.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds