Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 H 1.08994 * 109.47748 * 179.90915 * 3 2 1 5 5 C 1.50703 * 109.46909 * 299.91608 * 3 2 1 6 6 H 1.07997 * 120.00222 * 120.00317 * 5 3 2 7 7 C 1.37875 * 119.99649 * 299.98957 * 5 3 2 8 8 N 1.31517 * 119.99931 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47065 * 120.00685 * 9 7 5 12 12 H 1.48502 * 109.47106 * 240.00088 * 9 7 5 13 13 N 1.46908 * 109.46859 * 59.90740 * 3 2 1 14 14 C 1.46904 * 110.99731 * 85.97485 * 13 3 2 15 15 C 1.50699 * 109.47203 * 175.53103 * 14 13 3 16 16 C 1.38241 * 119.96056 * 260.00067 * 15 14 13 17 17 C 1.38211 * 120.10853 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.11395 * 0.07267 * 17 16 15 19 19 C 1.38655 * 120.06606 * 0.27845 * 18 17 16 20 20 C 1.38661 * 119.96919 * 80.01611 * 15 14 13 21 21 O 1.36105 * 119.40300 * 359.78609 * 20 15 14 22 22 C 1.43174 * 116.71338 * 162.84763 * 21 20 15 23 23 C 1.53465 * 108.26027 * 46.17857 * 22 21 20 24 24 O 1.36108 * 119.40065 * 179.91083 * 19 18 17 25 25 H 1.09001 * 109.47319 * 55.59498 * 1 2 3 26 26 H 1.09001 * 109.47116 * 175.59428 * 1 2 3 27 27 H 1.08999 * 109.47123 * 295.59601 * 1 2 3 28 28 H 1.08998 * 109.47160 * 240.00462 * 2 1 3 29 29 H 1.09001 * 109.47124 * 120.00241 * 2 1 3 30 30 H 0.97000 * 119.99837 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00217 * 209.92879 * 13 3 2 32 32 H 1.08995 * 109.47302 * 55.52366 * 14 13 3 33 33 H 1.09007 * 109.46571 * 295.52863 * 14 13 3 34 34 H 1.07994 * 119.94824 * 359.94388 * 16 15 14 35 35 H 1.08004 * 119.94404 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.96355 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.70751 * 165.86966 * 22 21 20 38 38 H 1.09004 * 109.70379 * 286.49375 * 22 21 20 39 39 H 1.09000 * 109.71141 * 59.96267 * 23 22 21 40 40 H 1.08995 * 109.71472 * 180.54829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0016 5 6 1.5394 2.1523 -1.2315 6 1 0.9185 3.0305 -1.1338 7 6 1.8744 1.6806 -2.4831 8 7 2.6304 0.6111 -2.6020 9 14 1.2545 2.5608 -4.0096 10 1 0.4297 3.7283 -3.6073 11 1 2.4110 3.0267 -4.8163 12 1 0.4305 1.6274 -4.8189 13 7 1.5485 2.1356 1.1984 14 6 2.4430 1.9091 2.3415 15 6 1.9687 2.7211 3.5191 16 6 2.5840 3.9211 3.8230 17 6 2.1512 4.6686 4.9020 18 6 1.1024 4.2180 5.6818 19 6 0.4856 3.0118 5.3867 20 6 0.9157 2.2638 4.2968 21 8 0.3170 1.0825 3.9829 22 6 -0.4847 0.4762 5.0025 23 6 -1.3839 1.5589 5.6143 24 8 -0.5446 2.5802 6.1646 25 1 -0.3634 0.5807 -0.8479 26 1 -0.3633 -1.0246 -0.0789 27 1 -0.3633 0.4440 0.9268 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8658 0.2790 -3.4825 31 1 1.4294 3.1220 1.0223 32 1 3.4559 2.2116 2.0759 33 1 2.4367 0.8511 2.6036 34 1 3.4047 4.2749 3.2167 35 1 2.6336 5.6059 5.1368 36 1 0.7658 4.8042 6.5241 37 1 -1.1008 -0.3101 4.5666 38 1 0.1594 0.0543 5.7741 39 1 -2.0237 1.9853 4.8417 40 1 -1.9990 1.1240 6.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = -50.106321 kcal Electronic energy + Delta-G solvation = -22004.848385 eV Core-core repulsion = 18785.057271 eV Total energy + Delta-G solvation = -3219.791115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10444 -37.91071 -37.10392 -35.98557 -32.96494 -31.17573 -31.11049 -29.62920 -28.26513 -26.51403 -24.74197 -24.21422 -23.00015 -21.18282 -20.84212 -18.94036 -18.38585 -17.27064 -17.03205 -16.16572 -15.30132 -15.01470 -14.87311 -14.57100 -14.31609 -14.14111 -13.79207 -13.52505 -13.35901 -12.96692 -12.58637 -12.17405 -11.89014 -11.73793 -11.63580 -11.24648 -11.00737 -10.96375 -10.91443 -10.66531 -10.36207 -10.22522 -9.97333 -9.64373 -9.29650 -8.72882 -8.43414 -8.30283 -7.88672 -7.11677 -5.98000 -4.03029 1.43637 1.50081 3.12205 3.30461 3.38600 3.38687 3.42821 3.85792 4.27436 4.43867 4.72412 4.80969 4.89891 5.10201 5.20899 5.32898 5.36194 5.44018 5.45495 5.59122 5.70413 5.92806 6.04684 6.26900 6.40913 6.49598 6.61566 6.69680 6.77696 6.81531 6.94554 7.08126 7.34121 7.39297 7.56156 7.60541 7.82225 7.84855 7.91138 8.33640 8.46905 8.74254 9.07374 9.61541 11.07853 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.004778 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.657419 B = 5859.211219 C = 6437.292149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.673 5.673 14 C 0.106 3.894 15 C -0.067 4.067 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.122 4.122 19 C 0.039 3.961 20 C 0.075 3.925 21 O -0.280 6.280 22 C 0.018 3.982 23 C 0.021 3.979 24 O -0.313 6.313 25 H 0.053 0.947 26 H 0.010 0.990 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.009 0.991 30 H 0.259 0.741 31 H 0.329 0.671 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 2.685 16.557 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.304 5.304 14 C -0.023 4.023 15 C -0.069 4.069 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.005 4.005 20 C 0.029 3.971 21 O -0.193 6.193 22 C -0.058 4.058 23 C -0.054 4.054 24 O -0.228 6.228 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.351 1.991 16.577 17.253 hybrid contribution 0.242 0.781 -1.050 1.331 sum -4.108 2.772 15.527 16.299 Atomic orbital electron populations 1.21429 0.97569 0.97134 1.01385 1.21391 0.95030 0.98195 0.99231 1.19160 0.92863 0.91573 0.85554 0.98291 1.21232 1.31366 1.11855 0.90332 0.92313 1.24880 0.95103 0.95019 0.98865 1.69902 1.36877 1.22789 1.23241 0.86539 0.78557 0.79715 0.83179 1.19807 1.21188 1.21047 1.60742 1.48367 1.15692 1.05588 1.20740 0.93895 0.98605 0.89063 1.19491 0.93513 0.96244 0.97612 1.20920 1.00642 0.93820 0.97782 1.20805 0.97242 1.00170 0.95686 1.20315 0.98346 0.93520 1.01918 1.18882 0.92025 0.95332 0.94276 1.18695 0.95265 0.87279 0.95887 1.86567 1.61946 1.32997 1.37815 1.23590 0.94370 0.95764 0.92089 1.23597 0.92444 0.88815 1.00582 1.86250 1.39590 1.55037 1.41901 0.92755 0.97075 0.93653 0.89739 0.97214 0.93086 0.85420 0.95390 0.90830 0.85319 0.85459 0.85424 0.86265 0.91041 0.90449 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.52 37.16 0.35 -2.37 16 2 C -0.10 -2.48 5.59 -26.73 -0.15 -2.63 16 3 C 0.22 5.44 2.30 -68.86 -0.16 5.28 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -13.78 7.26 -34.44 -0.25 -14.03 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -14.61 5.64 -109.21 -0.62 -15.23 16 14 C 0.11 2.02 5.30 -4.97 -0.03 1.99 16 15 C -0.07 -1.13 5.36 -104.47 -0.56 -1.69 16 16 C -0.11 -1.61 9.66 -39.59 -0.38 -1.99 16 17 C -0.12 -1.51 10.04 -39.59 -0.40 -1.90 16 18 C -0.12 -1.61 9.96 -39.43 -0.39 -2.00 16 19 C 0.04 0.59 6.49 -39.14 -0.25 0.34 16 20 C 0.07 1.23 6.47 -39.14 -0.25 0.98 16 21 O -0.28 -4.63 9.60 -32.85 -0.32 -4.94 16 22 C 0.02 0.21 7.26 37.40 0.27 0.48 16 23 C 0.02 0.22 7.26 37.40 0.27 0.50 16 24 O -0.31 -4.25 10.42 -32.86 -0.34 -4.59 16 25 H 0.05 1.34 7.07 -51.93 -0.37 0.98 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 1.02 7.74 -51.93 -0.40 0.62 16 28 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.01 0.22 7.61 -51.93 -0.39 -0.18 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 7.12 8.13 -39.29 -0.32 6.80 16 32 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16 33 H 0.07 1.47 7.29 -51.92 -0.38 1.09 16 34 H 0.13 1.66 8.03 -52.49 -0.42 1.23 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.29 325.82 -8.68 -38.97 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.90 Total: 4.71 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.02 Total: -15.42 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.01 Total: -39.90 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.66 Total: -9.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.29 -8.68 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.136 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds