Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 H 1.08994 * 109.47748 * 179.90915 * 3 2 1 5 5 C 1.50703 * 109.46909 * 299.91608 * 3 2 1 6 6 H 1.07997 * 120.00222 * 120.00317 * 5 3 2 7 7 C 1.37875 * 119.99649 * 299.98957 * 5 3 2 8 8 N 1.31517 * 119.99931 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47065 * 120.00685 * 9 7 5 12 12 H 1.48502 * 109.47106 * 240.00088 * 9 7 5 13 13 N 1.46908 * 109.46859 * 59.90740 * 3 2 1 14 14 C 1.46904 * 110.99731 * 85.97485 * 13 3 2 15 15 C 1.50699 * 109.47203 * 175.53103 * 14 13 3 16 16 C 1.38241 * 119.96056 * 260.00067 * 15 14 13 17 17 C 1.38211 * 120.10853 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.11395 * 0.07267 * 17 16 15 19 19 C 1.38655 * 120.06606 * 0.27845 * 18 17 16 20 20 C 1.38661 * 119.96919 * 80.01611 * 15 14 13 21 21 O 1.36105 * 119.40300 * 359.78609 * 20 15 14 22 22 C 1.43174 * 116.71338 * 162.84763 * 21 20 15 23 23 C 1.53465 * 108.26027 * 46.17857 * 22 21 20 24 24 O 1.36108 * 119.40065 * 179.91083 * 19 18 17 25 25 H 1.09001 * 109.47319 * 55.59498 * 1 2 3 26 26 H 1.09001 * 109.47116 * 175.59428 * 1 2 3 27 27 H 1.08999 * 109.47123 * 295.59601 * 1 2 3 28 28 H 1.08998 * 109.47160 * 240.00462 * 2 1 3 29 29 H 1.09001 * 109.47124 * 120.00241 * 2 1 3 30 30 H 0.97000 * 119.99837 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00217 * 209.92879 * 13 3 2 32 32 H 1.08995 * 109.47302 * 55.52366 * 14 13 3 33 33 H 1.09007 * 109.46571 * 295.52863 * 14 13 3 34 34 H 1.07994 * 119.94824 * 359.94388 * 16 15 14 35 35 H 1.08004 * 119.94404 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.96355 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.70751 * 165.86966 * 22 21 20 38 38 H 1.09004 * 109.70379 * 286.49375 * 22 21 20 39 39 H 1.09000 * 109.71141 * 59.96267 * 23 22 21 40 40 H 1.08995 * 109.71472 * 180.54829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0016 5 6 1.5394 2.1523 -1.2315 6 1 0.9185 3.0305 -1.1338 7 6 1.8744 1.6806 -2.4831 8 7 2.6304 0.6111 -2.6020 9 14 1.2545 2.5608 -4.0096 10 1 0.4297 3.7283 -3.6073 11 1 2.4110 3.0267 -4.8163 12 1 0.4305 1.6274 -4.8189 13 7 1.5485 2.1356 1.1984 14 6 2.4430 1.9091 2.3415 15 6 1.9687 2.7211 3.5191 16 6 2.5840 3.9211 3.8230 17 6 2.1512 4.6686 4.9020 18 6 1.1024 4.2180 5.6818 19 6 0.4856 3.0118 5.3867 20 6 0.9157 2.2638 4.2968 21 8 0.3170 1.0825 3.9829 22 6 -0.4847 0.4762 5.0025 23 6 -1.3839 1.5589 5.6143 24 8 -0.5446 2.5802 6.1646 25 1 -0.3634 0.5807 -0.8479 26 1 -0.3633 -1.0246 -0.0789 27 1 -0.3633 0.4440 0.9268 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8658 0.2790 -3.4825 31 1 1.4294 3.1220 1.0223 32 1 3.4559 2.2116 2.0759 33 1 2.4367 0.8511 2.6036 34 1 3.4047 4.2749 3.2167 35 1 2.6336 5.6059 5.1368 36 1 0.7658 4.8042 6.5241 37 1 -1.1008 -0.3101 4.5666 38 1 0.1594 0.0543 5.7741 39 1 -2.0237 1.9853 4.8417 40 1 -1.9990 1.1240 6.4020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = -68.897004 kcal Electronic energy + Delta-G solvation = -22005.663210 eV Core-core repulsion = 18785.057271 eV Total energy + Delta-G solvation = -3220.605940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14950 -39.09382 -38.19350 -37.71944 -34.72738 -33.00178 -32.05901 -31.18652 -29.28805 -28.37470 -26.05922 -25.53670 -24.92079 -22.42646 -21.83853 -20.91215 -19.46991 -18.52808 -18.28116 -17.76470 -16.85167 -16.33372 -16.05822 -15.90144 -15.53215 -15.36455 -15.25964 -15.10381 -14.80778 -14.43819 -13.97068 -13.83904 -13.49389 -13.20904 -12.90104 -12.79765 -12.73140 -12.42024 -12.38864 -12.02146 -11.95660 -11.83838 -11.63476 -11.34132 -11.19198 -10.78094 -10.52672 -9.47148 -8.97467 -8.93062 -8.08266 -6.20543 0.31315 0.42266 1.41291 1.43769 1.54801 2.16186 2.41988 2.43558 2.75565 3.20276 3.34615 3.68295 3.80038 3.97793 4.05067 4.18297 4.27963 4.35678 4.41807 4.56657 4.62673 4.65840 4.67314 4.76865 4.81286 4.96495 5.02728 5.21697 5.31449 5.36312 5.43046 5.55934 5.57862 5.73285 5.77269 5.83304 5.90433 6.05192 6.29307 6.49676 6.55466 6.81793 7.04741 7.48132 8.97066 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.004778 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.657419 B = 5859.211219 C = 6437.292149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.095 4.095 3 C 0.222 3.778 4 H -0.036 1.036 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.116 3.884 15 C -0.094 4.094 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.119 4.119 19 C 0.029 3.971 20 C 0.058 3.942 21 O -0.313 6.313 22 C 0.010 3.990 23 C 0.020 3.980 24 O -0.319 6.319 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.014 0.986 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.138 0.862 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 3.925 17.875 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C 0.114 3.886 4 H -0.018 1.018 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.298 5.298 14 C -0.013 4.013 15 C -0.095 4.095 16 C -0.136 4.136 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.016 4.016 20 C 0.012 3.988 21 O -0.227 6.227 22 C -0.065 4.065 23 C -0.054 4.054 24 O -0.235 6.235 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.181 0.819 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.501 3.232 17.917 19.019 hybrid contribution 0.591 0.373 -1.355 1.525 sum -4.910 3.605 16.562 17.646 Atomic orbital electron populations 1.21255 0.95985 0.98090 1.00662 1.21266 0.96292 0.97706 0.98080 1.18953 0.90691 0.92198 0.86739 1.01833 1.21446 1.31293 1.11877 0.91287 0.92633 1.25623 0.95222 0.95657 1.01682 1.70033 1.37765 1.23965 1.23898 0.85544 0.78056 0.78697 0.79550 1.19205 1.20762 1.20750 1.60647 1.48896 1.15299 1.04931 1.20566 0.93284 0.98302 0.89150 1.19374 0.95193 0.97430 0.97476 1.21119 1.00710 0.93159 0.98596 1.21176 0.96556 1.00878 0.94240 1.20742 0.97797 0.92937 1.02328 1.19109 0.92654 0.95850 0.93994 1.18847 0.95545 0.87765 0.96615 1.86489 1.62791 1.33350 1.40110 1.23909 0.94480 0.96387 0.91740 1.23849 0.91936 0.87855 1.01801 1.86236 1.39432 1.55813 1.41983 0.94634 0.95051 0.93186 0.92390 0.96730 0.93020 0.85477 0.95749 0.92452 0.84377 0.81878 0.82863 0.84243 0.90295 0.90993 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.74 9.52 71.98 0.69 -4.06 16 2 C -0.09 -4.82 5.59 30.59 0.17 -4.65 16 3 C 0.22 11.57 2.30 44.17 0.10 11.67 16 4 H -0.04 -2.08 7.71 -2.39 -0.02 -2.09 16 5 C -0.52 -28.63 7.26 25.60 0.19 -28.44 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.95 5.30 84.65 0.45 1.40 16 8 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 9 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.67 -29.71 5.64 -499.43 -2.82 -32.52 16 14 C 0.12 4.56 5.30 85.56 0.45 5.02 16 15 C -0.09 -3.14 5.36 -19.76 -0.11 -3.25 16 16 C -0.12 -3.21 9.66 22.26 0.22 -3.00 16 17 C -0.11 -2.45 10.04 22.26 0.22 -2.23 16 18 C -0.12 -2.82 9.96 22.37 0.22 -2.60 16 19 C 0.03 0.82 6.49 22.56 0.15 0.96 16 20 C 0.06 1.91 6.47 22.56 0.15 2.05 16 21 O -0.31 -10.36 9.60 -82.53 -0.79 -11.15 16 22 C 0.01 0.22 7.26 72.14 0.52 0.74 16 23 C 0.02 0.39 7.26 72.14 0.52 0.91 16 24 O -0.32 -8.05 10.42 -82.57 -0.86 -8.91 16 25 H 0.03 1.75 7.07 -2.39 -0.02 1.73 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 2.24 7.74 -2.39 -0.02 2.22 16 28 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 29 H 0.01 0.69 7.61 -2.39 -0.02 0.67 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.33 14.52 8.13 -89.70 -0.73 13.79 16 32 H 0.02 0.96 7.80 -2.39 -0.02 0.94 16 33 H 0.06 2.40 7.29 -2.38 -0.02 2.38 16 34 H 0.14 3.42 8.03 -2.91 -0.02 3.39 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.12 325.82 2.05 -64.07 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.31 Total: 21.05 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.94 Total: -25.47 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.57 Total: -85.45 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -1.65 Total: -20.06 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.12 2.05 -64.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.825 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds