Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.08999 * 109.47392 * 177.96817 * 3 2 1 5 5 C 1.50697 * 109.47303 * 57.96828 * 3 2 1 6 6 H 1.07998 * 119.99897 * 240.00352 * 5 3 2 7 7 C 1.37871 * 120.00024 * 60.00008 * 5 3 2 8 8 N 1.31517 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47577 * 59.99882 * 9 7 5 11 11 H 1.48498 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47063 * 299.99545 * 9 7 5 13 13 N 1.46904 * 109.46867 * 297.96792 * 3 2 1 14 14 C 1.46898 * 111.00139 * 273.75427 * 13 3 2 15 15 C 1.50699 * 109.47452 * 174.74834 * 14 13 3 16 16 C 1.38241 * 119.96719 * 260.00207 * 15 14 13 17 17 C 1.38205 * 120.11182 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.11715 * 0.06784 * 17 16 15 19 19 C 1.38654 * 120.06323 * 0.28619 * 18 17 16 20 20 C 1.38665 * 119.96738 * 80.02032 * 15 14 13 21 21 O 1.36105 * 119.40092 * 359.78322 * 20 15 14 22 22 C 1.43179 * 116.71080 * 162.85008 * 21 20 15 23 23 C 1.53462 * 108.25795 * 46.17813 * 22 21 20 24 24 O 1.36110 * 119.40310 * 179.91129 * 19 18 17 25 25 H 1.09008 * 109.46947 * 294.45058 * 1 2 3 26 26 H 1.08997 * 109.47302 * 54.44522 * 1 2 3 27 27 H 1.09000 * 109.47314 * 174.45230 * 1 2 3 28 28 H 1.08999 * 109.46890 * 239.99932 * 2 1 3 29 29 H 1.09001 * 109.47406 * 119.99782 * 2 1 3 30 30 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 31 31 H 1.00907 * 110.99930 * 149.80044 * 13 3 2 32 32 H 1.08997 * 109.47147 * 54.74221 * 14 13 3 33 33 H 1.09007 * 109.47284 * 294.74943 * 14 13 3 34 34 H 1.07998 * 119.94323 * 359.94393 * 16 15 14 35 35 H 1.08005 * 119.94438 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.96713 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.70466 * 165.87118 * 22 21 20 38 38 H 1.09001 * 109.70295 * 286.49036 * 22 21 20 39 39 H 1.08999 * 109.71011 * 59.96907 * 23 22 21 40 40 H 1.09005 * 109.70742 * 180.54558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4970 2.1673 1.2045 6 1 0.8800 3.0441 1.0743 7 6 1.7879 1.7112 2.4726 8 7 2.5389 0.6433 2.6311 9 14 1.1143 2.6093 3.9656 10 1 -0.3699 2.6086 3.9159 11 1 1.5689 1.9242 5.2022 12 1 1.6089 4.0096 3.9658 13 7 1.5908 2.1206 -1.2233 14 6 2.5279 1.8856 -2.3299 15 6 1.9715 2.4857 -3.5954 16 6 1.3412 1.6780 -4.5235 17 6 0.8294 2.2252 -5.6848 18 6 0.9473 3.5818 -5.9230 19 6 1.5849 4.3963 -4.9997 20 6 2.0928 3.8473 -3.8279 21 8 2.7124 4.6305 -2.9031 22 6 3.1451 5.9233 -3.3407 23 6 2.0005 6.5713 -4.1313 24 8 1.6950 5.7299 -5.2487 25 1 -0.3633 0.4254 0.9356 26 1 -0.3634 0.5975 -0.8360 27 1 -0.3634 -1.0228 -0.0993 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.7439 0.3226 3.5233 31 1 1.4616 3.1084 -1.0625 32 1 2.6669 0.8133 -2.4667 33 1 3.4868 2.3496 -2.0988 34 1 1.2489 0.6176 -4.3409 35 1 0.3370 1.5918 -6.4079 36 1 0.5461 4.0069 -6.8312 37 1 3.3906 6.5406 -2.4766 38 1 4.0215 5.8203 -3.9806 39 1 1.1221 6.6687 -3.4933 40 1 2.3088 7.5553 -4.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -51.349715 kcal Electronic energy + Delta-G solvation = -21918.537088 eV Core-core repulsion = 18698.692056 eV Total energy + Delta-G solvation = -3219.845032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15261 -37.89890 -37.18551 -35.98870 -32.95467 -31.16971 -31.14245 -29.66767 -28.29739 -26.50737 -24.80836 -24.18740 -23.01448 -21.17155 -20.89073 -18.93532 -18.46051 -17.33198 -16.90827 -16.23640 -15.33183 -15.06584 -14.87631 -14.59284 -14.31621 -14.18936 -13.76572 -13.66529 -13.48574 -12.93011 -12.62817 -12.11699 -11.97058 -11.74303 -11.44759 -11.18846 -11.09290 -11.03177 -10.87743 -10.71826 -10.40303 -10.24868 -10.02763 -9.65694 -9.30793 -8.75039 -8.43504 -8.28515 -7.92781 -7.13672 -5.97363 -4.02052 1.46265 1.48645 3.08707 3.31435 3.32964 3.37539 3.40407 3.86609 4.22815 4.44167 4.70701 4.76384 4.85376 5.13200 5.17603 5.33573 5.37300 5.40374 5.42836 5.60501 5.73661 5.96021 6.02530 6.27892 6.38241 6.46967 6.58535 6.73496 6.77669 6.81606 6.91767 7.04579 7.29411 7.37064 7.52992 7.56976 7.80173 7.84885 7.90511 8.32430 8.46728 8.74175 9.07523 9.62087 11.08708 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.005021 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.755517 B = 5574.764520 C = 6477.961477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.104 3.896 15 C -0.056 4.056 16 C -0.101 4.101 17 C -0.118 4.118 18 C -0.124 4.124 19 C 0.044 3.956 20 C 0.055 3.945 21 O -0.296 6.296 22 C 0.020 3.980 23 C 0.021 3.979 24 O -0.312 6.312 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.334 0.666 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 7.572 -15.098 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.308 5.308 14 C -0.026 4.026 15 C -0.057 4.057 16 C -0.120 4.120 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.001 4.001 20 C 0.010 3.990 21 O -0.211 6.211 22 C -0.055 4.055 23 C -0.054 4.054 24 O -0.227 6.227 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.378 6.992 -15.082 16.629 hybrid contribution 0.460 1.285 1.198 1.816 sum 0.083 8.277 -13.885 16.165 Atomic orbital electron populations 1.21437 0.97536 0.97055 1.01597 1.21423 0.95077 0.98234 0.99234 1.19121 0.93285 0.91590 0.85139 0.98244 1.21141 1.31482 1.11841 0.90362 0.92480 1.24867 0.95147 0.95037 0.98753 1.69882 1.37497 1.23109 1.22374 0.86653 0.79440 0.79716 0.82132 1.20244 1.21373 1.20469 1.60750 1.46624 1.16588 1.06858 1.20714 0.93913 0.99327 0.88617 1.19484 0.99442 0.89200 0.97604 1.20876 0.97890 1.00105 0.93157 1.20851 1.01034 0.93904 0.97877 1.20312 1.01201 0.93147 0.99677 1.18842 1.01668 0.83439 0.96153 1.18782 0.98819 0.91201 0.90220 1.86427 1.72820 1.26713 1.35093 1.23584 0.96451 0.84149 1.01360 1.23593 0.98852 0.94164 0.88822 1.86251 1.87244 1.14741 1.34498 0.93028 0.93390 0.96924 0.97178 0.89709 0.92982 0.84897 0.90915 0.95066 0.85077 0.85401 0.85415 0.86203 0.90890 0.90450 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.46 37.16 0.35 -2.38 16 2 C -0.10 -2.48 5.58 -26.73 -0.15 -2.63 16 3 C 0.22 5.47 2.30 -68.86 -0.16 5.31 16 4 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16 5 C -0.51 -13.89 7.34 -34.44 -0.25 -14.14 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.33 11.34 55.43 0.63 -24.70 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.85 5.50 -109.22 -0.60 -15.45 16 14 C 0.10 1.98 5.22 -4.98 -0.03 1.96 16 15 C -0.06 -0.95 5.45 -104.46 -0.57 -1.52 16 16 C -0.10 -1.48 9.66 -39.59 -0.38 -1.86 16 17 C -0.12 -1.49 10.04 -39.59 -0.40 -1.89 16 18 C -0.12 -1.65 9.96 -39.43 -0.39 -2.04 16 19 C 0.04 0.65 6.49 -39.14 -0.25 0.40 16 20 C 0.06 0.91 6.47 -39.13 -0.25 0.65 16 21 O -0.30 -4.78 9.50 -32.85 -0.31 -5.09 16 22 C 0.02 0.23 7.26 37.40 0.27 0.50 16 23 C 0.02 0.22 7.26 37.40 0.27 0.49 16 24 O -0.31 -4.22 10.42 -32.86 -0.34 -4.56 16 25 H 0.05 1.27 7.37 -51.92 -0.38 0.89 16 26 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.01 0.22 7.43 -51.93 -0.39 -0.17 16 29 H 0.08 2.30 6.12 -51.93 -0.32 1.98 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.33 7.52 8.14 -39.29 -0.32 7.20 16 32 H 0.07 1.36 7.25 -51.93 -0.38 0.99 16 33 H 0.03 0.63 7.82 -51.92 -0.41 0.22 16 34 H 0.13 1.75 8.03 -52.49 -0.42 1.33 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -30.23 325.66 -8.68 -38.91 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.90 Total: 5.14 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.04 Total: -15.50 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.03 Total: -40.15 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.65 Total: -9.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.23 -8.68 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.443 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds