Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.08999 * 109.47392 * 177.96817 * 3 2 1 5 5 C 1.50697 * 109.47303 * 57.96828 * 3 2 1 6 6 H 1.07998 * 119.99897 * 240.00352 * 5 3 2 7 7 C 1.37871 * 120.00024 * 60.00008 * 5 3 2 8 8 N 1.31517 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47577 * 59.99882 * 9 7 5 11 11 H 1.48498 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47063 * 299.99545 * 9 7 5 13 13 N 1.46904 * 109.46867 * 297.96792 * 3 2 1 14 14 C 1.46898 * 111.00139 * 273.75427 * 13 3 2 15 15 C 1.50699 * 109.47452 * 174.74834 * 14 13 3 16 16 C 1.38241 * 119.96719 * 260.00207 * 15 14 13 17 17 C 1.38205 * 120.11182 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.11715 * 0.06784 * 17 16 15 19 19 C 1.38654 * 120.06323 * 0.28619 * 18 17 16 20 20 C 1.38665 * 119.96738 * 80.02032 * 15 14 13 21 21 O 1.36105 * 119.40092 * 359.78322 * 20 15 14 22 22 C 1.43179 * 116.71080 * 162.85008 * 21 20 15 23 23 C 1.53462 * 108.25795 * 46.17813 * 22 21 20 24 24 O 1.36110 * 119.40310 * 179.91129 * 19 18 17 25 25 H 1.09008 * 109.46947 * 294.45058 * 1 2 3 26 26 H 1.08997 * 109.47302 * 54.44522 * 1 2 3 27 27 H 1.09000 * 109.47314 * 174.45230 * 1 2 3 28 28 H 1.08999 * 109.46890 * 239.99932 * 2 1 3 29 29 H 1.09001 * 109.47406 * 119.99782 * 2 1 3 30 30 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 31 31 H 1.00907 * 110.99930 * 149.80044 * 13 3 2 32 32 H 1.08997 * 109.47147 * 54.74221 * 14 13 3 33 33 H 1.09007 * 109.47284 * 294.74943 * 14 13 3 34 34 H 1.07998 * 119.94323 * 359.94393 * 16 15 14 35 35 H 1.08005 * 119.94438 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.96713 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.70466 * 165.87118 * 22 21 20 38 38 H 1.09001 * 109.70295 * 286.49036 * 22 21 20 39 39 H 1.08999 * 109.71011 * 59.96907 * 23 22 21 40 40 H 1.09005 * 109.70742 * 180.54558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4970 2.1673 1.2045 6 1 0.8800 3.0441 1.0743 7 6 1.7879 1.7112 2.4726 8 7 2.5389 0.6433 2.6311 9 14 1.1143 2.6093 3.9656 10 1 -0.3699 2.6086 3.9159 11 1 1.5689 1.9242 5.2022 12 1 1.6089 4.0096 3.9658 13 7 1.5908 2.1206 -1.2233 14 6 2.5279 1.8856 -2.3299 15 6 1.9715 2.4857 -3.5954 16 6 1.3412 1.6780 -4.5235 17 6 0.8294 2.2252 -5.6848 18 6 0.9473 3.5818 -5.9230 19 6 1.5849 4.3963 -4.9997 20 6 2.0928 3.8473 -3.8279 21 8 2.7124 4.6305 -2.9031 22 6 3.1451 5.9233 -3.3407 23 6 2.0005 6.5713 -4.1313 24 8 1.6950 5.7299 -5.2487 25 1 -0.3633 0.4254 0.9356 26 1 -0.3634 0.5975 -0.8360 27 1 -0.3634 -1.0228 -0.0993 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.7439 0.3226 3.5233 31 1 1.4616 3.1084 -1.0625 32 1 2.6669 0.8133 -2.4667 33 1 3.4868 2.3496 -2.0988 34 1 1.2489 0.6176 -4.3409 35 1 0.3370 1.5918 -6.4079 36 1 0.5461 4.0069 -6.8312 37 1 3.3906 6.5406 -2.4766 38 1 4.0215 5.8203 -3.9806 39 1 1.1221 6.6687 -3.4933 40 1 2.3088 7.5553 -4.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -70.076818 kcal Electronic energy + Delta-G solvation = -21919.349156 eV Core-core repulsion = 18698.692056 eV Total energy + Delta-G solvation = -3220.657100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19677 -39.08248 -38.26941 -37.72693 -34.72402 -32.98881 -32.09163 -31.21441 -29.32141 -28.36713 -26.09883 -25.56765 -24.89201 -22.43328 -21.87531 -20.89490 -19.54570 -18.49404 -18.24743 -17.81672 -16.87539 -16.39359 -16.13745 -15.85321 -15.59224 -15.34168 -15.27369 -15.19669 -14.92352 -14.47060 -13.92991 -13.82292 -13.63271 -13.03492 -12.85131 -12.77561 -12.64292 -12.52115 -12.39340 -12.10489 -12.01535 -11.83502 -11.65678 -11.35307 -11.21890 -10.80005 -10.52763 -9.47053 -9.01985 -8.96398 -8.08631 -6.20723 0.33181 0.40617 1.41674 1.43224 1.50602 2.12149 2.36016 2.42836 2.75743 3.19742 3.31749 3.64685 3.88272 3.93811 3.98393 4.12391 4.27386 4.37411 4.42825 4.56116 4.59228 4.62317 4.69549 4.76936 4.82486 4.96394 4.99739 5.20832 5.31820 5.35600 5.40899 5.56852 5.62132 5.71949 5.77936 5.83881 5.91386 5.99872 6.28650 6.45217 6.52364 6.78609 7.01879 7.47445 8.96390 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.005021 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.755517 B = 5574.764520 C = 6477.961477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C 0.222 3.778 4 H -0.039 1.039 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.113 3.887 15 C -0.084 4.084 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.033 3.967 20 C 0.039 3.961 21 O -0.328 6.328 22 C 0.012 3.988 23 C 0.020 3.980 24 O -0.319 6.319 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 8.456 -16.608 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.021 1.021 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.298 5.298 14 C -0.016 4.016 15 C -0.085 4.085 16 C -0.126 4.126 17 C -0.126 4.126 18 C -0.140 4.140 19 C -0.012 4.012 20 C -0.006 4.006 21 O -0.243 6.243 22 C -0.063 4.063 23 C -0.054 4.054 24 O -0.234 6.234 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.031 0.969 34 H 0.159 0.841 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.635 7.889 -16.610 18.461 hybrid contribution 0.897 1.064 1.587 2.111 sum -0.738 8.953 -15.023 17.504 Atomic orbital electron populations 1.21288 0.95987 0.98518 1.00520 1.21296 0.96319 0.97366 0.98524 1.18935 0.90865 0.92516 0.86323 1.02139 1.21371 1.31511 1.11904 0.91434 0.92955 1.25604 0.95335 0.95721 1.01407 1.70016 1.38340 1.24239 1.22909 0.85676 0.78895 0.78687 0.78759 1.19703 1.20935 1.19879 1.60710 1.47143 1.15854 1.06131 1.20589 0.92742 0.99278 0.89017 1.19372 1.01778 0.90079 0.97252 1.21084 0.97581 1.00457 0.93476 1.21225 0.99784 0.94136 0.97459 1.20747 0.99983 0.93326 0.99979 1.19078 1.01820 0.84391 0.95924 1.18932 0.99469 0.91207 0.90988 1.86366 1.73096 1.28629 1.36232 1.23912 0.97039 0.82678 1.02684 1.23853 0.98277 0.95104 0.88212 1.86236 1.87216 1.14230 1.35742 0.95218 0.92895 0.94433 0.95804 0.92406 0.92986 0.85513 0.90946 0.96936 0.84138 0.81745 0.82818 0.84141 0.90242 0.90859 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.46 71.98 0.68 -4.12 16 2 C -0.10 -4.80 5.58 30.59 0.17 -4.63 16 3 C 0.22 11.61 2.30 44.17 0.10 11.71 16 4 H -0.04 -2.29 7.84 -2.39 -0.02 -2.31 16 5 C -0.52 -29.16 7.34 25.60 0.19 -28.98 16 6 H 0.05 2.90 7.60 -2.91 -0.02 2.88 16 7 C 0.02 1.03 5.30 84.65 0.45 1.48 16 8 N -0.92 -53.22 11.34 21.45 0.24 -52.98 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.67 -30.10 5.50 -499.46 -2.74 -32.85 16 14 C 0.11 4.47 5.22 85.56 0.45 4.91 16 15 C -0.08 -2.83 5.45 -19.76 -0.11 -2.94 16 16 C -0.11 -2.98 9.66 22.26 0.22 -2.77 16 17 C -0.11 -2.41 10.04 22.26 0.22 -2.19 16 18 C -0.12 -2.89 9.96 22.37 0.22 -2.66 16 19 C 0.03 0.93 6.49 22.56 0.15 1.08 16 20 C 0.04 1.29 6.47 22.56 0.15 1.44 16 21 O -0.33 -10.79 9.50 -82.54 -0.78 -11.58 16 22 C 0.01 0.25 7.26 72.14 0.52 0.78 16 23 C 0.02 0.38 7.26 72.14 0.52 0.91 16 24 O -0.32 -8.03 10.42 -82.59 -0.86 -8.89 16 25 H 0.03 1.44 7.37 -2.38 -0.02 1.42 16 26 H 0.05 2.32 7.50 -2.39 -0.02 2.30 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.02 1.08 7.43 -2.39 -0.02 1.06 16 29 H 0.06 3.21 6.12 -2.39 -0.01 3.19 16 30 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.33 15.30 8.14 -89.69 -0.73 14.57 16 32 H 0.07 2.80 7.25 -2.39 -0.02 2.78 16 33 H 0.01 0.53 7.82 -2.38 -0.02 0.52 16 34 H 0.14 3.53 8.03 -2.91 -0.02 3.51 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.16 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -66.37 325.66 2.12 -64.25 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.31 Total: 21.92 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.93 Total: -25.98 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.50 Total: -85.83 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.64 Total: -20.46 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.37 2.12 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.824 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds