Wall clock time and date at job start Mon Mar 30 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46935 * 2 1 4 4 C 1.52998 * 109.46854 * 60.00006 * 3 2 1 5 5 C 1.52998 * 109.47100 * 300.00291 * 3 2 1 6 6 C 1.50701 * 109.46857 * 179.97438 * 3 2 1 7 7 O 1.21288 * 120.00424 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99654 * 180.02562 * 6 3 2 9 9 C 1.39989 * 119.99880 * 175.49209 * 8 6 3 10 10 C 1.38915 * 120.00169 * 215.12025 * 9 8 6 11 11 C 1.38003 * 120.00052 * 180.02562 * 10 9 8 12 12 C 1.38911 * 119.99879 * 0.02656 * 11 10 9 13 13 O 1.35783 * 119.99690 * 179.97438 * 12 11 10 14 14 C 1.34817 * 117.00060 * 5.35003 * 13 12 11 15 15 H 1.08004 * 119.99628 * 354.95470 * 14 13 12 16 16 C 1.38633 * 119.99796 * 174.96442 * 14 13 12 17 17 N 1.31567 * 120.00230 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99603 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47097 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47058 * 119.99875 * 18 16 14 21 21 H 1.48501 * 109.46450 * 239.99485 * 18 16 14 22 22 C 1.38903 * 120.00326 * 0.25259 * 12 11 10 23 23 C 1.38008 * 120.00077 * 359.44976 * 22 12 11 24 24 H 1.08993 * 109.47304 * 299.99454 * 1 2 3 25 25 H 1.09001 * 109.47193 * 60.00551 * 1 2 3 26 26 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47362 * 240.00494 * 2 1 3 28 28 H 1.08997 * 109.47576 * 120.00098 * 2 1 3 29 29 H 1.08992 * 109.47266 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47312 * 300.00217 * 4 3 2 31 31 H 1.09004 * 109.47230 * 59.99698 * 4 3 2 32 32 H 1.09000 * 109.46851 * 299.99582 * 5 3 2 33 33 H 1.08995 * 109.47637 * 59.99829 * 5 3 2 34 34 H 1.09001 * 109.46790 * 180.02562 * 5 3 2 35 35 H 0.97001 * 119.99575 * 355.49570 * 8 6 3 36 36 H 1.08001 * 120.00412 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.00284 * 180.02562 * 11 10 9 38 38 H 0.97000 * 120.00111 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.00173 * 179.70331 * 22 12 11 40 40 H 1.08003 * 119.99883 * 180.28165 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 8 4.1535 0.3922 0.0006 8 7 4.2208 2.6098 0.0013 9 6 5.6174 2.6117 0.0971 10 6 6.2643 3.6229 0.7963 11 6 7.6411 3.6250 0.8903 12 6 8.3801 2.6163 0.2854 13 8 9.7348 2.6187 0.3775 14 6 10.2934 3.5630 1.1611 15 1 9.6747 4.3228 1.6155 16 6 11.6617 3.5587 1.3834 17 7 12.4153 2.6330 0.8301 18 14 12.4357 4.8676 2.4685 19 1 11.3800 5.7860 2.9659 20 1 13.1113 4.2191 3.6209 21 1 13.4310 5.6384 1.6808 22 6 7.7337 1.6084 -0.4186 23 6 6.3565 1.6028 -0.5075 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.8935 3.1912 1.2495 30 1 0.4399 2.1637 1.2493 31 1 1.8932 1.6499 2.1393 32 1 1.8933 1.6500 -2.1392 33 1 0.4399 2.1638 -1.2492 34 1 1.8936 3.1914 -1.2494 35 1 3.7380 3.4486 -0.0647 36 1 5.6898 4.4074 1.2663 37 1 8.1440 4.4109 1.4342 38 1 13.3727 2.6298 0.9860 39 1 8.3086 0.8268 -0.8929 40 1 5.8537 0.8165 -1.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054403091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:04 Heat of formation + Delta-G solvation = -50.341505 kcal Electronic energy + Delta-G solvation = -21106.314468 eV Core-core repulsion = 17886.513155 eV Total energy + Delta-G solvation = -3219.801313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53004 -38.84210 -37.03516 -35.99065 -33.97465 -32.18396 -30.47961 -30.19625 -27.76451 -27.65142 -25.40629 -24.96483 -22.55996 -22.05694 -20.64257 -19.03440 -17.95720 -17.45117 -16.91945 -16.16946 -15.30685 -15.08703 -14.60319 -14.55091 -14.26141 -14.07685 -13.57057 -13.55545 -13.01245 -12.87511 -12.69235 -12.48974 -12.34949 -12.17979 -11.81490 -11.70330 -11.54606 -11.53820 -11.42421 -11.03719 -10.84218 -10.81539 -10.67931 -10.43217 -9.64775 -9.47485 -9.18319 -8.69520 -8.19141 -6.91639 -6.43605 -4.01714 2.11488 2.22409 2.88315 3.13218 3.14276 3.19729 3.32893 3.97560 4.42370 4.50875 4.59266 4.65763 4.98062 5.08179 5.10816 5.22456 5.31159 5.32978 5.34800 5.52371 5.53907 5.58838 5.69659 5.75567 5.79127 5.80892 5.93034 6.08536 6.16851 6.20093 6.25139 6.31370 6.82554 6.87477 7.01195 7.18366 7.23727 7.42405 7.74748 7.80974 8.01032 8.41896 9.01858 9.72647 10.74538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.003237 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.502671 B = 8648.607495 C = 8943.192177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.142 4.142 5 C -0.143 4.143 6 C 0.514 3.486 7 O -0.526 6.526 8 N -0.659 5.659 9 C 0.035 3.965 10 C -0.091 4.091 11 C -0.220 4.220 12 C 0.147 3.853 13 O -0.177 6.177 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.179 4.179 23 C -0.068 4.068 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.269 0.731 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.961 1.589 -1.162 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.084 4.084 4 C -0.200 4.200 5 C -0.201 4.201 6 C 0.301 3.699 7 O -0.402 6.402 8 N -0.303 5.303 9 C -0.058 4.058 10 C -0.111 4.111 11 C -0.240 4.240 12 C 0.093 3.907 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.199 4.199 23 C -0.088 4.088 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.119 0.619 -1.255 21.165 hybrid contribution 0.199 1.185 0.613 1.349 sum -20.919 1.804 -0.642 21.007 Atomic orbital electron populations 1.21919 0.95622 1.01784 1.01904 1.21352 0.95228 0.93678 1.03563 1.20810 0.91397 0.98493 0.97700 1.21918 1.01793 1.00020 0.96254 1.21929 1.01925 0.99967 0.96247 1.20606 0.89547 0.83700 0.76077 1.90690 1.69804 1.31317 1.48355 1.43243 1.05573 1.08761 1.72765 1.17290 0.81316 1.00801 1.06365 1.20482 0.94256 0.98135 0.98214 1.20971 0.93165 1.02140 1.07710 1.19414 0.84961 0.92885 0.93418 1.83994 1.13564 1.50903 1.59616 1.21363 0.91510 1.06920 1.26957 0.89040 1.25290 0.95285 0.98205 0.97801 1.70055 1.05872 1.32390 1.41406 0.85649 0.79264 0.79408 0.79095 1.19123 1.20153 1.20167 1.20159 0.93331 1.00145 1.06284 1.20743 0.92488 0.97714 0.97813 0.92425 0.92439 0.92605 0.91196 0.91173 0.92184 0.91126 0.91958 0.91944 0.91078 0.92210 0.76532 0.87242 0.85130 0.92072 0.86158 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.21 37.16 0.34 -0.76 16 2 C -0.10 -1.00 4.28 -26.73 -0.11 -1.11 16 3 C -0.08 -0.79 0.65 -155.66 -0.10 -0.89 16 4 C -0.14 -1.15 8.02 37.16 0.30 -0.85 16 5 C -0.14 -1.10 8.02 37.16 0.30 -0.80 16 6 C 0.51 7.34 6.32 -10.98 -0.07 7.27 16 7 O -0.53 -9.70 13.42 5.55 0.07 -9.62 16 8 N -0.66 -9.17 5.12 -9.82 -0.05 -9.22 16 9 C 0.03 0.63 6.30 -83.63 -0.53 0.10 16 10 C -0.09 -1.65 9.96 -39.42 -0.39 -2.05 16 11 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 12 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 13 O -0.18 -5.13 9.76 -0.02 0.00 -5.13 16 14 C -0.39 -10.98 9.48 30.88 0.29 -10.69 16 15 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.18 -4.03 9.98 -39.42 -0.39 -4.43 16 23 C -0.07 -1.37 8.69 -39.41 -0.34 -1.71 16 24 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 25 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.77 8.10 -51.92 -0.42 0.35 16 28 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 30 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 34 H 0.06 0.40 7.47 -51.93 -0.39 0.02 16 35 H 0.40 4.16 7.68 -40.82 -0.31 3.85 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 40 H 0.13 2.55 6.23 -52.48 -0.33 2.22 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -32.77 325.69 -6.18 -38.94 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.42 Total: 6.06 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.43 Total: -16.73 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.71 Total: -33.97 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.07 Total: -14.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.77 -6.18 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.398 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds