Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46935 * 2 1 4 4 C 1.52998 * 109.46854 * 60.00006 * 3 2 1 5 5 C 1.52998 * 109.47100 * 300.00291 * 3 2 1 6 6 C 1.50701 * 109.46857 * 179.97438 * 3 2 1 7 7 O 1.21288 * 120.00424 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99654 * 180.02562 * 6 3 2 9 9 C 1.39989 * 119.99880 * 175.49209 * 8 6 3 10 10 C 1.38915 * 120.00169 * 215.12025 * 9 8 6 11 11 C 1.38003 * 120.00052 * 180.02562 * 10 9 8 12 12 C 1.38911 * 119.99879 * 0.02656 * 11 10 9 13 13 O 1.35783 * 119.99690 * 179.97438 * 12 11 10 14 14 C 1.34817 * 117.00060 * 5.35003 * 13 12 11 15 15 H 1.08004 * 119.99628 * 354.95470 * 14 13 12 16 16 C 1.38633 * 119.99796 * 174.96442 * 14 13 12 17 17 N 1.31567 * 120.00230 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99603 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47097 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47058 * 119.99875 * 18 16 14 21 21 H 1.48501 * 109.46450 * 239.99485 * 18 16 14 22 22 C 1.38903 * 120.00326 * 0.25259 * 12 11 10 23 23 C 1.38008 * 120.00077 * 359.44976 * 22 12 11 24 24 H 1.08993 * 109.47304 * 299.99454 * 1 2 3 25 25 H 1.09001 * 109.47193 * 60.00551 * 1 2 3 26 26 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47362 * 240.00494 * 2 1 3 28 28 H 1.08997 * 109.47576 * 120.00098 * 2 1 3 29 29 H 1.08992 * 109.47266 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47312 * 300.00217 * 4 3 2 31 31 H 1.09004 * 109.47230 * 59.99698 * 4 3 2 32 32 H 1.09000 * 109.46851 * 299.99582 * 5 3 2 33 33 H 1.08995 * 109.47637 * 59.99829 * 5 3 2 34 34 H 1.09001 * 109.46790 * 180.02562 * 5 3 2 35 35 H 0.97001 * 119.99575 * 355.49570 * 8 6 3 36 36 H 1.08001 * 120.00412 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.00284 * 180.02562 * 11 10 9 38 38 H 0.97000 * 120.00111 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.00173 * 179.70331 * 22 12 11 40 40 H 1.08003 * 119.99883 * 180.28165 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 8 4.1535 0.3922 0.0006 8 7 4.2208 2.6098 0.0013 9 6 5.6174 2.6117 0.0971 10 6 6.2643 3.6229 0.7963 11 6 7.6411 3.6250 0.8903 12 6 8.3801 2.6163 0.2854 13 8 9.7348 2.6187 0.3775 14 6 10.2934 3.5630 1.1611 15 1 9.6747 4.3228 1.6155 16 6 11.6617 3.5587 1.3834 17 7 12.4153 2.6330 0.8301 18 14 12.4357 4.8676 2.4685 19 1 11.3800 5.7860 2.9659 20 1 13.1113 4.2191 3.6209 21 1 13.4310 5.6384 1.6808 22 6 7.7337 1.6084 -0.4186 23 6 6.3565 1.6028 -0.5075 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.8935 3.1912 1.2495 30 1 0.4399 2.1637 1.2493 31 1 1.8932 1.6499 2.1393 32 1 1.8933 1.6500 -2.1392 33 1 0.4399 2.1638 -1.2492 34 1 1.8936 3.1914 -1.2494 35 1 3.7380 3.4486 -0.0647 36 1 5.6898 4.4074 1.2663 37 1 8.1440 4.4109 1.4342 38 1 13.3727 2.6298 0.9860 39 1 8.3086 0.8268 -0.8929 40 1 5.8537 0.8165 -1.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054403091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = -71.632556 kcal Electronic energy + Delta-G solvation = -21107.237717 eV Core-core repulsion = 17886.513155 eV Total energy + Delta-G solvation = -3220.724562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77814 -40.54389 -38.49654 -37.18401 -35.44124 -34.16282 -31.89664 -31.28110 -29.31239 -28.25065 -27.34044 -25.80039 -24.05445 -23.55522 -22.08823 -20.23234 -19.69633 -19.00252 -18.31517 -17.57410 -16.45143 -16.36415 -16.20102 -15.89027 -15.52090 -15.38254 -15.09005 -14.93532 -14.58031 -14.23886 -13.72317 -13.57094 -13.50942 -13.32267 -13.18825 -12.92958 -12.76268 -12.73065 -12.47985 -12.37928 -12.12852 -12.07853 -11.53816 -11.53026 -11.36450 -11.07664 -10.66568 -10.49949 -9.86566 -8.63078 -8.46119 -6.13839 0.49318 0.53024 1.36551 1.44033 1.55458 1.66046 2.13125 2.19476 2.81499 3.14380 3.50513 3.57233 3.75415 3.90558 4.03725 4.11356 4.22183 4.46464 4.47659 4.57407 4.60549 4.70235 4.75629 4.79085 4.90682 4.95375 5.06596 5.11153 5.14640 5.14961 5.17983 5.25744 5.30676 5.44049 5.45911 5.54949 5.56676 5.66836 6.02073 6.15567 6.54460 6.98012 7.24247 7.78694 8.77494 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.003237 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.502671 B = 8648.607495 C = 8943.192177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.509 3.491 7 O -0.572 6.572 8 N -0.647 5.647 9 C 0.061 3.939 10 C -0.079 4.079 11 C -0.220 4.220 12 C 0.108 3.892 13 O -0.232 6.232 14 C -0.412 4.412 15 H 0.107 0.893 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.021 2.979 19 H -0.247 1.247 20 H -0.271 1.271 21 H -0.269 1.269 22 C -0.192 4.192 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.423 0.577 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.272 0.728 39 H 0.110 0.890 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.836 4.207 -0.184 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.074 4.074 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.299 3.701 7 O -0.450 6.450 8 N -0.294 5.294 9 C -0.033 4.033 10 C -0.099 4.099 11 C -0.239 4.239 12 C 0.058 3.942 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.125 0.875 16 C -0.223 4.223 17 N -0.562 5.562 18 Si 0.841 3.159 19 H -0.170 1.170 20 H -0.196 1.196 21 H -0.194 1.194 22 C -0.212 4.212 23 C -0.095 4.095 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.262 0.738 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.096 3.264 -0.291 25.309 hybrid contribution 1.047 0.246 0.220 1.098 sum -24.048 3.510 -0.072 24.303 Atomic orbital electron populations 1.21886 0.92952 1.02455 1.03256 1.21360 0.97477 0.93573 1.01640 1.20844 0.87464 0.99032 1.00100 1.21968 1.03467 1.00242 0.94211 1.21977 1.03559 1.00197 0.94210 1.21611 0.91589 0.82743 0.74188 1.90684 1.71172 1.33061 1.50092 1.43209 1.03651 1.10184 1.72337 1.17436 0.83473 0.98999 1.03377 1.20855 0.92984 0.98928 0.97103 1.21138 0.94670 1.01141 1.06997 1.19850 0.84282 0.94761 0.95330 1.83963 1.15703 1.52466 1.61732 1.21927 0.92333 1.07353 1.27225 0.87550 1.26653 0.95540 1.00826 0.99277 1.70211 1.06325 1.35391 1.44241 0.84491 0.78444 0.76260 0.76752 1.16963 1.19623 1.19407 1.20264 0.94452 0.99925 1.06528 1.20836 0.91578 0.98736 0.98362 0.91060 0.90930 0.92476 0.93077 0.93350 0.90602 0.88521 0.93429 0.93112 0.88504 0.90645 0.73784 0.82281 0.84912 0.91880 0.87168 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.21 71.98 0.66 -0.99 16 2 C -0.10 -1.88 4.28 30.60 0.13 -1.75 16 3 C -0.07 -1.18 0.65 -52.93 -0.03 -1.22 16 4 C -0.14 -1.68 8.02 71.98 0.58 -1.10 16 5 C -0.14 -1.61 8.02 71.98 0.58 -1.03 16 6 C 0.51 13.52 6.32 87.66 0.55 14.07 16 7 O -0.57 -20.96 13.42 -3.05 -0.04 -21.00 16 8 N -0.65 -15.85 5.12 -303.38 -1.55 -17.41 16 9 C 0.06 2.07 6.30 38.16 0.24 2.31 16 10 C -0.08 -2.63 9.96 22.38 0.22 -2.41 16 11 C -0.22 -9.42 9.16 22.38 0.20 -9.21 16 12 C 0.11 5.57 6.65 22.59 0.15 5.72 16 13 O -0.23 -14.24 9.76 -22.97 -0.22 -14.47 16 14 C -0.41 -24.04 9.48 67.91 0.64 -23.39 16 15 H 0.11 5.57 5.20 -2.91 -0.02 5.56 16 16 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 17 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 18 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 19 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 C -0.19 -9.04 9.98 22.37 0.22 -8.82 16 23 C -0.08 -3.05 8.69 22.38 0.19 -2.85 16 24 H 0.07 0.62 6.43 -2.39 -0.02 0.60 16 25 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 28 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 30 H 0.10 0.70 6.43 -2.38 -0.02 0.68 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.65 6.43 -2.39 -0.02 0.64 16 34 H 0.07 0.64 7.47 -2.39 -0.02 0.62 16 35 H 0.42 6.69 7.68 -92.71 -0.71 5.97 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.13 5.58 5.63 -2.91 -0.02 5.57 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.11 5.24 8.06 -2.91 -0.02 5.21 16 40 H 0.13 5.24 6.23 -2.91 -0.02 5.22 16 Total: -1.00 -77.71 325.69 5.67 -72.05 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.35 Total: 24.96 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.81 Total: -31.70 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.26 Total: -74.62 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.27 Total: -35.47 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.71 5.67 -72.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.413 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds