Wall clock time and date at job start Mon Mar 30 2020 01:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46695 * 2 1 4 4 C 1.52999 * 109.47235 * 60.00064 * 3 2 1 5 5 C 1.53001 * 109.47248 * 299.99425 * 3 2 1 6 6 C 1.50702 * 109.46868 * 179.97438 * 3 2 1 7 7 O 1.21295 * 119.99849 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00390 * 180.02562 * 6 3 2 9 9 C 1.39921 * 120.00297 * 174.78346 * 8 6 3 10 10 C 1.38952 * 120.03630 * 326.32796 * 9 8 6 11 11 C 1.38157 * 120.06754 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.13784 * 359.70504 * 11 10 9 13 13 C 1.38902 * 120.06980 * 0.54195 * 12 11 10 14 14 O 1.35748 * 120.03503 * 179.74994 * 13 12 11 15 15 C 1.34837 * 117.00241 * 173.82610 * 14 13 12 16 16 H 1.07995 * 119.99706 * 354.60037 * 15 14 13 17 17 C 1.38653 * 119.99779 * 174.59057 * 15 14 13 18 18 N 1.31558 * 120.00382 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99565 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46935 * 120.00627 * 19 17 15 22 22 H 1.48497 * 109.47224 * 240.00447 * 19 17 15 23 23 C 1.38716 * 120.03490 * 146.34302 * 9 8 6 24 24 H 1.09002 * 109.46960 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47449 * 300.00178 * 1 2 3 26 26 H 1.09002 * 109.47109 * 60.00380 * 1 2 3 27 27 H 1.08995 * 109.47009 * 240.00065 * 2 1 3 28 28 H 1.08996 * 109.46727 * 119.99484 * 2 1 3 29 29 H 1.09004 * 109.46740 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46773 * 299.99204 * 4 3 2 31 31 H 1.08995 * 109.47116 * 59.99996 * 4 3 2 32 32 H 1.08998 * 109.47220 * 300.00377 * 5 3 2 33 33 H 1.09003 * 109.46896 * 60.00648 * 5 3 2 34 34 H 1.08993 * 109.47080 * 180.02562 * 5 3 2 35 35 H 0.97007 * 119.99381 * 354.78416 * 8 6 3 36 36 H 1.08007 * 119.96816 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.93182 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.96500 * 180.30303 * 12 11 10 39 39 H 0.96996 * 119.99778 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.06661 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 0.0006 7 8 4.1534 0.3922 0.0006 8 7 4.2209 2.6098 0.0013 9 6 5.6157 2.6123 0.1120 10 6 6.2544 1.6436 0.8765 11 6 7.6316 1.6458 0.9867 12 6 8.3784 2.6069 0.3327 13 6 7.7455 3.5810 -0.4288 14 8 8.4796 4.5279 -1.0669 15 6 7.8164 5.3646 -1.8905 16 1 6.7657 5.2096 -2.0859 17 6 8.4836 6.4241 -2.4863 18 7 9.7637 6.6127 -2.2485 19 14 7.5650 7.5828 -3.6279 20 1 6.1462 7.1562 -3.7291 21 1 7.6288 8.9642 -3.0869 22 1 8.1897 7.5492 -4.9746 23 6 6.3623 3.5820 -0.5409 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8936 3.1914 1.2494 30 1 0.4399 2.1638 1.2491 31 1 1.8933 1.6500 2.1392 32 1 1.8934 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2493 34 1 1.8936 3.1913 -1.2495 35 1 3.7388 3.4482 -0.0751 36 1 5.6737 0.8881 1.3850 37 1 8.1258 0.8920 1.5818 38 1 9.4551 2.6030 0.4169 39 1 10.2304 7.3536 -2.6656 40 1 5.8681 4.3364 -1.1352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054403092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:07 Heat of formation + Delta-G solvation = -52.273888 kcal Electronic energy + Delta-G solvation = -21383.741107 eV Core-core repulsion = 18163.855999 eV Total energy + Delta-G solvation = -3219.885108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58160 -38.84632 -36.97371 -36.00027 -34.25146 -32.24590 -30.63272 -29.18365 -28.39406 -27.62228 -25.37999 -25.02345 -22.83734 -21.81175 -20.60501 -19.07820 -17.90929 -17.67029 -16.67083 -15.75731 -15.37204 -15.05098 -14.87745 -14.57312 -14.17390 -14.13162 -13.95340 -13.56339 -13.03677 -12.94002 -12.75792 -12.38441 -12.33591 -12.14745 -11.77949 -11.71146 -11.53686 -11.43892 -11.10119 -11.03532 -10.83425 -10.80708 -10.71131 -10.43771 -9.84572 -9.52523 -9.34523 -8.81075 -7.72255 -7.15412 -6.45715 -4.05371 1.97441 2.37651 2.88419 3.11128 3.11367 3.17058 3.26524 3.95030 4.42775 4.51117 4.59005 4.66651 4.97481 5.09210 5.10725 5.23422 5.27572 5.33479 5.36785 5.54837 5.56472 5.71337 5.72895 5.77898 5.80739 5.93918 5.99545 6.08784 6.09737 6.20328 6.26547 6.29108 6.64084 6.98214 7.00167 7.12916 7.31103 7.42065 7.71889 7.82014 7.98808 8.34667 8.99863 9.70584 10.72493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.004384 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.280507 B = 6384.602788 C = 7489.299482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.143 4.143 5 C -0.145 4.145 6 C 0.519 3.481 7 O -0.520 6.520 8 N -0.668 5.668 9 C 0.181 3.819 10 C -0.206 4.206 11 C -0.063 4.063 12 C -0.201 4.201 13 C 0.168 3.832 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.257 4.257 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.405 0.595 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.506 -6.950 4.532 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.084 4.084 4 C -0.201 4.201 5 C -0.203 4.203 6 C 0.306 3.694 7 O -0.394 6.394 8 N -0.312 5.312 9 C 0.087 3.913 10 C -0.226 4.226 11 C -0.082 4.082 12 C -0.221 4.221 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.278 4.278 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.694 -7.498 4.466 18.838 hybrid contribution -0.688 1.109 -0.676 1.470 sum -17.382 -6.389 3.790 18.903 Atomic orbital electron populations 1.21919 0.95538 1.01783 1.01992 1.21352 0.95326 0.93592 1.03510 1.20826 0.91095 0.98597 0.97903 1.21926 1.01922 1.00143 0.96062 1.21947 1.01998 1.00140 0.96178 1.20648 0.89686 0.83518 0.75555 1.90709 1.69985 1.31157 1.47583 1.43538 1.05918 1.09291 1.72473 1.17432 0.81235 0.96702 0.95883 1.20524 0.94542 1.02288 1.05283 1.20530 0.93092 0.96888 0.97703 1.20247 0.99752 0.97461 1.04598 1.19080 0.89364 0.89441 0.90688 1.84019 1.34542 1.37942 1.51512 1.21318 0.95393 1.07668 1.22408 0.89235 1.25275 0.95948 0.97090 0.98176 1.70045 1.08189 1.29735 1.41743 0.85666 0.79044 0.79506 0.79293 1.19212 1.20144 1.20123 1.20823 0.93954 1.04487 1.08566 0.92595 0.92390 0.92372 0.91176 0.91209 0.92035 0.90997 0.91960 0.91858 0.90960 0.92051 0.75966 0.86443 0.86635 0.86384 0.92070 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.21 37.16 0.34 -0.81 16 2 C -0.10 -1.01 4.28 -26.73 -0.11 -1.13 16 3 C -0.08 -0.84 0.65 -155.66 -0.10 -0.95 16 4 C -0.14 -1.21 8.02 37.16 0.30 -0.92 16 5 C -0.15 -1.29 8.02 37.16 0.30 -1.00 16 6 C 0.52 7.75 6.22 -10.99 -0.07 7.69 16 7 O -0.52 -9.68 13.69 5.54 0.08 -9.61 16 8 N -0.67 -10.27 5.12 -9.88 -0.05 -10.32 16 9 C 0.18 3.51 6.27 -83.72 -0.52 2.99 16 10 C -0.21 -4.02 8.65 -39.35 -0.34 -4.36 16 11 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 12 C -0.20 -4.37 9.99 -39.36 -0.39 -4.76 16 13 C 0.17 4.12 6.64 -39.14 -0.26 3.86 16 14 O -0.18 -5.05 9.76 0.04 0.00 -5.05 16 15 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 16 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 19 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 23 C -0.26 -5.62 9.04 -39.21 -0.35 -5.98 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 26 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 27 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 30 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.51 7.46 -51.93 -0.39 0.13 16 35 H 0.40 5.04 7.68 -40.82 -0.31 4.72 16 36 H 0.12 2.25 6.43 -52.48 -0.34 1.91 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -32.50 326.10 -6.19 -38.69 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.44 Total: 7.11 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.42 Total: -16.58 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.71 Total: -34.76 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.50 -6.19 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.589 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds