Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46695 * 2 1 4 4 C 1.52999 * 109.47235 * 60.00064 * 3 2 1 5 5 C 1.53001 * 109.47248 * 299.99425 * 3 2 1 6 6 C 1.50702 * 109.46868 * 179.97438 * 3 2 1 7 7 O 1.21295 * 119.99849 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00390 * 180.02562 * 6 3 2 9 9 C 1.39921 * 120.00297 * 174.78346 * 8 6 3 10 10 C 1.38952 * 120.03630 * 326.32796 * 9 8 6 11 11 C 1.38157 * 120.06754 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.13784 * 359.70504 * 11 10 9 13 13 C 1.38902 * 120.06980 * 0.54195 * 12 11 10 14 14 O 1.35748 * 120.03503 * 179.74994 * 13 12 11 15 15 C 1.34837 * 117.00241 * 173.82610 * 14 13 12 16 16 H 1.07995 * 119.99706 * 354.60037 * 15 14 13 17 17 C 1.38653 * 119.99779 * 174.59057 * 15 14 13 18 18 N 1.31558 * 120.00382 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99565 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46935 * 120.00627 * 19 17 15 22 22 H 1.48497 * 109.47224 * 240.00447 * 19 17 15 23 23 C 1.38716 * 120.03490 * 146.34302 * 9 8 6 24 24 H 1.09002 * 109.46960 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47449 * 300.00178 * 1 2 3 26 26 H 1.09002 * 109.47109 * 60.00380 * 1 2 3 27 27 H 1.08995 * 109.47009 * 240.00065 * 2 1 3 28 28 H 1.08996 * 109.46727 * 119.99484 * 2 1 3 29 29 H 1.09004 * 109.46740 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46773 * 299.99204 * 4 3 2 31 31 H 1.08995 * 109.47116 * 59.99996 * 4 3 2 32 32 H 1.08998 * 109.47220 * 300.00377 * 5 3 2 33 33 H 1.09003 * 109.46896 * 60.00648 * 5 3 2 34 34 H 1.08993 * 109.47080 * 180.02562 * 5 3 2 35 35 H 0.97007 * 119.99381 * 354.78416 * 8 6 3 36 36 H 1.08007 * 119.96816 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.93182 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.96500 * 180.30303 * 12 11 10 39 39 H 0.96996 * 119.99778 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.06661 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 0.0006 7 8 4.1534 0.3922 0.0006 8 7 4.2209 2.6098 0.0013 9 6 5.6157 2.6123 0.1120 10 6 6.2544 1.6436 0.8765 11 6 7.6316 1.6458 0.9867 12 6 8.3784 2.6069 0.3327 13 6 7.7455 3.5810 -0.4288 14 8 8.4796 4.5279 -1.0669 15 6 7.8164 5.3646 -1.8905 16 1 6.7657 5.2096 -2.0859 17 6 8.4836 6.4241 -2.4863 18 7 9.7637 6.6127 -2.2485 19 14 7.5650 7.5828 -3.6279 20 1 6.1462 7.1562 -3.7291 21 1 7.6288 8.9642 -3.0869 22 1 8.1897 7.5492 -4.9746 23 6 6.3623 3.5820 -0.5409 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8936 3.1914 1.2494 30 1 0.4399 2.1638 1.2491 31 1 1.8933 1.6500 2.1392 32 1 1.8934 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2493 34 1 1.8936 3.1913 -1.2495 35 1 3.7388 3.4482 -0.0751 36 1 5.6737 0.8881 1.3850 37 1 8.1258 0.8920 1.5818 38 1 9.4551 2.6030 0.4169 39 1 10.2304 7.3536 -2.6656 40 1 5.8681 4.3364 -1.1352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054403092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = -72.804776 kcal Electronic energy + Delta-G solvation = -21384.631393 eV Core-core repulsion = 18163.855999 eV Total energy + Delta-G solvation = -3220.775394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86518 -40.54272 -38.45488 -37.23062 -35.71373 -34.24167 -31.60338 -30.76344 -29.92643 -28.30034 -27.33493 -25.91126 -24.11265 -23.52530 -22.01485 -20.36247 -19.60973 -19.21113 -17.93115 -17.24439 -16.87468 -16.50867 -16.16557 -15.90776 -15.65266 -15.48730 -15.24732 -14.98104 -14.60562 -14.25083 -13.76542 -13.58457 -13.53973 -13.24917 -12.99766 -12.82354 -12.76693 -12.70891 -12.43820 -12.39819 -12.16574 -12.08706 -11.58501 -11.54253 -11.48373 -11.24754 -10.80895 -10.62914 -9.38011 -8.89811 -8.47395 -6.16417 0.37170 0.66790 1.35785 1.43718 1.54094 1.60323 2.02087 2.17569 2.82047 3.15240 3.46333 3.50324 3.70961 3.86790 4.07846 4.18369 4.30173 4.42430 4.44682 4.55576 4.60766 4.67762 4.73168 4.74271 4.86660 4.91317 5.00237 5.07515 5.09942 5.12197 5.12858 5.24387 5.37555 5.40965 5.45422 5.55276 5.64127 5.65055 6.00663 6.14591 6.43939 6.96907 7.09900 7.76076 8.75849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.004384 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.280507 B = 6384.602788 C = 7489.299482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.146 4.146 6 C 0.516 3.484 7 O -0.559 6.559 8 N -0.660 5.660 9 C 0.186 3.814 10 C -0.201 4.201 11 C -0.052 4.052 12 C -0.215 4.215 13 C 0.135 3.865 14 O -0.226 6.226 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.019 2.981 20 H -0.249 1.249 21 H -0.267 1.267 22 H -0.271 1.271 23 C -0.261 4.261 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.420 0.580 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.960 -7.092 4.794 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.075 4.075 4 C -0.199 4.199 5 C -0.203 4.203 6 C 0.305 3.695 7 O -0.436 6.436 8 N -0.306 5.306 9 C 0.091 3.909 10 C -0.222 4.222 11 C -0.070 4.070 12 C -0.234 4.234 13 C 0.084 3.916 14 O -0.132 6.132 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.838 3.162 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.282 4.282 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.259 0.741 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.206 -7.664 4.756 22.128 hybrid contribution 0.303 0.895 -0.602 1.120 sum -19.903 -6.769 4.153 21.429 Atomic orbital electron populations 1.21892 0.92936 1.02586 1.03199 1.21354 0.97498 0.93023 1.01938 1.20874 0.87226 0.99462 0.99924 1.21969 1.03599 0.99996 0.94338 1.22001 1.03750 1.00001 0.94519 1.21626 0.91641 0.82422 0.73807 1.90686 1.71233 1.32478 1.49226 1.43564 1.04258 1.10619 1.72149 1.17500 0.83260 0.95512 0.94582 1.20831 0.94918 1.01985 1.04475 1.20919 0.93007 0.96436 0.96637 1.20480 1.00289 0.97737 1.04923 1.19596 0.90669 0.89632 0.91692 1.83985 1.36222 1.39665 1.53328 1.21834 0.96102 1.08053 1.22967 0.88089 1.26594 0.96875 0.98654 0.99784 1.70190 1.10352 1.31141 1.44026 0.84531 0.78333 0.76806 0.76547 1.17225 1.19209 1.19583 1.20850 0.93250 1.05230 1.08891 0.92165 0.90966 0.91248 0.93086 0.92602 0.91317 0.88317 0.92703 0.93178 0.88197 0.91315 0.74129 0.85436 0.82853 0.86201 0.91788 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.21 71.98 0.66 -1.06 16 2 C -0.10 -1.85 4.28 30.60 0.13 -1.72 16 3 C -0.07 -1.32 0.65 -52.93 -0.03 -1.35 16 4 C -0.14 -1.92 8.02 71.98 0.58 -1.34 16 5 C -0.15 -2.14 8.02 71.98 0.58 -1.57 16 6 C 0.52 14.62 6.22 87.66 0.54 15.17 16 7 O -0.56 -20.38 13.69 -3.08 -0.04 -20.42 16 8 N -0.66 -19.23 5.12 -303.56 -1.55 -20.79 16 9 C 0.19 7.07 6.27 38.13 0.24 7.31 16 10 C -0.20 -7.60 8.65 22.42 0.19 -7.40 16 11 C -0.05 -1.91 10.03 22.23 0.22 -1.69 16 12 C -0.21 -9.46 9.99 22.41 0.22 -9.24 16 13 C 0.14 6.84 6.64 22.56 0.15 6.99 16 14 O -0.23 -13.55 9.76 -22.78 -0.22 -13.77 16 15 C -0.41 -23.77 9.44 67.92 0.64 -23.13 16 16 H 0.10 5.30 5.30 -2.91 -0.02 5.28 16 17 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 18 N -0.92 -55.94 13.67 21.61 0.30 -55.64 16 19 Si 1.02 41.92 29.55 68.60 2.03 43.95 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 C -0.26 -11.51 9.04 22.51 0.20 -11.30 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.65 6.43 -2.39 -0.02 0.63 16 26 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 27 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 28 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 29 H 0.07 0.85 7.69 -2.38 -0.02 0.83 16 30 H 0.10 0.85 6.43 -2.39 -0.02 0.84 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.95 6.43 -2.39 -0.02 0.94 16 34 H 0.07 0.92 7.46 -2.39 -0.02 0.90 16 35 H 0.42 9.55 7.68 -92.70 -0.71 8.84 16 36 H 0.13 4.64 6.43 -2.91 -0.02 4.62 16 37 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.12 5.13 8.06 -2.91 -0.02 5.10 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.13 5.58 5.72 -2.91 -0.02 5.56 16 Total: -1.00 -74.27 326.10 5.65 -68.62 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.35 Total: 29.13 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.80 Total: -31.08 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.26 Total: -76.43 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.26 Total: -34.19 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -74.27 5.65 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.181 kcal (2) G-P(sol) polarization free energy of solvation -74.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds