Wall clock time and date at job start Mon Mar 30 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 C 1.50699 * 109.47103 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99873 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99874 * 180.02562 * 4 3 2 7 7 C 1.39917 * 120.00075 * 185.27630 * 6 4 3 8 8 C 1.38933 * 120.04163 * 213.30012 * 7 6 4 9 9 C 1.38126 * 120.03704 * 180.02562 * 8 7 6 10 10 C 1.38215 * 120.12639 * 359.68018 * 9 8 7 11 11 C 1.38762 * 120.08446 * 0.59353 * 10 9 8 12 12 O 1.35893 * 120.02114 * 179.69880 * 11 10 9 13 13 C 1.42897 * 117.00074 * 359.73109 * 12 11 10 14 14 C 1.53004 * 109.47092 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46777 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99743 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00102 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46665 * 120.00218 * 19 17 15 22 22 H 1.48498 * 109.47284 * 240.00278 * 19 17 15 23 23 C 1.38631 * 119.95633 * 359.42885 * 11 10 9 24 24 H 1.09004 * 109.47308 * 299.99837 * 1 2 3 25 25 H 1.09003 * 109.47387 * 59.99745 * 1 2 3 26 26 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46589 * 240.00354 * 2 1 3 28 28 H 1.08997 * 109.47224 * 120.00645 * 2 1 3 29 29 H 1.08997 * 109.46799 * 60.00189 * 3 2 1 30 30 H 1.09003 * 109.47059 * 300.00456 * 3 2 1 31 31 H 0.96997 * 120.00199 * 5.26862 * 6 4 3 32 32 H 1.08000 * 119.98133 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.93323 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.95600 * 180.30031 * 10 9 8 35 35 H 1.09001 * 109.46881 * 299.99974 * 13 12 11 36 36 H 1.08998 * 109.47261 * 59.99940 * 13 12 11 37 37 H 1.09000 * 109.46979 * 299.99300 * 14 13 12 38 38 H 1.08998 * 109.47098 * 59.99863 * 14 13 12 39 39 H 0.96994 * 120.00572 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.05730 * 180.25295 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 5.6156 2.6122 -0.1122 8 6 6.3637 3.5869 0.5364 9 6 7.7404 3.5897 0.4253 10 6 8.3778 2.6198 -0.3254 11 6 7.6354 1.6473 -0.9800 12 8 8.2631 0.6980 -1.7226 13 6 9.6888 0.7649 -1.7904 14 6 10.2121 -0.3770 -2.6640 15 6 11.7158 -0.3066 -2.7349 16 1 12.2453 0.4746 -2.2098 17 6 12.4157 -1.2397 -3.4702 18 7 11.7709 -2.1908 -4.1101 19 14 14.2795 -1.1522 -3.5587 20 1 14.7594 0.0025 -2.7578 21 1 14.8602 -2.4064 -3.0155 22 1 14.7006 -0.9836 -4.9728 23 6 6.2534 1.6414 -0.8712 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7391 3.4478 0.0776 32 1 5.8684 4.3427 1.1277 33 1 8.3203 4.3483 0.9299 34 1 9.4548 2.6217 -0.4064 35 1 9.9875 1.7199 -2.2227 36 1 10.1049 0.6743 -0.7870 37 1 9.9135 -1.3317 -2.2312 38 1 9.7960 -0.2868 -3.6674 39 1 12.2632 -2.8470 -4.6277 40 1 5.6743 0.8828 -1.3767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055568358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:39 Heat of formation + Delta-G solvation = -70.613163 kcal Electronic energy + Delta-G solvation = -20356.573275 eV Core-core repulsion = 17135.892917 eV Total energy + Delta-G solvation = -3220.680358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65910 -39.28158 -37.23333 -34.73935 -34.52076 -33.32725 -30.86677 -29.96005 -29.12515 -27.81508 -25.02612 -23.40786 -22.27069 -21.82248 -20.72289 -20.12187 -18.34532 -17.26849 -16.39674 -16.25930 -15.94964 -15.45560 -15.33074 -15.22427 -14.53894 -14.45692 -14.18900 -13.44013 -13.43251 -13.01363 -12.74668 -12.37126 -12.30489 -12.06124 -11.76815 -11.65253 -11.49309 -11.39592 -11.03794 -10.92806 -10.79623 -10.53989 -10.31141 -9.86807 -9.80254 -9.62099 -9.25460 -8.43241 -8.22636 -7.80140 -6.07608 -4.12220 1.36960 1.65505 2.49467 2.84330 3.28351 3.35201 3.38961 3.86473 3.99177 4.39831 4.45939 4.57184 4.68021 5.00880 5.08919 5.15145 5.20112 5.26475 5.28702 5.38107 5.41883 5.48312 5.69753 5.74469 5.85249 5.92507 6.04295 6.06191 6.07566 6.30146 6.38313 6.54859 6.61727 6.77336 7.00331 7.24055 7.54613 7.68088 7.84387 7.97874 8.10297 8.26859 8.93682 9.51909 11.04074 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.003016 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.757380 B = 9280.715508 C =10342.523038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.505 3.495 5 O -0.509 6.509 6 N -0.675 5.675 7 C 0.177 3.823 8 C -0.198 4.198 9 C -0.061 4.061 10 C -0.226 4.226 11 C 0.164 3.836 12 O -0.312 6.312 13 C 0.065 3.935 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.164 4.164 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.356 12.781 9.811 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.178 4.178 4 C 0.293 3.707 5 O -0.383 6.383 6 N -0.321 5.321 7 C 0.083 3.917 8 C -0.218 4.218 9 C -0.080 4.080 10 C -0.246 4.246 11 C 0.116 3.884 12 O -0.225 6.225 13 C -0.009 4.009 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.185 4.185 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.028 11.653 9.560 25.066 hybrid contribution 0.999 0.622 0.049 1.178 sum -19.028 12.275 9.609 24.599 Atomic orbital electron populations 1.21787 0.95360 1.02124 1.01687 1.21314 0.95349 0.94419 1.03990 1.21729 0.90804 1.00688 1.04547 1.21016 0.90638 0.83376 0.75665 1.90799 1.70129 1.30995 1.46338 1.43555 1.05294 1.09771 1.73458 1.17305 0.82237 0.96379 0.95732 1.20616 0.94090 1.02164 1.04939 1.20663 0.93529 0.97168 0.96636 1.21384 1.00851 0.98245 1.04108 1.18957 0.91656 0.87992 0.89746 1.86190 1.24180 1.47570 1.64576 1.23351 0.74628 1.02057 1.00869 1.19139 0.95360 0.92068 0.94730 1.21010 0.90740 1.13257 1.31318 0.92295 1.25001 0.98879 0.95153 0.95231 1.69989 1.35659 1.15460 1.31640 0.86430 0.85033 0.78048 0.77864 1.19644 1.20842 1.20849 1.20259 0.92150 1.02467 1.03633 0.92744 0.92649 0.92271 0.90905 0.91055 0.88755 0.88555 0.75479 0.86145 0.85711 0.85037 0.93045 0.93045 0.95331 0.95379 0.92764 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.11 -0.92 5.22 -26.73 -0.14 -1.06 16 3 C -0.14 -0.95 5.70 -27.88 -0.16 -1.11 16 4 C 0.51 5.79 7.57 -10.99 -0.08 5.70 16 5 O -0.51 -8.39 13.67 5.55 0.08 -8.31 16 6 N -0.68 -6.87 5.34 -9.88 -0.05 -6.92 16 7 C 0.18 2.45 6.28 -83.72 -0.53 1.93 16 8 C -0.20 -2.39 9.96 -39.37 -0.39 -2.78 16 9 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 10 C -0.23 -3.66 9.04 -39.40 -0.36 -4.02 16 11 C 0.16 3.10 6.68 -39.24 -0.26 2.84 16 12 O -0.31 -6.91 10.13 -19.40 -0.20 -7.10 16 13 C 0.06 1.45 4.68 37.16 0.17 1.62 16 14 C 0.02 0.65 5.34 -27.88 -0.15 0.51 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.16 -2.87 8.59 -39.25 -0.34 -3.21 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 35 H 0.05 1.07 7.67 -51.93 -0.40 0.68 16 36 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.14 2.63 6.41 -52.49 -0.34 2.29 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -34.08 339.07 -8.03 -42.10 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.01 Total: -0.27 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.67 Total: -14.93 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.68 Total: -33.14 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.12 Total: -15.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.08 -8.03 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.509 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds