Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 C 1.50699 * 109.47103 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99873 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99874 * 180.02562 * 4 3 2 7 7 C 1.39917 * 120.00075 * 185.27630 * 6 4 3 8 8 C 1.38933 * 120.04163 * 213.30012 * 7 6 4 9 9 C 1.38126 * 120.03704 * 180.02562 * 8 7 6 10 10 C 1.38215 * 120.12639 * 359.68018 * 9 8 7 11 11 C 1.38762 * 120.08446 * 0.59353 * 10 9 8 12 12 O 1.35893 * 120.02114 * 179.69880 * 11 10 9 13 13 C 1.42897 * 117.00074 * 359.73109 * 12 11 10 14 14 C 1.53004 * 109.47092 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46777 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99743 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00102 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46665 * 120.00218 * 19 17 15 22 22 H 1.48498 * 109.47284 * 240.00278 * 19 17 15 23 23 C 1.38631 * 119.95633 * 359.42885 * 11 10 9 24 24 H 1.09004 * 109.47308 * 299.99837 * 1 2 3 25 25 H 1.09003 * 109.47387 * 59.99745 * 1 2 3 26 26 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46589 * 240.00354 * 2 1 3 28 28 H 1.08997 * 109.47224 * 120.00645 * 2 1 3 29 29 H 1.08997 * 109.46799 * 60.00189 * 3 2 1 30 30 H 1.09003 * 109.47059 * 300.00456 * 3 2 1 31 31 H 0.96997 * 120.00199 * 5.26862 * 6 4 3 32 32 H 1.08000 * 119.98133 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.93323 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.95600 * 180.30031 * 10 9 8 35 35 H 1.09001 * 109.46881 * 299.99974 * 13 12 11 36 36 H 1.08998 * 109.47261 * 59.99940 * 13 12 11 37 37 H 1.09000 * 109.46979 * 299.99300 * 14 13 12 38 38 H 1.08998 * 109.47098 * 59.99863 * 14 13 12 39 39 H 0.96994 * 120.00572 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.05730 * 180.25295 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 5.6156 2.6122 -0.1122 8 6 6.3637 3.5869 0.5364 9 6 7.7404 3.5897 0.4253 10 6 8.3778 2.6198 -0.3254 11 6 7.6354 1.6473 -0.9800 12 8 8.2631 0.6980 -1.7226 13 6 9.6888 0.7649 -1.7904 14 6 10.2121 -0.3770 -2.6640 15 6 11.7158 -0.3066 -2.7349 16 1 12.2453 0.4746 -2.2098 17 6 12.4157 -1.2397 -3.4702 18 7 11.7709 -2.1908 -4.1101 19 14 14.2795 -1.1522 -3.5587 20 1 14.7594 0.0025 -2.7578 21 1 14.8602 -2.4064 -3.0155 22 1 14.7006 -0.9836 -4.9728 23 6 6.2534 1.6414 -0.8712 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7391 3.4478 0.0776 32 1 5.8684 4.3427 1.1277 33 1 8.3203 4.3483 0.9299 34 1 9.4548 2.6217 -0.4064 35 1 9.9875 1.7199 -2.2227 36 1 10.1049 0.6743 -0.7870 37 1 9.9135 -1.3317 -2.2312 38 1 9.7960 -0.2868 -3.6674 39 1 12.2632 -2.8470 -4.6277 40 1 5.6743 0.8828 -1.3767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055568358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -93.075749 kcal Electronic energy + Delta-G solvation = -20357.547326 eV Core-core repulsion = 17135.892917 eV Total energy + Delta-G solvation = -3221.654409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71699 -40.59155 -38.53436 -35.77739 -35.36179 -35.33224 -32.61997 -31.21257 -30.47331 -28.55210 -27.01207 -24.53082 -23.58054 -23.06657 -21.96984 -21.18925 -19.68269 -18.47325 -18.13169 -17.24548 -17.06438 -16.93537 -16.76897 -16.66992 -16.23105 -15.35139 -15.19904 -14.50419 -14.47041 -14.34036 -14.30814 -14.01568 -13.36805 -13.28102 -12.89780 -12.77152 -12.68140 -12.66141 -12.55513 -12.23739 -12.04651 -11.80325 -11.64175 -11.60752 -11.42052 -11.24525 -10.88311 -10.65197 -9.43657 -9.02565 -8.28329 -6.42817 0.22088 0.46797 1.39733 1.41570 1.55101 1.57475 1.95009 2.29738 2.52523 2.81693 3.05909 3.68657 3.89617 3.96977 4.10680 4.15721 4.19575 4.24187 4.24458 4.43713 4.51591 4.57138 4.69412 4.70524 4.73075 4.79178 4.90196 5.22857 5.25672 5.26693 5.27184 5.33238 5.39321 5.42508 5.46127 5.50135 5.66626 5.90722 6.04741 6.42344 6.54061 6.72330 7.15198 7.27574 8.85465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.003016 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.757380 B = 9280.715508 C =10342.523038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.499 3.501 5 O -0.569 6.569 6 N -0.658 5.658 7 C 0.178 3.822 8 C -0.175 4.175 9 C -0.053 4.053 10 C -0.236 4.236 11 C 0.123 3.877 12 O -0.347 6.347 13 C 0.085 3.915 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.980 3.020 20 H -0.255 1.255 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.189 4.189 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.434 0.566 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.061 0.939 37 H -0.006 1.006 38 H -0.003 1.003 39 H 0.267 0.733 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 16.486 11.806 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.289 3.711 5 O -0.447 6.447 6 N -0.306 5.306 7 C 0.083 3.917 8 C -0.195 4.195 9 C -0.071 4.071 10 C -0.256 4.256 11 C 0.077 3.923 12 O -0.261 6.261 13 C 0.011 3.989 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.092 0.908 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.803 3.197 20 H -0.179 1.179 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.211 4.211 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.275 0.725 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.012 0.988 38 H 0.015 0.985 39 H 0.076 0.924 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.584 15.424 11.574 28.205 hybrid contribution 0.986 -0.484 -0.516 1.214 sum -19.597 14.940 11.058 27.010 Atomic orbital electron populations 1.21741 0.93136 1.02350 1.03066 1.21308 0.97187 0.95177 1.01778 1.21792 0.86878 1.00230 1.07552 1.21965 0.92519 0.82648 0.73969 1.90793 1.71618 1.33267 1.49019 1.43495 1.03924 1.10805 1.72371 1.17479 0.84087 0.95520 0.94620 1.21150 0.93776 1.01538 1.03081 1.21162 0.94353 0.96511 0.95054 1.21528 1.00921 0.98503 1.04600 1.19276 0.92334 0.89035 0.91680 1.86092 1.23634 1.49882 1.66523 1.22900 0.75475 1.00352 1.00207 1.18989 0.95739 0.92522 0.93809 1.21423 0.91277 1.13852 1.31620 0.90802 1.26120 1.04969 0.94442 0.94467 1.70144 1.38214 1.16440 1.32491 0.85173 0.77550 0.78648 0.78281 1.17864 1.20267 1.20116 1.20244 0.91762 1.03584 1.05470 0.91034 0.91469 0.92769 0.93649 0.93026 0.85050 0.85741 0.72526 0.81252 0.81596 0.84967 0.91626 0.92093 0.98798 0.98472 0.92418 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.89 5.22 30.59 0.16 -1.73 16 3 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 4 C 0.50 11.11 7.57 87.66 0.66 11.78 16 5 O -0.57 -19.93 13.67 -3.05 -0.04 -19.97 16 6 N -0.66 -11.88 5.34 -303.55 -1.62 -13.50 16 7 C 0.18 4.65 6.28 38.14 0.24 4.89 16 8 C -0.18 -3.51 9.96 22.41 0.22 -3.28 16 9 C -0.05 -1.18 10.03 22.24 0.22 -0.95 16 10 C -0.24 -7.47 9.04 22.39 0.20 -7.27 16 11 C 0.12 4.86 6.68 22.49 0.15 5.01 16 12 O -0.35 -16.56 10.13 -92.35 -0.94 -17.50 16 13 C 0.08 3.98 4.68 71.98 0.34 4.31 16 14 C 0.03 1.54 5.34 29.85 0.16 1.70 16 15 C -0.54 -31.71 9.11 25.60 0.23 -31.47 16 16 H 0.07 3.99 7.74 -2.91 -0.02 3.96 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 19 Si 0.98 44.47 29.54 68.60 2.03 46.49 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 C -0.19 -6.97 8.59 22.49 0.19 -6.77 16 24 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 29 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.43 3.30 8.82 -92.71 -0.82 2.49 16 32 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.13 4.06 6.29 -2.91 -0.02 4.04 16 35 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 36 H 0.06 2.68 7.65 -2.39 -0.02 2.66 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 4.56 6.41 -2.91 -0.02 4.54 16 Total: -1.00 -81.73 339.07 4.06 -77.67 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.22 Total: 10.66 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.13 Total: -25.46 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.34 Total: -71.89 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.98 Total: -37.47 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -81.73 4.06 -77.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.408 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds