Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99920 * 2 1 3 5 5 O 1.21288 * 119.99873 * 359.97438 * 4 2 1 6 6 N 1.34776 * 119.99874 * 180.02562 * 4 2 1 7 7 C 1.39918 * 119.99916 * 185.26990 * 6 4 2 8 8 C 1.38933 * 120.04335 * 213.30014 * 7 6 4 9 9 C 1.38122 * 120.04244 * 180.02562 * 8 7 6 10 10 C 1.38212 * 120.12233 * 359.67556 * 9 8 7 11 11 C 1.38762 * 120.08306 * 0.59814 * 10 9 8 12 12 O 1.35902 * 120.01919 * 179.69275 * 11 10 9 13 13 C 1.42898 * 117.00103 * 359.73677 * 12 11 10 14 14 C 1.52993 * 109.47455 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47432 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00199 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00156 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46910 * 90.00356 * 19 17 15 21 21 H 1.48497 * 109.47055 * 210.00084 * 19 17 15 22 22 H 1.48494 * 109.46996 * 330.00153 * 19 17 15 23 23 C 1.38624 * 119.96030 * 359.42842 * 11 10 9 24 24 H 1.08997 * 109.47459 * 299.99811 * 1 2 3 25 25 H 1.08997 * 109.47202 * 60.00625 * 1 2 3 26 26 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47059 * 240.00143 * 2 1 3 28 28 H 1.09000 * 109.46946 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46927 * 300.00120 * 3 2 1 30 30 H 1.08997 * 109.46856 * 59.99820 * 3 2 1 31 31 H 0.96997 * 120.00199 * 5.26862 * 6 4 2 32 32 H 1.08004 * 119.97479 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.93863 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.95737 * 180.29849 * 10 9 8 35 35 H 1.09000 * 109.46962 * 299.99336 * 13 12 11 36 36 H 1.09007 * 109.47475 * 59.99125 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99541 * 14 13 12 38 38 H 1.08997 * 109.47470 * 59.99819 * 14 13 12 39 39 H 0.96999 * 120.00155 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.06124 * 180.25015 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2441 -1.1709 2.0291 6 7 3.3574 -0.8331 1.4440 7 6 3.8248 -1.5865 2.5264 8 6 4.9931 -1.2146 3.1799 9 6 5.4547 -1.9587 4.2481 10 6 4.7528 -3.0705 4.6738 11 6 3.5884 -3.4499 4.0213 12 8 2.9025 -4.5470 4.4372 13 6 3.4409 -5.2660 5.5486 14 6 2.5389 -6.4593 5.8694 15 6 3.1070 -7.2179 7.0411 16 1 4.0204 -6.8826 7.5098 17 6 2.4613 -8.3405 7.5140 18 7 2.9574 -9.0028 8.5362 19 14 0.8818 -8.9209 6.7029 20 1 1.2072 -9.8724 5.6102 21 1 0.0276 -9.5983 7.7111 22 1 0.1552 -7.7534 6.1426 23 6 3.1222 -2.7060 2.9486 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9870 -0.3991 0.8473 32 1 5.5406 -0.3432 2.8524 33 1 6.3633 -1.6684 4.7546 34 1 5.1136 -3.6476 5.5124 35 1 4.4408 -5.6222 5.3008 36 1 3.4943 -4.6077 6.4158 37 1 1.5391 -6.1028 6.1173 38 1 2.4852 -7.1177 5.0024 39 1 2.5029 -9.7924 8.8692 40 1 2.2138 -2.9974 2.4421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055568403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -64.365565 kcal Electronic energy + Delta-G solvation = -20647.299897 eV Core-core repulsion = 17426.890455 eV Total energy + Delta-G solvation = -3220.409442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80930 -39.41619 -37.33607 -34.90205 -34.56647 -33.30035 -31.10505 -29.82753 -29.13003 -27.48000 -25.30493 -24.37338 -22.59817 -21.83255 -20.51940 -19.95923 -18.43964 -17.46707 -16.76814 -16.10700 -15.79242 -15.59796 -15.38645 -15.34554 -14.47389 -14.23647 -14.07830 -13.47374 -13.30665 -13.12273 -12.83493 -12.71674 -12.53284 -12.27755 -11.88209 -11.80264 -11.60004 -11.52116 -11.46520 -10.92180 -10.84347 -10.36729 -10.15431 -9.96412 -9.85247 -9.76860 -9.32080 -8.60339 -8.28882 -7.87109 -6.11640 -4.12393 1.31662 1.59714 2.43843 2.78544 3.30981 3.38124 3.45029 3.76892 3.93289 4.27665 4.41595 4.46637 4.53631 4.92511 4.98041 5.15263 5.19279 5.22711 5.26189 5.34002 5.42166 5.46526 5.53138 5.64322 5.71703 5.85201 5.94809 5.95127 5.95467 6.25145 6.32428 6.43818 6.51336 6.65974 6.90486 7.13080 7.19083 7.26387 7.64641 7.92388 7.94767 8.40697 8.88960 9.48906 11.00851 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003373 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.100538 B = 8298.012684 C = 9350.821055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.511 3.489 5 O -0.509 6.509 6 N -0.673 5.673 7 C 0.177 3.823 8 C -0.196 4.196 9 C -0.060 4.060 10 C -0.225 4.225 11 C 0.163 3.837 12 O -0.317 6.317 13 C 0.072 3.928 14 C -0.010 4.010 15 C -0.526 4.526 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.164 4.164 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.409 0.591 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 21.438 -18.946 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.204 4.204 4 C 0.298 3.702 5 O -0.382 6.382 6 N -0.319 5.319 7 C 0.084 3.916 8 C -0.216 4.216 9 C -0.079 4.079 10 C -0.244 4.244 11 C 0.116 3.884 12 O -0.230 6.230 13 C -0.002 4.002 14 C -0.047 4.047 15 C -0.564 4.564 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.185 4.185 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.245 0.755 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.441 20.859 -18.358 27.825 hybrid contribution -0.160 -0.212 -0.410 0.488 sum 1.282 20.648 -18.768 27.932 Atomic orbital electron populations 1.21640 0.92097 1.03236 1.02302 1.21331 0.98758 0.97248 0.96085 1.21820 1.01083 0.94165 1.03287 1.20947 0.81715 0.79710 0.87825 1.90787 1.54911 1.46747 1.45728 1.43538 1.07852 1.51547 1.28930 1.17303 0.94380 0.90604 0.89360 1.20634 0.98778 1.02626 0.99571 1.20680 0.98596 0.93654 0.94978 1.21404 0.97519 1.01332 1.04144 1.18903 0.90137 0.86997 0.92395 1.86139 1.50288 1.36740 1.49785 1.23099 0.98500 0.93586 0.84996 1.19590 0.95887 0.91757 0.97468 1.20839 1.11329 1.10514 1.13701 0.90729 1.24927 0.97496 0.95972 0.94598 1.69893 1.39995 1.18771 1.24987 0.86761 0.83736 0.79453 0.79374 1.20061 1.21173 1.18691 1.20239 1.03336 0.95123 0.99787 0.91733 0.91852 0.91670 0.88144 0.92178 0.91110 0.91820 0.75472 0.86085 0.85585 0.84886 0.92432 0.92408 0.95348 0.95834 0.92463 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.48 37.16 0.32 -0.74 16 2 C -0.11 -0.79 3.27 -91.77 -0.30 -1.09 16 3 C -0.15 -0.71 9.09 37.16 0.34 -0.37 16 4 C 0.51 5.75 6.89 -10.99 -0.08 5.68 16 5 O -0.51 -8.18 13.67 5.55 0.08 -8.10 16 6 N -0.67 -6.69 5.27 -9.88 -0.05 -6.74 16 7 C 0.18 2.37 6.28 -83.72 -0.53 1.85 16 8 C -0.20 -2.29 9.96 -39.37 -0.39 -2.68 16 9 C -0.06 -0.76 10.03 -39.63 -0.40 -1.16 16 10 C -0.22 -3.52 9.04 -39.40 -0.36 -3.88 16 11 C 0.16 2.96 6.68 -39.25 -0.26 2.70 16 12 O -0.32 -6.63 10.13 -19.43 -0.20 -6.82 16 13 C 0.07 1.54 4.68 37.15 0.17 1.72 16 14 C -0.01 -0.24 4.41 -27.89 -0.12 -0.36 16 15 C -0.53 -15.06 9.66 -34.44 -0.33 -15.40 16 16 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 19 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 23 C -0.16 -2.76 8.59 -39.25 -0.34 -3.10 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.21 7.45 -51.93 -0.39 -0.18 16 29 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 2.44 8.09 -40.82 -0.33 2.11 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16 35 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 36 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 37 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 38 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.14 2.51 6.42 -52.48 -0.34 2.18 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -34.08 333.30 -7.33 -41.41 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.91 Total: -0.46 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.37 Total: -14.83 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.72 Total: -33.56 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.12 Total: -14.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.08 -7.33 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.955 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds