Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99920 * 2 1 3 5 5 O 1.21288 * 119.99873 * 359.97438 * 4 2 1 6 6 N 1.34776 * 119.99874 * 180.02562 * 4 2 1 7 7 C 1.39918 * 119.99916 * 185.26990 * 6 4 2 8 8 C 1.38933 * 120.04335 * 213.30014 * 7 6 4 9 9 C 1.38122 * 120.04244 * 180.02562 * 8 7 6 10 10 C 1.38212 * 120.12233 * 359.67556 * 9 8 7 11 11 C 1.38762 * 120.08306 * 0.59814 * 10 9 8 12 12 O 1.35902 * 120.01919 * 179.69275 * 11 10 9 13 13 C 1.42898 * 117.00103 * 359.73677 * 12 11 10 14 14 C 1.52993 * 109.47455 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47432 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00199 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00156 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46910 * 90.00356 * 19 17 15 21 21 H 1.48497 * 109.47055 * 210.00084 * 19 17 15 22 22 H 1.48494 * 109.46996 * 330.00153 * 19 17 15 23 23 C 1.38624 * 119.96030 * 359.42842 * 11 10 9 24 24 H 1.08997 * 109.47459 * 299.99811 * 1 2 3 25 25 H 1.08997 * 109.47202 * 60.00625 * 1 2 3 26 26 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47059 * 240.00143 * 2 1 3 28 28 H 1.09000 * 109.46946 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46927 * 300.00120 * 3 2 1 30 30 H 1.08997 * 109.46856 * 59.99820 * 3 2 1 31 31 H 0.96997 * 120.00199 * 5.26862 * 6 4 2 32 32 H 1.08004 * 119.97479 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.93863 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.95737 * 180.29849 * 10 9 8 35 35 H 1.09000 * 109.46962 * 299.99336 * 13 12 11 36 36 H 1.09007 * 109.47475 * 59.99125 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99541 * 14 13 12 38 38 H 1.08997 * 109.47470 * 59.99819 * 14 13 12 39 39 H 0.96999 * 120.00155 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.06124 * 180.25015 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2441 -1.1709 2.0291 6 7 3.3574 -0.8331 1.4440 7 6 3.8248 -1.5865 2.5264 8 6 4.9931 -1.2146 3.1799 9 6 5.4547 -1.9587 4.2481 10 6 4.7528 -3.0705 4.6738 11 6 3.5884 -3.4499 4.0213 12 8 2.9025 -4.5470 4.4372 13 6 3.4409 -5.2660 5.5486 14 6 2.5389 -6.4593 5.8694 15 6 3.1070 -7.2179 7.0411 16 1 4.0204 -6.8826 7.5098 17 6 2.4613 -8.3405 7.5140 18 7 2.9574 -9.0028 8.5362 19 14 0.8818 -8.9209 6.7029 20 1 1.2072 -9.8724 5.6102 21 1 0.0276 -9.5983 7.7111 22 1 0.1552 -7.7534 6.1426 23 6 3.1222 -2.7060 2.9486 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.9870 -0.3991 0.8473 32 1 5.5406 -0.3432 2.8524 33 1 6.3633 -1.6684 4.7546 34 1 5.1136 -3.6476 5.5124 35 1 4.4408 -5.6222 5.3008 36 1 3.4943 -4.6077 6.4158 37 1 1.5391 -6.1028 6.1173 38 1 2.4852 -7.1177 5.0024 39 1 2.5029 -9.7924 8.8692 40 1 2.2138 -2.9974 2.4421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055568403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -87.011769 kcal Electronic energy + Delta-G solvation = -20648.281910 eV Core-core repulsion = 17426.890455 eV Total energy + Delta-G solvation = -3221.391455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80410 -40.67006 -38.57942 -35.81816 -35.50687 -35.24891 -32.96230 -31.16484 -30.27188 -27.97842 -27.14888 -25.32862 -23.65970 -23.31933 -22.01782 -20.89446 -19.78076 -18.81912 -18.24374 -17.21824 -17.05437 -16.89768 -16.74291 -16.40876 -16.19113 -15.33176 -15.06354 -14.77296 -14.54187 -14.38200 -14.30922 -13.82360 -13.45696 -13.32456 -13.16248 -12.90030 -12.75524 -12.68003 -12.39641 -12.12976 -12.08190 -12.01044 -11.87707 -11.70514 -11.48430 -11.24715 -10.84296 -10.80230 -9.45079 -9.04433 -8.37800 -6.44251 0.20595 0.45329 1.32634 1.34496 1.47594 1.54833 1.91194 2.30466 2.37377 2.80145 2.96923 3.58507 3.87781 3.94916 4.02573 4.14025 4.16106 4.18887 4.22836 4.38957 4.42273 4.55877 4.61884 4.73492 4.76406 4.87986 4.92850 5.05554 5.07545 5.23188 5.25307 5.26791 5.32968 5.34351 5.37463 5.45363 5.51479 5.88819 6.13440 6.39133 6.48841 6.60757 7.11473 7.20964 8.77807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003373 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.100538 B = 8298.012684 C = 9350.821055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.142 4.142 4 C 0.504 3.496 5 O -0.565 6.565 6 N -0.657 5.657 7 C 0.178 3.822 8 C -0.175 4.175 9 C -0.054 4.054 10 C -0.237 4.237 11 C 0.125 3.875 12 O -0.341 6.341 13 C 0.087 3.913 14 C -0.007 4.007 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.017 3.983 18 N -0.940 5.940 19 Si 0.946 3.054 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.257 1.257 23 C -0.185 4.185 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.432 0.568 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.271 0.729 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 23.969 -21.459 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.294 3.706 5 O -0.442 6.442 6 N -0.304 5.304 7 C 0.083 3.917 8 C -0.195 4.195 9 C -0.072 4.072 10 C -0.256 4.256 11 C 0.079 3.921 12 O -0.255 6.255 13 C 0.013 3.987 14 C -0.045 4.045 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.182 4.182 18 N -0.579 5.579 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.181 1.181 23 C -0.207 4.207 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.273 0.727 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.500 23.433 -20.917 31.510 hybrid contribution -0.382 -0.857 0.330 0.994 sum 2.118 22.577 -20.588 30.628 Atomic orbital electron populations 1.21666 0.93062 1.01976 1.02751 1.21409 0.97918 0.98614 0.94560 1.21845 1.02401 0.92081 1.03652 1.21863 0.81551 0.78811 0.88370 1.90775 1.56359 1.49151 1.47934 1.43478 1.08095 1.50578 1.28273 1.17473 0.94480 0.89646 0.90124 1.21135 0.97468 1.02996 0.97882 1.21140 0.99122 0.92020 0.94916 1.21523 0.97159 1.02751 1.04185 1.19194 0.91718 0.87098 0.94090 1.86041 1.51464 1.38349 1.49671 1.22706 0.97707 0.92628 0.85701 1.19452 0.96052 0.92926 0.96036 1.21080 1.10533 1.11058 1.14688 0.93621 1.25825 1.01114 0.96111 0.95148 1.70011 1.41836 1.19561 1.26532 0.85719 0.79382 0.79227 0.78758 1.18777 1.20149 1.18090 1.20227 1.03343 0.96923 1.00162 0.93614 0.88998 0.93840 0.85389 0.90086 0.89014 0.93222 0.72746 0.81405 0.81880 0.85279 0.91836 0.92325 0.95900 0.95647 0.92005 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.48 71.98 0.61 -1.42 16 2 C -0.10 -1.23 3.27 -11.54 -0.04 -1.26 16 3 C -0.14 -0.88 9.09 71.98 0.65 -0.23 16 4 C 0.50 10.89 6.89 87.66 0.60 11.49 16 5 O -0.57 -18.88 13.67 -3.05 -0.04 -18.92 16 6 N -0.66 -11.45 5.27 -303.55 -1.60 -13.05 16 7 C 0.18 4.44 6.28 38.14 0.24 4.68 16 8 C -0.17 -3.40 9.96 22.41 0.22 -3.18 16 9 C -0.05 -1.19 10.03 22.24 0.22 -0.97 16 10 C -0.24 -7.33 9.04 22.39 0.20 -7.13 16 11 C 0.13 4.68 6.68 22.49 0.15 4.83 16 12 O -0.34 -14.94 10.13 -92.45 -0.94 -15.88 16 13 C 0.09 3.85 4.68 71.98 0.34 4.19 16 14 C -0.01 -0.37 4.41 29.85 0.13 -0.23 16 15 C -0.54 -31.63 9.66 25.60 0.25 -31.38 16 16 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 17 C 0.02 0.98 5.47 84.65 0.46 1.44 16 18 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 19 Si 0.95 45.79 27.47 68.60 1.88 47.68 16 20 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 23 C -0.19 -6.41 8.59 22.48 0.19 -6.21 16 24 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 27 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.18 7.45 -2.39 -0.02 0.16 16 29 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.43 3.34 8.09 -92.71 -0.75 2.59 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.13 4.00 6.29 -2.91 -0.02 3.98 16 35 H 0.06 2.67 7.67 -2.39 -0.02 2.65 16 36 H 0.06 2.52 7.65 -2.38 -0.02 2.50 16 37 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 38 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.11 4.41 6.42 -2.91 -0.02 4.39 16 Total: -1.00 -78.76 333.30 4.08 -74.68 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.23 Total: 9.50 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.24 Total: -25.38 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.30 Total: -71.68 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.98 Total: -34.79 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.68 kcal Total: -78.76 4.08 -74.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.327 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds