Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99661 * 269.99401 * 5 4 3 7 7 C 1.39015 * 120.00071 * 89.99837 * 5 4 3 8 8 C 1.39245 * 119.92236 * 359.72601 * 7 5 4 9 9 C 1.37109 * 120.07274 * 179.72245 * 8 7 5 10 10 C 1.39884 * 119.92200 * 0.56446 * 9 8 7 11 11 C 1.47330 * 120.07357 * 179.67825 * 10 9 8 12 12 O 1.21553 * 119.99681 * 180.02562 * 11 10 9 13 13 O 1.34779 * 120.00371 * 0.02864 * 11 10 9 14 14 C 1.34866 * 117.00382 * 179.97438 * 13 11 10 15 15 H 1.08009 * 119.99665 * 359.97438 * 14 13 11 16 16 C 1.38787 * 120.00034 * 180.02562 * 14 13 11 17 17 N 1.31420 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48487 * 109.47369 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46970 * 120.00070 * 18 16 14 21 21 H 1.48504 * 109.47029 * 239.99799 * 18 16 14 22 22 C 1.39884 * 119.85141 * 359.70866 * 10 9 8 23 23 C 1.37110 * 119.91901 * 359.97438 * 22 10 9 24 24 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 29 29 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 30 30 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 33 33 H 1.09003 * 109.47033 * 90.00622 * 6 5 4 34 34 H 1.09000 * 109.47241 * 210.00440 * 6 5 4 35 35 H 1.09000 * 109.47127 * 330.00198 * 6 5 4 36 36 H 1.07993 * 119.96351 * 359.97438 * 8 7 5 37 37 H 1.08001 * 120.03273 * 180.25092 * 9 8 7 38 38 H 0.97008 * 120.00114 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.04167 * 179.97438 * 22 10 9 40 40 H 1.08003 * 119.95877 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3031 3.5146 -1.2672 7 6 4.2894 3.4787 1.2055 8 6 4.0509 2.8224 2.4101 9 6 4.2832 3.4635 3.5996 10 6 4.7491 4.7825 3.6020 11 6 4.9931 5.4770 4.8782 12 8 5.3976 6.6232 4.8786 13 8 4.7680 4.8414 6.0452 14 6 5.0119 5.5337 7.1766 15 1 5.3716 6.5506 7.1204 16 6 4.8018 4.9392 8.4129 17 7 4.3656 3.7013 8.4812 18 14 5.1403 5.8980 9.9799 19 1 5.6207 7.2596 9.6331 20 1 3.8911 6.0022 10.7762 21 1 6.1777 5.1945 10.7764 22 6 4.9823 5.4407 2.3899 23 6 4.7541 4.7914 1.2041 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 3.3949 4.0286 -1.5821 34 1 5.1050 4.2412 -1.1363 35 1 4.5915 2.7881 -2.0269 36 1 3.6863 1.8058 2.4075 37 1 4.1018 2.9524 4.5336 38 1 4.2190 3.2856 9.3453 39 1 5.3417 6.4592 2.3882 40 1 4.9335 5.2992 0.2679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062338637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -58.759985 kcal Electronic energy + Delta-G solvation = -20781.253158 eV Core-core repulsion = 17561.086792 eV Total energy + Delta-G solvation = -3220.166366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71191 -38.61175 -36.69016 -35.03088 -34.55424 -32.09605 -31.02849 -30.10359 -29.17603 -26.34493 -25.33997 -23.88991 -21.85784 -21.67649 -21.18364 -19.67647 -17.62882 -17.60594 -16.57972 -15.77372 -15.40317 -15.01806 -14.84892 -14.33239 -14.30591 -14.24160 -13.67465 -13.56226 -13.36912 -12.96552 -12.67717 -12.63895 -12.31150 -12.08180 -11.81066 -11.55622 -11.45910 -11.39016 -11.24400 -11.16919 -10.79141 -10.44913 -10.40508 -10.35964 -9.72312 -9.56167 -8.94134 -8.64553 -8.52171 -7.14884 -6.36749 -3.99631 1.54202 1.85507 3.06231 3.17125 3.23152 3.31085 3.66083 4.02472 4.52130 4.62492 4.66204 4.74844 4.84836 4.92921 4.98357 5.20282 5.21469 5.24256 5.31453 5.35868 5.46910 5.53364 5.55413 5.59133 5.68745 5.80279 5.88174 5.92326 5.94267 6.01949 6.13612 6.33068 6.48004 6.50594 6.94457 7.09155 7.20226 7.29761 7.46938 7.61518 8.02439 8.82322 9.12879 9.96313 10.81743 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.003662 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.538552 B = 7643.952117 C = 8715.818631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.122 3.878 5 N -0.631 5.631 6 C 0.093 3.907 7 C 0.226 3.774 8 C -0.209 4.209 9 C -0.022 4.022 10 C -0.149 4.149 11 C 0.443 3.557 12 O -0.561 6.561 13 O -0.211 6.211 14 C -0.374 4.374 15 H 0.096 0.904 16 C 0.040 3.960 17 N -0.864 5.864 18 Si 0.942 3.058 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.021 4.021 23 C -0.212 4.212 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.268 0.732 39 H 0.131 0.869 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -7.585 -19.156 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.180 4.180 4 C -0.001 4.001 5 N -0.341 5.341 6 C -0.050 4.050 7 C 0.124 3.876 8 C -0.231 4.231 9 C -0.041 4.041 10 C -0.152 4.152 11 C 0.291 3.709 12 O -0.460 6.460 13 O -0.118 6.118 14 C -0.450 4.450 15 H 0.114 0.886 16 C -0.164 4.164 17 N -0.501 5.501 18 Si 0.767 3.233 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.040 4.040 23 C -0.234 4.234 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.036 -7.542 -19.140 20.964 hybrid contribution 0.083 0.416 0.718 0.834 sum -3.953 -7.125 -18.421 20.143 Atomic orbital electron populations 1.21760 0.95745 1.01536 1.01944 1.21461 0.96110 0.96470 1.02020 1.22091 0.96002 0.96993 1.02897 1.21496 0.93628 0.82311 1.02667 1.46286 1.71384 1.13260 1.03188 1.21622 1.00804 0.97532 0.85024 1.17956 0.92598 0.91439 0.85573 1.20492 1.10889 1.00944 0.90802 1.21249 0.91529 0.93091 0.98241 1.19169 1.09136 0.95310 0.91565 1.20763 0.79597 0.85301 0.85198 1.90610 1.47919 1.19247 1.88225 1.83909 1.71549 1.43450 1.12904 1.21317 1.44652 0.98405 0.80624 0.88627 1.25331 0.96403 0.96164 0.98502 1.69990 1.42346 1.12019 1.25771 0.85619 0.78233 0.79437 0.80011 1.18936 1.20207 1.20206 1.20832 0.93575 0.99326 0.90300 1.20382 1.10674 0.94178 0.98214 0.92504 0.92933 0.92797 0.92165 0.91709 0.91193 0.92007 0.90367 0.91117 0.93599 0.91180 0.91853 0.85895 0.84254 0.92180 0.85141 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.14 -1.23 5.54 -26.73 -0.15 -1.38 16 4 C 0.12 1.11 5.18 -4.04 -0.02 1.09 16 5 N -0.63 -6.99 2.99 -179.61 -0.54 -7.52 16 6 C 0.09 0.79 10.22 59.85 0.61 1.40 16 7 C 0.23 3.25 6.55 -83.85 -0.55 2.70 16 8 C -0.21 -3.27 9.16 -39.62 -0.36 -3.63 16 9 C -0.02 -0.42 9.58 -39.38 -0.38 -0.80 16 10 C -0.15 -3.21 5.88 -104.97 -0.62 -3.83 16 11 C 0.44 11.89 7.82 34.43 0.27 12.16 16 12 O -0.56 -16.13 15.58 -19.31 -0.30 -16.43 16 13 O -0.21 -6.29 8.98 -21.80 -0.20 -6.49 16 14 C -0.37 -11.39 9.65 30.94 0.30 -11.10 16 15 H 0.10 2.94 6.86 -52.48 -0.36 2.58 16 16 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 17 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 18 Si 0.94 21.70 29.55 -169.99 -5.02 16.68 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.02 -0.39 9.56 -39.38 -0.38 -0.77 16 23 C -0.21 -3.18 9.16 -39.62 -0.36 -3.54 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.74 6.18 -51.93 -0.32 0.42 16 32 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 35 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 36 H 0.12 1.64 6.12 -52.49 -0.32 1.32 16 37 H 0.14 2.84 7.60 -52.49 -0.40 2.44 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.13 2.36 7.64 -52.49 -0.40 1.96 16 40 H 0.12 1.49 6.11 -52.48 -0.32 1.17 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -34.08 337.65 -7.51 -41.59 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.78 Total: 0.39 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.52 Total: -8.49 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.22 Total: -32.35 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.50 Total: -22.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.08 -7.51 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062338637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.166 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds