Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99661 * 269.99401 * 5 4 3 7 7 C 1.39015 * 120.00071 * 89.99837 * 5 4 3 8 8 C 1.39245 * 119.92236 * 359.72601 * 7 5 4 9 9 C 1.37109 * 120.07274 * 179.72245 * 8 7 5 10 10 C 1.39884 * 119.92200 * 0.56446 * 9 8 7 11 11 C 1.47330 * 120.07357 * 179.67825 * 10 9 8 12 12 O 1.21553 * 119.99681 * 180.02562 * 11 10 9 13 13 O 1.34779 * 120.00371 * 0.02864 * 11 10 9 14 14 C 1.34866 * 117.00382 * 179.97438 * 13 11 10 15 15 H 1.08009 * 119.99665 * 359.97438 * 14 13 11 16 16 C 1.38787 * 120.00034 * 180.02562 * 14 13 11 17 17 N 1.31420 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99601 * 179.97438 * 16 14 13 19 19 H 1.48487 * 109.47369 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46970 * 120.00070 * 18 16 14 21 21 H 1.48504 * 109.47029 * 239.99799 * 18 16 14 22 22 C 1.39884 * 119.85141 * 359.70866 * 10 9 8 23 23 C 1.37110 * 119.91901 * 359.97438 * 22 10 9 24 24 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 29 29 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 30 30 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 33 33 H 1.09003 * 109.47033 * 90.00622 * 6 5 4 34 34 H 1.09000 * 109.47241 * 210.00440 * 6 5 4 35 35 H 1.09000 * 109.47127 * 330.00198 * 6 5 4 36 36 H 1.07993 * 119.96351 * 359.97438 * 8 7 5 37 37 H 1.08001 * 120.03273 * 180.25092 * 9 8 7 38 38 H 0.97008 * 120.00114 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.04167 * 179.97438 * 22 10 9 40 40 H 1.08003 * 119.95877 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3031 3.5146 -1.2672 7 6 4.2894 3.4787 1.2055 8 6 4.0509 2.8224 2.4101 9 6 4.2832 3.4635 3.5996 10 6 4.7491 4.7825 3.6020 11 6 4.9931 5.4770 4.8782 12 8 5.3976 6.6232 4.8786 13 8 4.7680 4.8414 6.0452 14 6 5.0119 5.5337 7.1766 15 1 5.3716 6.5506 7.1204 16 6 4.8018 4.9392 8.4129 17 7 4.3656 3.7013 8.4812 18 14 5.1403 5.8980 9.9799 19 1 5.6207 7.2596 9.6331 20 1 3.8911 6.0022 10.7762 21 1 6.1777 5.1945 10.7764 22 6 4.9823 5.4407 2.3899 23 6 4.7541 4.7914 1.2041 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 3.3949 4.0286 -1.5821 34 1 5.1050 4.2412 -1.1363 35 1 4.5915 2.7881 -2.0269 36 1 3.6863 1.8058 2.4075 37 1 4.1018 2.9524 4.5336 38 1 4.2190 3.2856 9.3453 39 1 5.3417 6.4592 2.3882 40 1 4.9335 5.2992 0.2679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062338637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -78.479519 kcal Electronic energy + Delta-G solvation = -20782.108261 eV Core-core repulsion = 17561.086792 eV Total energy + Delta-G solvation = -3221.021469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26590 -40.33430 -37.87998 -37.03555 -35.44634 -34.30217 -32.27724 -31.38964 -30.04854 -27.80646 -26.91576 -25.11021 -23.13957 -22.99862 -21.99680 -21.17433 -19.85115 -19.08401 -18.10634 -16.94966 -16.72327 -16.49966 -16.24877 -16.09724 -15.77267 -15.52318 -14.82392 -14.61736 -14.57587 -14.28457 -13.75535 -13.63874 -13.60219 -13.36836 -13.14822 -13.06029 -12.88458 -12.40979 -12.24518 -12.20644 -12.15318 -12.01499 -11.92757 -11.60904 -11.40338 -11.07252 -10.79686 -10.68790 -10.01631 -8.54777 -8.29904 -6.31604 0.02302 0.50200 1.33520 1.37185 1.52815 1.88003 2.12032 2.14725 2.85181 2.86351 3.10667 3.79491 3.90342 4.02889 4.04959 4.21034 4.31990 4.35068 4.44042 4.49725 4.60692 4.67595 4.69148 4.73553 4.82822 4.88835 4.96957 4.97802 5.08990 5.11409 5.14426 5.21632 5.30440 5.37807 5.44476 5.50376 5.65749 5.73776 5.83632 6.31391 6.45094 6.65993 6.90141 7.78956 8.66725 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.003662 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.538552 B = 7643.952117 C = 8715.818631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.115 3.885 5 N -0.620 5.620 6 C 0.082 3.918 7 C 0.249 3.751 8 C -0.207 4.207 9 C -0.026 4.026 10 C -0.198 4.198 11 C 0.440 3.560 12 O -0.593 6.593 13 O -0.239 6.239 14 C -0.421 4.421 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.901 5.901 18 Si 1.020 2.980 19 H -0.266 1.266 20 H -0.257 1.257 21 H -0.257 1.257 22 C -0.018 4.018 23 C -0.204 4.204 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.279 0.721 39 H 0.126 0.874 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -8.776 -21.786 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.008 4.008 5 N -0.327 5.327 6 C -0.060 4.060 7 C 0.143 3.857 8 C -0.229 4.229 9 C -0.045 4.045 10 C -0.201 4.201 11 C 0.291 3.709 12 O -0.493 6.493 13 O -0.147 6.147 14 C -0.497 4.497 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.538 5.538 18 Si 0.839 3.161 19 H -0.190 1.190 20 H -0.182 1.182 21 H -0.182 1.182 22 C -0.038 4.038 23 C -0.226 4.226 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.261 -8.779 -21.844 23.924 hybrid contribution 0.083 0.647 1.172 1.342 sum -4.178 -8.131 -20.671 22.603 Atomic orbital electron populations 1.21777 0.95941 1.01933 1.01544 1.21447 0.95930 0.95658 1.02747 1.22008 0.95642 0.97693 1.01984 1.21750 0.93801 0.81165 1.04064 1.46663 1.69138 1.13982 1.02939 1.21936 1.01609 0.98493 0.83954 1.18059 0.89965 0.91150 0.86576 1.20608 1.10442 1.01851 0.89967 1.21055 0.92216 0.92393 0.98882 1.19021 1.14437 0.96718 0.89934 1.21846 0.77667 0.85222 0.86146 1.90544 1.49316 1.20663 1.88780 1.83935 1.72836 1.44191 1.13740 1.21514 1.47680 0.98515 0.82012 0.90318 1.26580 0.94991 0.97299 1.01601 1.70074 1.42624 1.13578 1.27514 0.84545 0.79181 0.77636 0.74784 1.18998 1.18178 1.18157 1.20869 0.93370 0.99238 0.90296 1.20651 1.09429 0.94351 0.98176 0.93786 0.92481 0.92057 0.90431 0.91974 0.93582 0.91440 0.90708 0.88053 0.92503 0.90687 0.89035 0.83509 0.86719 0.91111 0.85584 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.44 5.93 30.59 0.18 -1.26 16 3 C -0.13 -1.93 5.54 30.60 0.17 -1.76 16 4 C 0.11 1.60 5.18 86.38 0.45 2.05 16 5 N -0.62 -11.10 2.99 -722.17 -2.16 -13.26 16 6 C 0.08 0.95 10.22 127.77 1.31 2.26 16 7 C 0.25 6.48 6.55 38.49 0.25 6.73 16 8 C -0.21 -6.27 9.16 22.25 0.20 -6.06 16 9 C -0.03 -1.05 9.58 22.40 0.21 -0.84 16 10 C -0.20 -9.01 5.88 -20.09 -0.12 -9.12 16 11 C 0.44 25.44 7.82 70.21 0.55 25.99 16 12 O -0.59 -36.47 15.58 19.66 0.31 -36.16 16 13 O -0.24 -15.35 8.98 10.75 0.10 -15.25 16 14 C -0.42 -27.34 9.65 67.95 0.66 -26.69 16 15 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 16 C 0.00 -0.28 5.49 84.89 0.47 0.19 16 17 N -0.90 -55.06 13.67 21.63 0.30 -54.77 16 18 Si 1.02 45.31 29.55 68.60 2.03 47.34 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.02 -0.68 9.56 22.40 0.21 -0.47 16 23 C -0.20 -5.63 9.16 22.25 0.20 -5.43 16 24 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.15 6.18 -2.39 -0.01 1.14 16 32 H 0.10 0.91 7.89 -2.39 -0.02 0.89 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.85 6.17 -2.39 -0.01 0.84 16 35 H 0.09 0.64 7.89 -2.39 -0.02 0.62 16 36 H 0.15 3.68 6.12 -2.91 -0.02 3.67 16 37 H 0.11 5.10 7.60 -2.91 -0.02 5.08 16 38 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 39 H 0.13 4.69 7.64 -2.91 -0.02 4.67 16 40 H 0.16 3.21 6.11 -2.91 -0.02 3.19 16 Total: -1.00 -79.96 337.65 7.05 -72.91 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.03 Total: 14.88 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 5.46 Total: -15.69 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.86 Total: -68.03 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: 0.40 Total: -51.41 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.96 7.05 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062338637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.573 kcal (2) G-P(sol) polarization free energy of solvation -79.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds