Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46989 * 59.99810 * 4 3 2 6 6 C 1.52999 * 109.46983 * 300.00294 * 4 3 2 7 7 N 1.46494 * 109.47245 * 180.02562 * 4 3 2 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 4 3 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 4 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 4 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.09006 * 109.47214 * 300.00040 * 1 2 3 25 25 H 1.09002 * 109.47589 * 59.99844 * 1 2 3 26 26 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47274 * 60.00192 * 3 2 1 28 28 H 1.08996 * 109.47465 * 299.99791 * 3 2 1 29 29 H 1.08991 * 109.47058 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47259 * 300.00773 * 5 4 3 31 31 H 1.09004 * 109.46457 * 60.00310 * 5 4 3 32 32 H 1.08997 * 109.47399 * 299.99843 * 6 4 3 33 33 H 1.08999 * 109.47200 * 59.99838 * 6 4 3 34 34 H 1.09002 * 109.47048 * 179.97438 * 6 4 3 35 35 H 0.97004 * 120.00039 * 359.97438 * 7 4 3 36 36 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4252 -1.2483 6 6 3.9864 0.4257 1.2502 7 7 4.1313 2.5231 0.0013 8 6 5.4717 2.6640 0.0014 9 8 6.1861 1.6806 0.0014 10 6 6.0731 4.0150 0.0014 11 6 5.2512 5.1473 0.0008 12 6 5.8065 6.4143 0.0003 13 6 7.1744 6.5760 0.0010 14 6 8.0173 5.4488 0.0016 15 6 9.4222 5.6116 0.0028 16 1 9.8603 6.5199 0.3893 17 6 10.2447 4.5957 -0.4970 18 7 9.7418 3.6679 -1.2702 19 14 12.0606 4.5643 -0.0601 20 1 12.2719 3.6802 1.1142 21 1 12.8388 4.0481 -1.2148 22 1 12.5147 5.9397 0.2677 23 6 7.4554 4.1609 0.0021 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.0740 0.3396 -1.2481 30 1 3.5440 -0.5705 -1.2483 31 1 3.6661 0.9661 -2.1385 32 1 3.6644 0.9667 2.1400 33 1 3.5431 -0.5701 1.2501 34 1 5.0730 0.3393 1.2504 35 1 3.5611 3.3078 0.0008 36 1 4.1774 5.0315 0.0007 37 1 5.1634 7.2820 0.0003 38 1 7.6005 7.5685 0.0002 39 1 10.3120 2.9639 -1.6170 40 1 8.0936 3.2897 0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066743485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -88.157930 kcal Electronic energy + Delta-G solvation = -21473.084712 eV Core-core repulsion = 18251.643556 eV Total energy + Delta-G solvation = -3221.441156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29991 -39.40674 -38.63905 -36.60417 -35.61024 -33.23420 -31.41367 -31.10633 -28.37857 -28.25037 -27.21590 -26.54416 -24.49166 -22.81460 -21.51979 -20.57002 -19.55752 -18.13859 -17.53110 -16.97955 -16.79329 -16.48648 -16.35629 -15.82073 -15.78680 -15.22152 -15.00301 -14.58564 -14.47106 -14.29400 -14.11353 -13.50965 -13.17285 -13.07200 -12.92398 -12.81743 -12.68590 -12.50008 -12.46121 -12.20004 -12.15665 -11.89286 -11.68567 -11.48615 -11.07730 -10.63278 -10.52293 -10.12664 -9.46200 -9.37113 -8.66075 -6.37394 0.41030 1.02039 1.36448 1.48169 1.51038 2.00117 2.13807 2.19754 2.80035 3.06452 3.69945 3.70996 3.86320 4.05471 4.10496 4.39968 4.43738 4.52964 4.60073 4.60335 4.64649 4.75739 4.80276 4.89431 4.91097 4.92579 4.94448 5.09628 5.19600 5.29933 5.33968 5.36465 5.52612 5.59964 5.88442 5.94631 6.06792 6.18906 6.30284 6.53901 6.73213 6.88916 6.95915 7.38031 8.30503 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027617 B = 0.004147 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.635165 B = 6750.050123 C = 7497.706327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.071 3.929 4 C 0.172 3.828 5 C -0.153 4.153 6 C -0.152 4.152 7 N -0.708 5.708 8 C 0.567 3.433 9 O -0.573 6.573 10 C -0.139 4.139 11 C -0.198 4.198 12 C -0.096 4.096 13 C -0.219 4.219 14 C 0.067 3.933 15 C -0.498 4.498 16 H 0.083 0.917 17 C 0.030 3.970 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.130 4.130 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.411 0.589 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 -3.077 2.007 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.006 4.006 4 C 0.087 3.913 5 C -0.211 4.211 6 C -0.210 4.210 7 N -0.363 5.363 8 C 0.357 3.643 9 O -0.453 6.453 10 C -0.142 4.142 11 C -0.218 4.218 12 C -0.114 4.114 13 C -0.239 4.239 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.174 1.174 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.249 0.751 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.753 -4.165 1.854 16.400 hybrid contribution 0.787 0.360 -0.059 0.867 sum -14.967 -3.805 1.795 15.546 Atomic orbital electron populations 1.22961 0.79005 1.03975 1.01073 1.87830 1.21607 1.26921 1.95628 1.22498 0.90143 0.85715 1.02244 1.20201 0.92456 0.82279 0.96359 1.22075 1.01557 1.00982 0.96501 1.22069 1.01588 1.00960 0.96420 1.45727 1.05685 1.08981 1.75896 1.18580 0.82262 0.88885 0.74583 1.90637 1.62455 1.41118 1.51124 1.19818 0.94365 0.92547 1.07453 1.20870 0.98470 0.91283 1.11174 1.20919 0.94306 0.97145 0.98986 1.21403 0.94147 0.97260 1.11073 1.17946 0.94273 0.91516 0.89819 1.19868 0.91640 1.03448 1.37764 0.89900 1.26839 1.06167 0.93583 0.91931 1.69892 1.40138 1.11888 1.23024 0.85190 0.75773 0.80009 0.78747 1.19240 1.19360 1.17393 1.21430 0.93013 0.97794 1.02816 0.92902 0.93003 0.88415 0.90955 0.91147 0.93841 0.90250 0.92495 0.92204 0.90299 0.93762 0.75088 0.84467 0.84375 0.87491 0.90353 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -8.10 9.35 -148.98 -1.39 -9.49 16 3 C 0.07 1.40 4.92 71.98 0.35 1.76 16 4 C 0.17 4.82 0.89 3.61 0.00 4.83 16 5 C -0.15 -4.72 8.26 71.98 0.59 -4.12 16 6 C -0.15 -4.57 8.25 71.98 0.59 -3.98 16 7 N -0.71 -22.12 5.06 -425.72 -2.15 -24.27 16 8 C 0.57 24.53 7.19 86.80 0.62 25.15 16 9 O -0.57 -29.05 12.54 -3.85 -0.05 -29.10 16 10 C -0.14 -6.50 5.87 -20.13 -0.12 -6.62 16 11 C -0.20 -7.64 9.55 22.70 0.22 -7.43 16 12 C -0.10 -3.74 10.01 22.17 0.22 -3.52 16 13 C -0.22 -10.23 9.78 22.77 0.22 -10.00 16 14 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 15 C -0.50 -27.29 9.05 23.47 0.21 -27.08 16 16 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 17 C 0.03 1.57 5.14 85.25 0.44 2.01 16 18 N -0.82 -46.29 10.96 21.82 0.24 -46.05 16 19 Si 0.98 40.04 29.60 68.60 2.03 42.07 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.13 -7.22 8.23 23.01 0.19 -7.03 16 24 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.68 6.16 -2.39 -0.01 1.67 16 30 H 0.08 2.19 7.68 -2.39 -0.02 2.17 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 34 H 0.04 1.66 6.17 -2.39 -0.01 1.65 16 35 H 0.41 10.09 6.49 -92.71 -0.60 9.49 16 36 H 0.14 3.90 6.38 -2.91 -0.02 3.89 16 37 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 40 H 0.10 6.10 5.75 -2.91 -0.02 6.09 16 Total: -1.00 -68.67 328.16 3.80 -64.87 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.44 Total: 32.92 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.68 Total: -30.95 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.91 Total: -70.32 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.44 Total: -38.59 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -68.67 3.80 -64.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066743485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.287 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds