Wall clock time and date at job start Mon Mar 30 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47204 * 2 1 4 4 H 1.08997 * 109.47049 * 305.00502 * 3 2 1 5 5 C 1.53007 * 109.46686 * 64.99758 * 3 2 1 6 6 C 1.50696 * 109.47183 * 184.99844 * 3 2 1 7 7 O 1.21278 * 120.00315 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99737 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99740 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.47023 * 180.02562 * 9 8 6 11 11 C 1.38305 * 119.92993 * 269.72814 * 10 9 8 12 12 C 1.38101 * 120.06623 * 179.72448 * 11 10 9 13 13 C 1.38883 * 119.92948 * 0.57091 * 12 11 10 14 14 O 1.35750 * 120.06982 * 179.68286 * 13 12 11 15 15 C 1.34829 * 116.99917 * 174.48665 * 14 13 12 16 16 H 1.07991 * 120.00151 * 5.05610 * 15 14 13 17 17 C 1.38654 * 119.99392 * 185.05606 * 15 14 13 18 18 N 1.31565 * 119.99489 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00511 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46883 * 90.00186 * 19 17 15 21 21 H 1.48496 * 109.47158 * 209.99931 * 19 17 15 22 22 H 1.48498 * 109.46829 * 330.00346 * 19 17 15 23 23 C 1.38885 * 119.86273 * 359.70296 * 13 12 11 24 24 C 1.38101 * 119.92838 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.46644 * 300.00001 * 1 2 3 26 26 H 1.08995 * 109.46633 * 59.99939 * 1 2 3 27 27 H 1.09003 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 240.00272 * 2 1 3 29 29 H 1.09005 * 109.47174 * 119.99951 * 2 1 3 30 30 H 1.08993 * 109.47579 * 300.00063 * 5 3 2 31 31 H 1.09006 * 109.46626 * 60.00549 * 5 3 2 32 32 H 1.09003 * 109.46597 * 179.97438 * 5 3 2 33 33 H 0.96996 * 120.00301 * 0.02562 * 8 6 3 34 34 H 1.08997 * 109.47663 * 300.00357 * 9 8 6 35 35 H 1.08999 * 109.47033 * 60.00494 * 9 8 6 36 36 H 1.07995 * 119.96265 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.03548 * 180.27048 * 12 11 10 38 38 H 0.97002 * 119.99643 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.03236 * 179.97438 * 23 13 12 40 40 H 1.08001 * 119.96470 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3953 -0.2046 8 7 4.2149 2.6119 -0.1458 9 6 5.6749 2.6137 -0.2667 10 6 6.1772 4.0345 -0.2665 11 6 6.3136 4.7183 -1.4610 12 6 6.7683 6.0223 -1.4637 13 6 7.0999 6.6430 -0.2663 14 8 7.5532 7.9226 -0.2662 15 6 7.7480 8.5029 0.9351 16 1 7.6231 7.9265 1.8398 17 6 8.1086 9.8397 1.0089 18 7 8.2991 10.4058 2.1811 19 14 8.3254 10.8365 -0.5560 20 1 7.0311 11.4629 -0.9271 21 1 9.3415 11.8957 -0.3314 22 1 8.7756 9.9431 -1.6535 23 6 6.9672 5.9517 0.9309 24 6 6.5066 4.6498 0.9274 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5490 2.1253 1.3970 31 1 2.0699 1.5874 2.1492 32 1 1.9990 3.1541 1.3076 33 1 3.7325 3.4510 -0.0815 34 1 6.1099 2.0748 0.5750 35 1 5.9629 2.1262 -1.1981 36 1 6.0605 4.2333 -2.3921 37 1 6.8705 6.5573 -2.3963 38 1 8.5511 11.3411 2.2327 39 1 7.2246 6.4316 1.8636 40 1 6.4036 4.1116 1.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067928206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:15 Heat of formation + Delta-G solvation = -61.019963 kcal Electronic energy + Delta-G solvation = -20530.498474 eV Core-core repulsion = 17310.234108 eV Total energy + Delta-G solvation = -3220.264366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02079 -39.24372 -37.11938 -35.58814 -34.48665 -32.49577 -30.71074 -30.37363 -29.41176 -26.26798 -25.41988 -24.43591 -22.21547 -21.78223 -20.63060 -19.80253 -18.01466 -17.54283 -17.10025 -16.06669 -15.69757 -15.08157 -14.84475 -14.43114 -14.21579 -13.99872 -13.90534 -13.72108 -13.43454 -13.06100 -12.80396 -12.65023 -12.37669 -12.29573 -12.06875 -11.85775 -11.75221 -11.49931 -11.08297 -10.94576 -10.89777 -10.85911 -10.79060 -10.24176 -9.75531 -9.50357 -8.99253 -8.96520 -8.40148 -7.49680 -6.51664 -4.18699 1.93890 2.00501 2.65658 3.15150 3.19155 3.32896 3.36189 4.15167 4.36996 4.51788 4.64587 4.70658 4.72987 5.00186 5.07012 5.11604 5.18020 5.25141 5.33062 5.36535 5.54044 5.58390 5.65691 5.70913 5.73551 5.81704 5.89049 6.01091 6.03193 6.13164 6.22742 6.43034 6.49676 6.65786 6.88145 7.10558 7.16845 7.47701 7.57673 7.69029 7.92538 8.24996 8.82887 9.43515 10.55507 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033460 B = 0.002995 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.610488 B = 9346.856417 C = 9569.595240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.096 0.904 5 C -0.146 4.146 6 C 0.512 3.488 7 O -0.548 6.548 8 N -0.722 5.722 9 C 0.177 3.823 10 C -0.206 4.206 11 C -0.057 4.057 12 C -0.195 4.195 13 C 0.166 3.834 14 O -0.213 6.213 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.065 3.935 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.053 4.053 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.135 0.865 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 -14.071 -4.235 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.114 0.886 5 C -0.204 4.204 6 C 0.298 3.702 7 O -0.426 6.426 8 N -0.373 5.373 9 C 0.054 3.946 10 C -0.207 4.207 11 C -0.075 4.075 12 C -0.214 4.214 13 C 0.113 3.887 14 O -0.117 6.117 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.513 5.513 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.071 4.071 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.845 -14.445 -4.342 19.178 hybrid contribution -0.004 1.073 -0.339 1.125 sum -11.849 -13.372 -4.682 18.470 Atomic orbital electron populations 1.21851 0.95600 1.01789 1.01883 1.21333 0.95201 0.94317 1.03413 1.21366 0.92140 0.99276 1.00575 0.88631 1.21837 1.02235 1.00478 0.95837 1.20709 0.89909 0.83695 0.75843 1.90677 1.70438 1.31550 1.49957 1.46351 1.08172 1.08617 1.74209 1.19990 0.79022 0.93836 1.01717 1.19293 1.11649 0.95948 0.93833 1.20536 0.97117 0.93183 0.96713 1.20214 1.09106 0.95814 0.96284 1.19184 0.91042 0.85004 0.93451 1.83575 1.72438 1.22239 1.33437 1.20787 1.48237 0.95133 0.82568 0.87498 1.24493 0.95552 0.95732 0.98170 1.69647 1.44591 1.13613 1.23400 0.86170 0.78522 0.79479 0.82689 1.19798 1.20671 1.18315 1.21283 1.08530 0.95577 0.98900 1.20698 0.95870 0.93995 0.96569 0.92411 0.92737 0.92566 0.91224 0.91380 0.91256 0.92069 0.91943 0.76378 0.91535 0.91544 0.86791 0.86361 0.90893 0.84786 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.10 -0.95 4.75 -26.73 -0.13 -1.07 16 3 C -0.11 -1.02 2.73 -91.77 -0.25 -1.27 16 4 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.14 8.85 37.16 0.33 -0.81 16 6 C 0.51 6.41 7.15 -10.99 -0.08 6.33 16 7 O -0.55 -8.90 15.92 5.56 0.09 -8.81 16 8 N -0.72 -8.60 5.44 -61.47 -0.33 -8.93 16 9 C 0.18 2.38 5.80 -5.19 -0.03 2.35 16 10 C -0.21 -3.13 5.25 -104.57 -0.55 -3.68 16 11 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 12 C -0.19 -3.60 9.99 -39.39 -0.39 -4.00 16 13 C 0.17 3.63 6.65 -39.10 -0.26 3.37 16 14 O -0.21 -5.39 8.59 0.05 0.00 -5.38 16 15 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 16 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -24.62 13.96 55.48 0.77 -23.84 16 19 Si 0.91 21.01 28.62 -169.99 -4.86 16.14 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.22 -4.53 9.17 -39.39 -0.36 -4.89 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.71 7.95 -51.93 -0.41 0.29 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 33 H 0.40 4.21 7.88 -40.82 -0.32 3.89 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -29.75 335.64 -6.94 -36.70 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.75 Total: 4.65 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.92 Total: -15.58 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.44 Total: -32.77 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.75 -6.94 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.322 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds