Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47204 * 2 1 4 4 H 1.08997 * 109.47049 * 305.00502 * 3 2 1 5 5 C 1.53007 * 109.46686 * 64.99758 * 3 2 1 6 6 C 1.50696 * 109.47183 * 184.99844 * 3 2 1 7 7 O 1.21278 * 120.00315 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99737 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99740 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.47023 * 180.02562 * 9 8 6 11 11 C 1.38305 * 119.92993 * 269.72814 * 10 9 8 12 12 C 1.38101 * 120.06623 * 179.72448 * 11 10 9 13 13 C 1.38883 * 119.92948 * 0.57091 * 12 11 10 14 14 O 1.35750 * 120.06982 * 179.68286 * 13 12 11 15 15 C 1.34829 * 116.99917 * 174.48665 * 14 13 12 16 16 H 1.07991 * 120.00151 * 5.05610 * 15 14 13 17 17 C 1.38654 * 119.99392 * 185.05606 * 15 14 13 18 18 N 1.31565 * 119.99489 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00511 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46883 * 90.00186 * 19 17 15 21 21 H 1.48496 * 109.47158 * 209.99931 * 19 17 15 22 22 H 1.48498 * 109.46829 * 330.00346 * 19 17 15 23 23 C 1.38885 * 119.86273 * 359.70296 * 13 12 11 24 24 C 1.38101 * 119.92838 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.46644 * 300.00001 * 1 2 3 26 26 H 1.08995 * 109.46633 * 59.99939 * 1 2 3 27 27 H 1.09003 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 240.00272 * 2 1 3 29 29 H 1.09005 * 109.47174 * 119.99951 * 2 1 3 30 30 H 1.08993 * 109.47579 * 300.00063 * 5 3 2 31 31 H 1.09006 * 109.46626 * 60.00549 * 5 3 2 32 32 H 1.09003 * 109.46597 * 179.97438 * 5 3 2 33 33 H 0.96996 * 120.00301 * 0.02562 * 8 6 3 34 34 H 1.08997 * 109.47663 * 300.00357 * 9 8 6 35 35 H 1.08999 * 109.47033 * 60.00494 * 9 8 6 36 36 H 1.07995 * 119.96265 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.03548 * 180.27048 * 12 11 10 38 38 H 0.97002 * 119.99643 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.03236 * 179.97438 * 23 13 12 40 40 H 1.08001 * 119.96470 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3953 -0.2046 8 7 4.2149 2.6119 -0.1458 9 6 5.6749 2.6137 -0.2667 10 6 6.1772 4.0345 -0.2665 11 6 6.3136 4.7183 -1.4610 12 6 6.7683 6.0223 -1.4637 13 6 7.0999 6.6430 -0.2663 14 8 7.5532 7.9226 -0.2662 15 6 7.7480 8.5029 0.9351 16 1 7.6231 7.9265 1.8398 17 6 8.1086 9.8397 1.0089 18 7 8.2991 10.4058 2.1811 19 14 8.3254 10.8365 -0.5560 20 1 7.0311 11.4629 -0.9271 21 1 9.3415 11.8957 -0.3314 22 1 8.7756 9.9431 -1.6535 23 6 6.9672 5.9517 0.9309 24 6 6.5066 4.6498 0.9274 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5490 2.1253 1.3970 31 1 2.0699 1.5874 2.1492 32 1 1.9990 3.1541 1.3076 33 1 3.7325 3.4510 -0.0815 34 1 6.1099 2.0748 0.5750 35 1 5.9629 2.1262 -1.1981 36 1 6.0605 4.2333 -2.3921 37 1 6.8705 6.5573 -2.3963 38 1 8.5511 11.3411 2.2327 39 1 7.2246 6.4316 1.8636 40 1 6.4036 4.1116 1.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067928206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = -79.189751 kcal Electronic energy + Delta-G solvation = -20531.286375 eV Core-core repulsion = 17310.234108 eV Total energy + Delta-G solvation = -3221.052267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17448 -40.71347 -38.65985 -36.38185 -35.68403 -34.44976 -31.95077 -31.76612 -30.32681 -27.80201 -26.53057 -25.63613 -23.73262 -22.70385 -22.02735 -20.71289 -19.85006 -19.15609 -18.18823 -17.11660 -16.80711 -16.51688 -16.13069 -15.79274 -15.67612 -15.40567 -15.23578 -14.80333 -14.43482 -14.38862 -14.26865 -14.06837 -13.68019 -13.27310 -13.13695 -12.93940 -12.61940 -12.52453 -12.50714 -12.45389 -12.32958 -11.94782 -11.68160 -11.56398 -11.31537 -10.95700 -10.74570 -10.06339 -9.84973 -9.10347 -8.51528 -6.24661 0.47891 0.53057 1.32373 1.35525 1.52158 1.67594 2.27152 2.30171 2.79238 3.04432 3.13659 3.74208 3.82721 3.93680 3.98528 4.02989 4.12594 4.41415 4.43593 4.52750 4.55001 4.63516 4.71392 4.77217 4.80146 4.94068 4.99261 5.05988 5.14147 5.20612 5.23353 5.32462 5.38286 5.45341 5.52852 5.53265 5.69339 5.77576 5.87082 6.17752 6.60080 6.82612 7.27389 7.55379 8.59773 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033460 B = 0.002995 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.610488 B = 9346.856417 C = 9569.595240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.106 4.106 4 H 0.118 0.882 5 C -0.144 4.144 6 C 0.511 3.489 7 O -0.588 6.588 8 N -0.715 5.715 9 C 0.181 3.819 10 C -0.174 4.174 11 C -0.046 4.046 12 C -0.191 4.191 13 C 0.129 3.871 14 O -0.241 6.241 15 C -0.400 4.400 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.237 4.237 24 C -0.051 4.051 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.285 0.715 39 H 0.109 0.891 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -15.559 -6.199 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.127 4.127 4 H 0.135 0.865 5 C -0.202 4.202 6 C 0.299 3.701 7 O -0.468 6.468 8 N -0.367 5.367 9 C 0.058 3.942 10 C -0.175 4.175 11 C -0.064 4.064 12 C -0.210 4.210 13 C 0.079 3.921 14 O -0.149 6.149 15 C -0.476 4.476 16 H 0.100 0.900 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.257 4.257 24 C -0.069 4.069 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.171 0.829 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.768 -15.962 -6.312 22.004 hybrid contribution 0.458 1.133 0.245 1.246 sum -13.310 -14.829 -6.067 20.829 Atomic orbital electron populations 1.21820 0.93621 1.02394 1.02793 1.21314 0.96858 0.94060 1.01994 1.21405 0.89434 0.99709 1.02138 0.86454 1.21848 1.03488 1.00266 0.94554 1.21318 0.91284 0.82912 0.74598 1.90668 1.71501 1.32927 1.51754 1.46208 1.07436 1.09160 1.73901 1.19895 0.80063 0.92029 1.02232 1.19544 1.08428 0.96419 0.93086 1.20944 0.95150 0.91889 0.98402 1.20520 1.08125 0.96831 0.95528 1.19740 0.92654 0.84379 0.95294 1.83524 1.75356 1.24018 1.31953 1.20711 1.48541 0.95495 0.82885 0.89969 1.25293 0.95554 0.96712 1.01245 1.69732 1.47001 1.14235 1.25258 0.85216 0.78928 0.77969 0.78620 1.18929 1.19406 1.18618 1.21265 1.09607 0.97072 0.97724 1.20905 0.94980 0.92606 0.98425 0.91454 0.91791 0.92242 0.92728 0.92834 0.89323 0.93093 0.91501 0.75232 0.91696 0.90723 0.82880 0.85033 0.90527 0.87264 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 71.98 0.70 -0.93 16 2 C -0.10 -1.69 4.75 30.60 0.15 -1.54 16 3 C -0.11 -1.62 2.73 -11.54 -0.03 -1.65 16 4 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.14 -1.82 8.85 71.98 0.64 -1.18 16 6 C 0.51 11.51 7.15 87.66 0.63 12.13 16 7 O -0.59 -18.14 15.92 -3.02 -0.05 -18.19 16 8 N -0.72 -14.65 5.44 -466.80 -2.54 -17.19 16 9 C 0.18 4.24 5.80 85.63 0.50 4.73 16 10 C -0.17 -4.71 5.25 -19.83 -0.10 -4.82 16 11 C -0.05 -1.25 9.69 22.25 0.22 -1.03 16 12 C -0.19 -6.67 9.99 22.39 0.22 -6.44 16 13 C 0.13 5.68 6.65 22.58 0.15 5.83 16 14 O -0.24 -12.59 8.59 -22.74 -0.20 -12.79 16 15 C -0.40 -22.89 9.95 67.92 0.68 -22.21 16 16 H 0.08 4.92 5.44 -2.91 -0.02 4.91 16 17 C 0.01 0.60 5.49 84.83 0.47 1.07 16 18 N -0.92 -54.05 13.96 21.61 0.30 -53.75 16 19 Si 0.97 44.20 28.62 68.60 1.96 46.16 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 23 C -0.24 -9.79 9.17 22.39 0.21 -9.59 16 24 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 25 H 0.07 0.61 6.56 -2.39 -0.02 0.60 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 0.80 6.56 -2.39 -0.02 0.79 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 33 H 0.41 7.05 7.88 -92.71 -0.73 6.32 16 34 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 38 H 0.29 15.33 8.31 -92.71 -0.77 14.55 16 39 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 40 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.61 335.64 4.41 -63.20 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.31 Total: 19.58 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 4.62 Total: -27.02 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -2.24 Total: -70.94 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.24 Total: -30.98 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.96 Total: 46.16 kcal Total: -67.61 4.41 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.993 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds