Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47105 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99960 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99776 * 180.02562 * 5 4 3 8 8 C 1.46508 * 120.00011 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47103 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.93247 * 90.00118 * 9 8 7 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08996 * 109.47097 * 60.00099 * 1 2 3 25 25 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46894 * 300.00092 * 1 2 3 27 27 H 1.09003 * 109.46894 * 239.99908 * 2 1 3 28 28 H 1.08994 * 109.47609 * 120.00009 * 2 1 3 29 29 H 1.08998 * 109.47318 * 59.99662 * 3 2 1 30 30 H 1.09005 * 109.46796 * 299.99942 * 3 2 1 31 31 H 1.08998 * 109.47672 * 59.99342 * 4 3 2 32 32 H 1.09005 * 109.46733 * 299.99443 * 4 3 2 33 33 H 0.97001 * 120.00514 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.46632 * 59.99915 * 8 7 5 35 35 H 1.08996 * 109.47144 * 299.99646 * 8 7 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2843 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 5.8858 4.4909 -0.0009 9 6 7.3927 4.4908 -0.0014 10 6 8.0824 4.4910 -1.2002 11 6 9.4634 4.4915 -1.2040 12 6 10.1597 4.4913 -0.0023 13 8 11.5172 4.4923 -0.0028 14 6 12.1287 4.6094 -1.1987 15 1 11.5435 4.6147 -2.1063 16 6 13.5092 4.7230 -1.2632 17 7 14.2221 4.7169 -0.1576 18 14 14.3565 4.8860 -2.9200 19 1 14.4700 6.3225 -3.2788 20 1 15.7128 4.2861 -2.8435 21 1 13.5601 4.1788 -3.9550 22 6 9.4643 4.4847 1.1998 23 6 8.0833 4.4900 1.1969 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 6.0278 2.3723 -0.0016 34 1 5.5231 5.0043 0.8895 35 1 5.5219 5.0049 -0.8904 36 1 7.5404 4.4916 -2.1343 37 1 10.0013 4.4921 -2.1405 38 1 15.1878 4.7960 -0.2028 39 1 10.0029 4.4800 2.1358 40 1 7.5419 4.4894 2.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067928476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -67.429997 kcal Electronic energy + Delta-G solvation = -20045.814941 eV Core-core repulsion = 16825.272615 eV Total energy + Delta-G solvation = -3220.542326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79160 -39.04755 -36.93040 -35.57975 -34.37192 -32.39500 -31.06796 -30.29731 -29.62712 -26.16116 -25.21553 -23.91391 -22.07595 -21.36868 -20.64626 -20.23525 -18.09689 -17.29210 -16.82276 -16.19038 -15.88335 -15.10163 -14.64542 -14.57725 -14.33128 -13.94051 -13.82699 -13.64689 -13.50258 -13.21152 -12.80821 -12.62459 -12.53067 -12.08146 -11.70950 -11.52112 -11.50212 -11.38086 -11.23963 -10.97792 -10.81625 -10.80868 -10.71699 -10.50178 -9.82719 -9.44898 -8.95891 -8.92385 -8.30820 -7.34469 -6.54612 -4.13539 2.05369 2.10758 2.68554 3.06682 3.08344 3.13011 3.40951 3.88950 4.45621 4.63305 4.66301 4.70244 4.99073 5.01790 5.06811 5.15204 5.22722 5.27736 5.40695 5.45807 5.57213 5.59199 5.64442 5.68391 5.78685 5.87554 5.93277 6.01888 6.10184 6.14124 6.32842 6.52135 6.58375 6.78336 6.93742 7.12165 7.25296 7.33171 7.60789 7.70005 7.90023 8.28203 8.90689 9.58707 10.62877 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036245 B = 0.002570 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.328730 B =10891.689359 C =11134.118643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.507 3.493 6 O -0.550 6.550 7 N -0.724 5.724 8 C 0.178 3.822 9 C -0.215 4.215 10 C -0.051 4.051 11 C -0.237 4.237 12 C 0.160 3.840 13 O -0.173 6.173 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.195 4.195 23 C -0.055 4.055 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 -7.534 -0.634 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.182 4.182 5 C 0.293 3.707 6 O -0.428 6.428 7 N -0.375 5.375 8 C 0.056 3.944 9 C -0.216 4.216 10 C -0.070 4.070 11 C -0.256 4.256 12 C 0.105 3.895 13 O -0.076 6.076 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.214 4.214 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.057 -6.856 -0.385 19.318 hybrid contribution 0.908 -0.243 -0.876 1.285 sum -17.149 -7.099 -1.262 18.603 Atomic orbital electron populations 1.21760 0.95790 1.01450 1.01998 1.21558 0.96066 0.96723 1.01996 1.21364 0.92870 0.96432 1.03549 1.21716 0.98003 0.94177 1.04352 1.20765 0.82352 0.91628 0.75931 1.90682 1.55443 1.46645 1.50060 1.46401 1.06775 1.09636 1.74720 1.19965 0.90541 0.82195 1.01718 1.19217 0.93263 1.15426 0.93696 1.20641 0.93553 0.96369 0.96433 1.21162 0.94107 1.11848 0.98505 1.19441 0.84917 0.91800 0.93309 1.83977 1.12899 1.77535 1.33161 1.21356 0.90205 1.52362 0.83046 0.88918 1.25327 0.95426 0.96327 0.99420 1.70033 1.06952 1.45232 1.27105 0.85688 0.78757 0.78898 0.79965 1.19780 1.20183 1.19142 1.20215 0.93359 1.11568 0.96307 1.20532 0.93014 0.97225 0.96584 0.92686 0.92849 0.92689 0.91994 0.91990 0.91277 0.91291 0.89009 0.89009 0.76396 0.91642 0.91682 0.87422 0.85409 0.91863 0.86362 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.10 -0.93 4.50 -26.73 -0.12 -1.05 16 4 C -0.14 -1.24 5.70 -27.88 -0.16 -1.40 16 5 C 0.51 6.37 7.83 -10.99 -0.09 6.28 16 6 O -0.55 -9.01 15.98 5.56 0.09 -8.92 16 7 N -0.72 -8.80 5.55 -61.47 -0.34 -9.14 16 8 C 0.18 2.49 5.80 -5.19 -0.03 2.46 16 9 C -0.21 -3.42 5.25 -104.58 -0.55 -3.97 16 10 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 11 C -0.24 -4.88 9.17 -39.39 -0.36 -5.24 16 12 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 13 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 14 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 18 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.20 -3.91 9.99 -39.39 -0.39 -4.30 16 23 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.25 8.46 -40.82 -0.35 3.90 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -30.90 342.08 -7.64 -38.54 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.96 Total: 5.45 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.32 Total: -17.41 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.42 Total: -32.96 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.90 -7.64 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.891 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds