Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47105 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99960 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99776 * 180.02562 * 5 4 3 8 8 C 1.46508 * 120.00011 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47103 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.93247 * 90.00118 * 9 8 7 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08996 * 109.47097 * 60.00099 * 1 2 3 25 25 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46894 * 300.00092 * 1 2 3 27 27 H 1.09003 * 109.46894 * 239.99908 * 2 1 3 28 28 H 1.08994 * 109.47609 * 120.00009 * 2 1 3 29 29 H 1.08998 * 109.47318 * 59.99662 * 3 2 1 30 30 H 1.09005 * 109.46796 * 299.99942 * 3 2 1 31 31 H 1.08998 * 109.47672 * 59.99342 * 4 3 2 32 32 H 1.09005 * 109.46733 * 299.99443 * 4 3 2 33 33 H 0.97001 * 120.00514 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.46632 * 59.99915 * 8 7 5 35 35 H 1.08996 * 109.47144 * 299.99646 * 8 7 5 36 36 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 37 37 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 38 38 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 40 40 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2843 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 5.8858 4.4909 -0.0009 9 6 7.3927 4.4908 -0.0014 10 6 8.0824 4.4910 -1.2002 11 6 9.4634 4.4915 -1.2040 12 6 10.1597 4.4913 -0.0023 13 8 11.5172 4.4923 -0.0028 14 6 12.1287 4.6094 -1.1987 15 1 11.5435 4.6147 -2.1063 16 6 13.5092 4.7230 -1.2632 17 7 14.2221 4.7169 -0.1576 18 14 14.3565 4.8860 -2.9200 19 1 14.4700 6.3225 -3.2788 20 1 15.7128 4.2861 -2.8435 21 1 13.5601 4.1788 -3.9550 22 6 9.4643 4.4847 1.1998 23 6 8.0833 4.4900 1.1969 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 6.0278 2.3723 -0.0016 34 1 5.5231 5.0043 0.8895 35 1 5.5219 5.0049 -0.8904 36 1 7.5404 4.4916 -2.1343 37 1 10.0013 4.4921 -2.1405 38 1 15.1878 4.7960 -0.2028 39 1 10.0029 4.4800 2.1358 40 1 7.5419 4.4894 2.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067928476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -86.622707 kcal Electronic energy + Delta-G solvation = -20046.647199 eV Core-core repulsion = 16825.272615 eV Total energy + Delta-G solvation = -3221.374584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02705 -40.51373 -38.52599 -36.28583 -35.57743 -34.27957 -32.04858 -31.81788 -30.79452 -27.74081 -26.63320 -24.87578 -23.65586 -22.22118 -21.94133 -21.20555 -19.87835 -18.90873 -17.99240 -17.02071 -16.98421 -16.46670 -16.29966 -15.78581 -15.65087 -15.52857 -15.10958 -14.69917 -14.50578 -14.38348 -14.30455 -13.86579 -13.58799 -13.19827 -13.19096 -13.04226 -12.56761 -12.37141 -12.27460 -12.15911 -12.11539 -12.03280 -11.83224 -11.41924 -11.21274 -10.94588 -10.75512 -10.04171 -9.82018 -9.01409 -8.48785 -6.16991 0.54038 0.56580 1.35766 1.44150 1.52739 1.71309 2.16746 2.34834 2.85948 3.16287 3.48438 3.81369 3.92640 3.99056 4.01614 4.09941 4.16525 4.40447 4.43525 4.51089 4.55888 4.68655 4.72568 4.79459 4.85882 4.97790 5.02786 5.04518 5.13702 5.14389 5.25615 5.30915 5.41959 5.46224 5.51861 5.54903 5.68274 5.74220 6.00854 6.14983 6.63791 6.96002 7.31249 7.75132 8.73961 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036245 B = 0.002570 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.328730 B =10891.689359 C =11134.118643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.506 3.494 6 O -0.591 6.591 7 N -0.718 5.718 8 C 0.183 3.817 9 C -0.182 4.182 10 C -0.046 4.046 11 C -0.243 4.243 12 C 0.122 3.878 13 O -0.229 6.229 14 C -0.414 4.414 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.918 5.918 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.204 4.204 23 C -0.044 4.044 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.412 0.588 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.351 -8.637 -1.617 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.175 4.175 5 C 0.294 3.706 6 O -0.472 6.472 7 N -0.370 5.370 8 C 0.060 3.940 9 C -0.183 4.183 10 C -0.065 4.065 11 C -0.263 4.263 12 C 0.071 3.929 13 O -0.135 6.135 14 C -0.490 4.490 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.556 5.556 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.223 4.223 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.528 -7.984 -1.367 22.069 hybrid contribution 1.241 0.094 -0.467 1.329 sum -19.287 -7.891 -1.833 20.919 Atomic orbital electron populations 1.21786 0.95829 1.02018 1.01637 1.21532 0.96057 0.95355 1.02931 1.21332 0.93234 0.97468 1.02035 1.21758 0.97534 0.91687 1.06479 1.21417 0.81791 0.92798 0.74579 1.90675 1.56375 1.48253 1.51906 1.46246 1.07131 1.09071 1.74507 1.19849 0.88475 0.83532 1.02182 1.19501 0.94526 1.11335 0.92924 1.20935 0.92142 0.95044 0.98368 1.21248 0.95575 1.12045 0.97389 1.19997 0.84087 0.93455 0.95379 1.83948 1.15095 1.80811 1.33632 1.21829 0.90949 1.52564 0.83610 0.87897 1.26592 0.95922 0.95834 1.03686 1.70176 1.07233 1.48372 1.29835 0.84589 0.77501 0.79222 0.74943 1.18971 1.19658 1.17519 1.20451 0.94825 1.11657 0.95410 1.20876 0.91569 0.95323 0.98498 0.93103 0.91807 0.93086 0.91031 0.90995 0.92837 0.92893 0.86779 0.86719 0.75136 0.91231 0.91481 0.84364 0.86155 0.91795 0.86642 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.36 5.93 30.59 0.18 -1.18 16 3 C -0.10 -1.62 4.50 30.60 0.14 -1.48 16 4 C -0.14 -1.87 5.70 29.85 0.17 -1.70 16 5 C 0.51 11.17 7.83 87.66 0.69 11.86 16 6 O -0.59 -18.21 15.98 -3.02 -0.05 -18.26 16 7 N -0.72 -14.73 5.55 -466.80 -2.59 -17.32 16 8 C 0.18 4.42 5.80 85.63 0.50 4.92 16 9 C -0.18 -5.17 5.25 -19.84 -0.10 -5.28 16 10 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 11 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 12 C 0.12 5.77 6.65 22.58 0.15 5.92 16 13 O -0.23 -13.33 9.76 -22.72 -0.22 -13.55 16 14 C -0.41 -23.37 9.49 67.92 0.64 -22.73 16 15 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 16 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 17 N -0.92 -55.28 13.67 21.62 0.30 -54.98 16 18 Si 1.02 41.79 29.55 68.60 2.03 43.81 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 22 C -0.20 -8.14 9.99 22.39 0.22 -7.91 16 23 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.05 0.99 8.10 -2.38 -0.02 0.98 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.41 6.95 8.46 -92.71 -0.78 6.17 16 34 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.07 1.67 8.08 -2.39 -0.02 1.66 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -71.52 342.08 4.12 -67.41 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.25 Total: 24.47 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.40 Total: -31.57 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.29 Total: -72.30 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.27 Total: -31.81 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -71.52 4.12 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067928476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.217 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds