Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47281 * 2 1 4 4 C 1.52997 * 109.46823 * 60.00076 * 3 2 1 5 5 O 1.42895 * 109.47053 * 300.00219 * 3 2 1 6 6 C 1.52998 * 109.47083 * 179.97438 * 3 2 1 7 7 N 1.46498 * 109.47217 * 185.00082 * 6 3 2 8 8 C 1.34775 * 120.00628 * 180.02562 * 7 6 3 9 9 O 1.21553 * 119.99291 * 359.97438 * 8 7 6 10 10 C 1.47877 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.39916 * 120.02541 * 359.72273 * 10 8 7 12 12 C 1.38331 * 120.35819 * 179.78873 * 11 10 8 13 13 C 1.37754 * 120.41160 * 0.46128 * 12 11 10 14 14 C 1.40754 * 120.04047 * 359.79981 * 13 12 11 15 15 C 1.41435 * 120.18031 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99528 * 334.92179 * 15 14 13 17 17 C 1.39934 * 120.00257 * 154.91780 * 15 14 13 18 18 N 1.30829 * 119.99997 * 342.59321 * 17 15 14 19 19 Si 1.86797 * 120.00138 * 162.58919 * 17 15 14 20 20 H 1.48500 * 109.47150 * 60.00038 * 19 17 15 21 21 H 1.48496 * 109.47422 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47295 * 300.00229 * 19 17 15 23 23 C 1.39002 * 120.02390 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.47331 * 60.00058 * 1 2 3 25 25 H 1.09006 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47548 * 299.99823 * 1 2 3 27 27 H 1.09010 * 109.47480 * 240.00018 * 2 1 3 28 28 H 1.09004 * 109.47466 * 120.00474 * 2 1 3 29 29 H 1.08992 * 109.47133 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.46987 * 300.00017 * 4 3 2 31 31 H 1.09006 * 109.47403 * 59.99835 * 4 3 2 32 32 H 0.96704 * 113.99666 * 299.99427 * 5 3 2 33 33 H 1.08995 * 109.47537 * 305.00196 * 6 3 2 34 34 H 1.09005 * 109.46716 * 65.00381 * 6 3 2 35 35 H 0.97004 * 119.99355 * 0.02562 * 7 6 3 36 36 H 1.07996 * 119.82172 * 0.02562 * 11 10 8 37 37 H 1.08003 * 119.79956 * 180.23551 * 12 11 10 38 38 H 1.07999 * 119.98313 * 179.76542 * 13 12 11 39 39 H 0.97000 * 120.00366 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.20197 * 359.96393 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5700 1.4425 0.0006 7 7 4.0583 2.8184 0.1210 8 6 5.3833 3.0639 0.1425 9 8 6.1732 2.1434 0.0625 10 6 5.8762 4.4527 0.2646 11 6 4.9674 5.5130 0.3521 12 6 5.4209 6.8145 0.4709 13 6 6.7718 7.0828 0.4950 14 6 7.7011 6.0296 0.4027 15 6 9.0888 6.3018 0.4266 16 1 9.4549 7.2683 0.1133 17 6 9.9874 5.3188 0.8561 18 7 9.5556 4.2942 1.5456 19 14 11.8033 5.4694 0.4451 20 1 12.3402 6.7255 1.0277 21 1 12.5367 4.3082 1.0097 22 1 11.9767 5.4942 -1.0296 23 6 7.2427 4.7063 0.2874 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8937 3.1912 1.2495 30 1 0.4399 2.1637 1.2492 31 1 1.8933 1.6498 2.1393 32 1 1.8490 1.7126 -1.9979 33 1 3.9330 0.8532 0.8426 34 1 3.9336 1.0081 -0.9306 35 1 3.4279 3.5529 0.1853 36 1 3.9062 5.3139 0.3305 37 1 4.7114 7.6257 0.5415 38 1 7.1182 8.1018 0.5841 39 1 10.1783 3.6126 1.8431 40 1 7.9478 3.8913 0.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075224474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -85.710780 kcal Electronic energy + Delta-G solvation = -21250.001662 eV Core-core repulsion = 18028.666622 eV Total energy + Delta-G solvation = -3221.335040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.64268 -38.37953 -36.89873 -34.06559 -33.67040 -33.21993 -30.45718 -29.46264 -29.28501 -27.00496 -25.27055 -23.81779 -21.91256 -20.92010 -20.41232 -19.46841 -17.84174 -16.81101 -16.09923 -15.69340 -15.39661 -15.03321 -14.84426 -14.53730 -14.36672 -13.65500 -13.59864 -13.16912 -12.67762 -12.57198 -12.47834 -12.33236 -12.30124 -12.17593 -11.77781 -11.62181 -11.17836 -11.14096 -11.06559 -10.75436 -10.67517 -10.49675 -10.10438 -10.01777 -9.67510 -9.19945 -8.99978 -8.64007 -7.61178 -7.50260 -6.78460 -4.40265 2.22798 2.83518 3.08187 3.09976 3.17657 3.62488 3.88020 3.93253 4.14284 4.51921 4.64256 4.65191 4.69849 5.08376 5.24069 5.38193 5.56881 5.60999 5.62831 5.67065 5.72852 5.77657 5.85126 5.93395 6.04819 6.10911 6.16934 6.30056 6.73287 6.87306 7.00135 7.03435 7.22628 7.39720 7.50652 7.71912 7.77812 7.94154 8.11964 8.20988 8.51803 8.81553 8.84862 8.97266 10.16393 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.003836 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.485824 B = 7296.597232 C = 7950.493988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.120 3.880 4 C -0.143 4.143 5 O -0.554 6.554 6 C 0.097 3.903 7 N -0.730 5.730 8 C 0.562 3.438 9 O -0.549 6.549 10 C -0.128 4.128 11 C -0.216 4.216 12 C -0.098 4.098 13 C -0.211 4.211 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.784 5.784 19 Si 0.911 3.089 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.092 4.092 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.376 0.624 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 -6.340 -1.892 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.200 4.200 5 O -0.360 6.360 6 C -0.028 4.028 7 N -0.385 5.385 8 C 0.353 3.647 9 O -0.428 6.428 10 C -0.131 4.131 11 C -0.236 4.236 12 C -0.116 4.116 13 C -0.231 4.231 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.112 4.112 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.224 0.776 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.987 -6.848 -1.357 14.744 hybrid contribution 0.776 -0.073 -0.431 0.890 sum -12.211 -6.921 -1.788 14.150 Atomic orbital electron populations 1.21729 0.94862 1.01309 1.02648 1.22131 0.97281 0.96030 1.03080 1.21472 0.91306 0.92065 0.87243 1.21808 1.01933 1.01216 0.95014 1.86550 1.76686 1.57165 1.15583 1.21903 0.93232 0.85241 1.02402 1.45898 1.07613 1.08132 1.76866 1.18873 0.81184 0.89916 0.74721 1.90689 1.55516 1.46430 1.50160 1.19469 0.95187 0.90286 1.08202 1.20355 0.96140 0.92773 1.14362 1.20439 0.95256 0.95064 1.00869 1.21108 0.92588 0.98125 1.11309 1.17595 0.93304 0.90807 0.88661 1.19551 0.90816 0.99892 1.38769 0.90125 1.25959 1.01837 0.94241 0.92535 1.69783 1.37930 1.09083 1.24085 0.86320 0.81369 0.78703 0.80089 1.18981 1.20242 1.18744 1.21630 0.92402 0.98076 0.99080 0.92043 0.92946 0.92335 0.91450 0.90760 0.91606 0.91346 0.90908 0.77613 0.91101 0.91765 0.76043 0.89242 0.88883 0.88609 0.90421 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.41 37.15 0.35 -0.80 16 2 C -0.15 -1.24 5.17 -26.73 -0.14 -1.38 16 3 C 0.12 1.26 0.75 -90.62 -0.07 1.19 16 4 C -0.14 -1.48 8.26 37.16 0.31 -1.17 16 5 O -0.55 -5.96 12.25 -35.23 -0.43 -6.39 16 6 C 0.10 1.33 4.82 -4.04 -0.02 1.31 16 7 N -0.73 -12.36 5.14 -61.24 -0.31 -12.67 16 8 C 0.56 12.53 7.77 -12.32 -0.10 12.43 16 9 O -0.55 -13.96 16.33 5.32 0.09 -13.87 16 10 C -0.13 -3.09 5.87 -105.04 -0.62 -3.70 16 11 C -0.22 -4.65 9.55 -38.92 -0.37 -5.02 16 12 C -0.10 -2.12 10.01 -39.72 -0.40 -2.52 16 13 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 14 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16 15 C -0.46 -12.22 9.05 -37.73 -0.34 -12.56 16 16 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 19 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 24 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 30 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.38 3.00 9.05 45.56 0.41 3.41 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 6.26 5.00 -40.82 -0.20 6.06 16 36 H 0.09 1.63 6.38 -52.49 -0.33 1.29 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 40 H 0.13 3.88 5.76 -52.49 -0.30 3.58 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -30.54 329.47 -7.66 -38.20 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -4.77 Total: 12.87 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.77 Total: -16.64 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.29 Total: -33.01 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.34 Total: -20.27 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.54 -7.66 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075224474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.510 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds