Wall clock time and date at job start Mon Mar 30 2020 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47281 * 2 1 4 4 C 1.52997 * 109.46823 * 60.00076 * 3 2 1 5 5 O 1.42895 * 109.47053 * 300.00219 * 3 2 1 6 6 C 1.52998 * 109.47083 * 179.97438 * 3 2 1 7 7 N 1.46498 * 109.47217 * 185.00082 * 6 3 2 8 8 C 1.34775 * 120.00628 * 180.02562 * 7 6 3 9 9 O 1.21553 * 119.99291 * 359.97438 * 8 7 6 10 10 C 1.47877 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.39916 * 120.02541 * 359.72273 * 10 8 7 12 12 C 1.38331 * 120.35819 * 179.78873 * 11 10 8 13 13 C 1.37754 * 120.41160 * 0.46128 * 12 11 10 14 14 C 1.40754 * 120.04047 * 359.79981 * 13 12 11 15 15 C 1.41435 * 120.18031 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99528 * 334.92179 * 15 14 13 17 17 C 1.39934 * 120.00257 * 154.91780 * 15 14 13 18 18 N 1.30829 * 119.99997 * 342.59321 * 17 15 14 19 19 Si 1.86797 * 120.00138 * 162.58919 * 17 15 14 20 20 H 1.48500 * 109.47150 * 60.00038 * 19 17 15 21 21 H 1.48496 * 109.47422 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47295 * 300.00229 * 19 17 15 23 23 C 1.39002 * 120.02390 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.47331 * 60.00058 * 1 2 3 25 25 H 1.09006 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47548 * 299.99823 * 1 2 3 27 27 H 1.09010 * 109.47480 * 240.00018 * 2 1 3 28 28 H 1.09004 * 109.47466 * 120.00474 * 2 1 3 29 29 H 1.08992 * 109.47133 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.46987 * 300.00017 * 4 3 2 31 31 H 1.09006 * 109.47403 * 59.99835 * 4 3 2 32 32 H 0.96704 * 113.99666 * 299.99427 * 5 3 2 33 33 H 1.08995 * 109.47537 * 305.00196 * 6 3 2 34 34 H 1.09005 * 109.46716 * 65.00381 * 6 3 2 35 35 H 0.97004 * 119.99355 * 0.02562 * 7 6 3 36 36 H 1.07996 * 119.82172 * 0.02562 * 11 10 8 37 37 H 1.08003 * 119.79956 * 180.23551 * 12 11 10 38 38 H 1.07999 * 119.98313 * 179.76542 * 13 12 11 39 39 H 0.97000 * 120.00366 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.20197 * 359.96393 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5700 1.4425 0.0006 7 7 4.0583 2.8184 0.1210 8 6 5.3833 3.0639 0.1425 9 8 6.1732 2.1434 0.0625 10 6 5.8762 4.4527 0.2646 11 6 4.9674 5.5130 0.3521 12 6 5.4209 6.8145 0.4709 13 6 6.7718 7.0828 0.4950 14 6 7.7011 6.0296 0.4027 15 6 9.0888 6.3018 0.4266 16 1 9.4549 7.2683 0.1133 17 6 9.9874 5.3188 0.8561 18 7 9.5556 4.2942 1.5456 19 14 11.8033 5.4694 0.4451 20 1 12.3402 6.7255 1.0277 21 1 12.5367 4.3082 1.0097 22 1 11.9767 5.4942 -1.0296 23 6 7.2427 4.7063 0.2874 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8937 3.1912 1.2495 30 1 0.4399 2.1637 1.2492 31 1 1.8933 1.6498 2.1393 32 1 1.8490 1.7126 -1.9979 33 1 3.9330 0.8532 0.8426 34 1 3.9336 1.0081 -0.9306 35 1 3.4279 3.5529 0.1853 36 1 3.9062 5.3139 0.3305 37 1 4.7114 7.6257 0.5415 38 1 7.1182 8.1018 0.5841 39 1 10.1783 3.6126 1.8431 40 1 7.9478 3.8913 0.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075224474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:03 Heat of formation + Delta-G solvation = -106.687425 kcal Electronic energy + Delta-G solvation = -21250.911278 eV Core-core repulsion = 18028.666622 eV Total energy + Delta-G solvation = -3222.244656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10099 -39.62828 -38.67414 -35.70799 -35.28197 -34.08309 -32.16385 -31.29590 -30.33111 -28.13144 -27.12129 -24.97213 -23.38072 -22.76227 -21.43354 -20.99340 -19.58179 -18.23748 -17.42706 -17.08172 -16.72407 -16.53651 -16.35054 -15.81697 -15.72413 -15.17118 -14.99955 -14.66010 -14.37295 -14.26671 -13.56624 -13.37210 -13.36037 -13.05306 -12.94811 -12.89095 -12.80636 -12.60829 -12.52894 -12.21212 -11.91469 -11.83316 -11.53250 -11.46607 -11.08229 -11.06982 -10.69154 -10.16881 -9.47762 -9.39494 -8.66682 -6.38954 0.36652 1.00420 1.36190 1.47857 1.50532 2.08627 2.19265 2.22113 2.78173 3.30857 3.58342 3.68816 3.83371 3.88964 4.03231 4.33291 4.40554 4.54547 4.57684 4.60936 4.68421 4.77337 4.89667 4.93866 5.01321 5.07456 5.08671 5.14034 5.17982 5.30337 5.36544 5.43366 5.48724 5.51416 5.85327 5.91673 6.04188 6.27541 6.49225 6.65903 6.80306 6.87224 6.93724 7.28783 8.30110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.003836 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.485824 B = 7296.597232 C = 7950.493988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.132 3.868 4 C -0.147 4.147 5 O -0.563 6.563 6 C 0.092 3.908 7 N -0.706 5.706 8 C 0.558 3.442 9 O -0.591 6.591 10 C -0.140 4.140 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.217 4.217 14 C 0.068 3.932 15 C -0.499 4.499 16 H 0.085 0.915 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.252 1.252 21 H -0.272 1.272 22 H -0.261 1.261 23 C -0.130 4.130 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.388 0.612 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 -5.853 -2.143 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.091 3.909 4 C -0.204 4.204 5 O -0.371 6.371 6 C -0.032 4.032 7 N -0.359 5.359 8 C 0.348 3.652 9 O -0.473 6.473 10 C -0.143 4.143 11 C -0.218 4.218 12 C -0.113 4.113 13 C -0.236 4.236 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.176 1.176 21 H -0.196 1.196 22 H -0.185 1.185 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.258 -6.346 -1.618 16.604 hybrid contribution 1.226 -0.210 -0.371 1.298 sum -14.031 -6.556 -1.989 15.615 Atomic orbital electron populations 1.21708 0.93978 1.02033 1.02517 1.22110 0.97900 0.94428 1.03749 1.21382 0.88517 0.93571 0.87471 1.21870 1.02881 1.00533 0.95107 1.86527 1.76575 1.57705 1.16253 1.22200 0.95832 0.83037 1.02164 1.45715 1.05699 1.10070 1.74464 1.18759 0.82674 0.88887 0.74890 1.90664 1.57007 1.47250 1.52362 1.19788 0.94725 0.92255 1.07534 1.20815 0.97736 0.92017 1.11225 1.20921 0.95022 0.96435 0.98934 1.21419 0.93577 0.98125 1.10525 1.17948 0.94344 0.91518 0.89640 1.19847 0.91625 1.00766 1.40533 0.89719 1.26869 1.06504 0.93495 0.91714 1.69887 1.39516 1.10131 1.25577 0.85223 0.75428 0.79188 0.79733 1.17592 1.19643 1.18520 1.21435 0.93433 0.97543 1.02633 0.92379 0.91857 0.92224 0.90666 0.90360 0.92663 0.89979 0.90403 0.76209 0.91614 0.91833 0.74925 0.85111 0.84371 0.87228 0.90296 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.41 71.98 0.68 -1.16 16 2 C -0.14 -2.06 5.17 30.59 0.16 -1.91 16 3 C 0.13 2.45 0.75 -10.79 -0.01 2.45 16 4 C -0.15 -2.67 8.26 71.98 0.59 -2.08 16 5 O -0.56 -10.59 12.25 -148.98 -1.83 -12.41 16 6 C 0.09 2.40 4.82 86.38 0.42 2.82 16 7 N -0.71 -22.99 5.14 -465.95 -2.39 -25.38 16 8 C 0.56 25.09 7.77 86.80 0.67 25.77 16 9 O -0.59 -31.17 16.33 -3.88 -0.06 -31.23 16 10 C -0.14 -6.78 5.87 -20.14 -0.12 -6.90 16 11 C -0.20 -8.04 9.55 22.70 0.22 -7.83 16 12 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 13 C -0.22 -10.27 9.78 22.77 0.22 -10.04 16 14 C 0.07 3.73 5.57 -21.32 -0.12 3.62 16 15 C -0.50 -27.42 9.05 23.47 0.21 -27.20 16 16 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 17 C 0.03 1.54 5.14 85.25 0.44 1.97 16 18 N -0.83 -46.52 10.97 21.82 0.24 -46.28 16 19 Si 0.98 39.91 29.59 68.60 2.03 41.94 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 C -0.13 -7.34 8.23 23.01 0.19 -7.15 16 24 H 0.06 0.78 7.68 -2.38 -0.02 0.77 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.11 6.57 -2.39 -0.02 1.10 16 30 H 0.08 1.28 6.43 -2.38 -0.02 1.27 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.39 5.21 9.05 -74.05 -0.67 4.54 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.41 11.75 5.00 -92.71 -0.46 11.28 16 36 H 0.13 4.18 6.38 -2.91 -0.02 4.16 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 40 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 Total: -1.00 -69.71 329.47 1.70 -68.02 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.07 Total: 36.62 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 3.78 Total: -31.28 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.16 Total: -71.66 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.89 Total: -43.64 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -69.71 1.70 -68.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075224474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.670 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds