Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 C 1.52995 * 109.47216 * 305.00400 * 3 2 1 5 5 O 1.42906 * 109.47109 * 65.00113 * 3 2 1 6 6 C 1.52998 * 109.47584 * 184.99829 * 3 2 1 7 7 N 1.46501 * 109.47637 * 180.02562 * 6 3 2 8 8 C 1.34773 * 120.00395 * 179.97438 * 7 6 3 9 9 O 1.21553 * 119.99589 * 0.02562 * 8 7 6 10 10 C 1.47877 * 120.00315 * 180.02562 * 8 7 6 11 11 C 1.39926 * 120.02406 * 359.72689 * 10 8 7 12 12 C 1.38327 * 120.35971 * 179.74246 * 11 10 8 13 13 C 1.37760 * 120.41041 * 0.55329 * 12 11 10 14 14 C 1.40752 * 120.03586 * 359.70383 * 13 12 11 15 15 C 1.41441 * 120.17334 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99913 * 24.43577 * 15 14 13 17 17 C 1.39938 * 119.99719 * 204.43287 * 15 14 13 18 18 N 1.30822 * 120.00353 * 17.89047 * 17 15 14 19 19 Si 1.86801 * 119.99731 * 197.89163 * 17 15 14 20 20 H 1.48498 * 109.47086 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47058 * 119.99868 * 19 17 15 22 22 H 1.48499 * 109.47047 * 240.00048 * 19 17 15 23 23 C 1.38992 * 120.02690 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47132 * 59.99954 * 1 2 3 25 25 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46964 * 299.99637 * 1 2 3 27 27 H 1.09007 * 109.47464 * 240.00624 * 2 1 3 28 28 H 1.08998 * 109.47403 * 120.00461 * 2 1 3 29 29 H 1.08999 * 109.47045 * 299.99329 * 4 3 2 30 30 H 1.09002 * 109.47501 * 59.99638 * 4 3 2 31 31 H 1.09004 * 109.46961 * 179.97438 * 4 3 2 32 32 H 0.96707 * 113.99740 * 59.99537 * 5 3 2 33 33 H 1.09001 * 109.46688 * 59.99762 * 6 3 2 34 34 H 1.09006 * 109.47290 * 300.00596 * 6 3 2 35 35 H 0.96999 * 119.99343 * 0.02562 * 7 6 3 36 36 H 1.07996 * 119.81917 * 0.02562 * 11 10 8 37 37 H 1.07995 * 119.79715 * 180.28045 * 12 11 10 38 38 H 1.07993 * 119.98097 * 179.71590 * 13 12 11 39 39 H 0.96996 * 120.00285 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.20579 * 359.96007 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0533 2.8256 -0.1251 8 6 5.3742 3.0734 -0.2261 9 8 6.1602 2.1508 -0.3182 10 6 5.8672 4.4675 -0.2249 11 6 4.9623 5.5301 -0.1247 12 6 5.4163 6.8367 -0.1175 13 6 6.7631 7.1076 -0.2204 14 6 7.6878 6.0519 -0.3275 15 6 9.0713 6.3266 -0.4328 16 1 9.4682 7.2550 -0.0495 17 6 9.9258 5.3954 -1.0336 18 7 9.4342 4.4546 -1.7983 19 14 11.7684 5.4958 -0.7437 20 1 12.0668 6.6411 0.1531 21 1 12.2393 4.2372 -0.1117 22 1 12.4639 5.6884 -2.0416 23 6 7.2294 4.7236 -0.3286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7183 1.7119 -2.1129 30 1 0.3436 2.1979 -1.0920 31 1 1.7930 3.2269 -1.1812 32 1 2.0142 1.6541 2.0140 33 1 3.8532 0.9570 -1.0570 34 1 3.9995 0.9053 0.7161 35 1 3.4259 3.5617 -0.0512 36 1 3.9041 5.3288 -0.0478 37 1 4.7102 7.6497 -0.0352 38 1 7.1095 8.1304 -0.2188 39 1 10.0265 3.8094 -2.2150 40 1 7.9312 3.9067 -0.4096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075224476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -86.042044 kcal Electronic energy + Delta-G solvation = -21250.179874 eV Core-core repulsion = 18028.830470 eV Total energy + Delta-G solvation = -3221.349405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63512 -38.37849 -36.89609 -34.03304 -33.67412 -33.28002 -30.44960 -29.45613 -29.26373 -26.99846 -25.27405 -23.83022 -21.90966 -20.91731 -20.41754 -19.44816 -17.83512 -16.81989 -16.09378 -15.67951 -15.39814 -15.03714 -14.84299 -14.54126 -14.36024 -13.65783 -13.60226 -13.16551 -12.69095 -12.56383 -12.48021 -12.33762 -12.29097 -12.17633 -11.78999 -11.62390 -11.16378 -11.15133 -11.06380 -10.75036 -10.67443 -10.47733 -10.09674 -10.01226 -9.66848 -9.21026 -8.99665 -8.63674 -7.61183 -7.50381 -6.79162 -4.40077 2.22899 2.81918 3.08540 3.13464 3.15994 3.61663 3.88223 3.93046 4.16034 4.52098 4.64178 4.64894 4.70048 5.07215 5.24634 5.38314 5.57393 5.61300 5.63650 5.67139 5.72379 5.78412 5.85053 5.93708 6.03828 6.11523 6.16989 6.30668 6.73584 6.87408 7.00207 7.03727 7.22652 7.39911 7.50730 7.72342 7.78259 7.94601 8.12505 8.21285 8.52223 8.81616 8.84969 8.97596 10.15585 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.003839 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.852551 B = 7291.192033 C = 7945.991997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.120 3.880 4 C -0.143 4.143 5 O -0.554 6.554 6 C 0.097 3.903 7 N -0.729 5.729 8 C 0.562 3.438 9 O -0.550 6.550 10 C -0.128 4.128 11 C -0.216 4.216 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.092 4.092 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.377 0.623 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 -6.540 2.340 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.200 4.200 5 O -0.360 6.360 6 C -0.028 4.028 7 N -0.384 5.384 8 C 0.353 3.647 9 O -0.428 6.428 10 C -0.131 4.131 11 C -0.236 4.236 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.113 4.113 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.224 0.776 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.883 -7.016 1.691 14.766 hybrid contribution 0.806 -0.114 0.394 0.904 sum -12.077 -7.130 2.085 14.178 Atomic orbital electron populations 1.21755 0.94906 1.01357 1.02627 1.22127 0.97278 0.96029 1.03048 1.21479 0.91985 0.92409 0.86203 1.21822 1.01491 1.01015 0.95671 1.86547 1.76760 1.57403 1.15299 1.21903 0.93248 0.85091 1.02584 1.45857 1.08086 1.07661 1.76836 1.18872 0.81138 0.90010 0.74670 1.90690 1.55582 1.46509 1.50028 1.19469 0.95297 0.90179 1.08185 1.20358 0.96285 0.92688 1.14319 1.20438 0.95292 0.95019 1.00866 1.21104 0.92565 0.97700 1.11802 1.17607 0.93273 0.90689 0.88878 1.19616 0.91811 1.03707 1.33751 0.90048 1.25967 1.01819 0.94058 0.92756 1.69798 1.38162 1.12637 1.20177 0.86240 0.81771 0.79497 0.79131 1.18342 1.19575 1.19933 1.21634 0.92601 0.97858 0.99169 0.92251 0.92943 0.92067 0.90779 0.91439 0.90953 0.91305 0.91600 0.77581 0.91102 0.91798 0.76016 0.89214 0.88891 0.88618 0.90524 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.32 37.16 0.35 -0.81 16 2 C -0.15 -1.24 5.20 -26.73 -0.14 -1.38 16 3 C 0.12 1.26 0.74 -90.62 -0.07 1.19 16 4 C -0.14 -1.48 8.18 37.15 0.30 -1.18 16 5 O -0.55 -5.97 12.26 -35.23 -0.43 -6.40 16 6 C 0.10 1.33 4.78 -4.04 -0.02 1.31 16 7 N -0.73 -12.34 5.10 -61.24 -0.31 -12.65 16 8 C 0.56 12.53 7.77 -12.32 -0.10 12.43 16 9 O -0.55 -13.97 16.33 5.32 0.09 -13.88 16 10 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 11 C -0.22 -4.66 9.55 -38.92 -0.37 -5.03 16 12 C -0.10 -2.12 10.01 -39.72 -0.40 -2.52 16 13 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 14 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 15 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 16 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 17 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 18 N -0.78 -20.91 10.96 55.55 0.61 -20.30 16 19 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.09 -2.50 8.24 -38.44 -0.32 -2.82 16 24 H 0.06 0.45 6.35 -51.93 -0.33 0.12 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.64 6.35 -51.93 -0.33 0.31 16 31 H 0.07 0.76 6.86 -51.93 -0.36 0.40 16 32 H 0.38 3.04 9.05 45.56 0.41 3.45 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 6.28 5.21 -40.82 -0.21 6.07 16 36 H 0.09 1.64 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 40 H 0.13 3.89 5.74 -52.48 -0.30 3.59 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -30.55 329.69 -7.68 -38.23 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.79 Total: 12.87 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.78 Total: -16.69 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.30 Total: -32.95 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.34 Total: -20.29 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.55 -7.68 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075224476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.810 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds