Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 C 1.52995 * 109.47216 * 305.00400 * 3 2 1 5 5 O 1.42906 * 109.47109 * 65.00113 * 3 2 1 6 6 C 1.52998 * 109.47584 * 184.99829 * 3 2 1 7 7 N 1.46501 * 109.47637 * 180.02562 * 6 3 2 8 8 C 1.34773 * 120.00395 * 179.97438 * 7 6 3 9 9 O 1.21553 * 119.99589 * 0.02562 * 8 7 6 10 10 C 1.47877 * 120.00315 * 180.02562 * 8 7 6 11 11 C 1.39926 * 120.02406 * 359.72689 * 10 8 7 12 12 C 1.38327 * 120.35971 * 179.74246 * 11 10 8 13 13 C 1.37760 * 120.41041 * 0.55329 * 12 11 10 14 14 C 1.40752 * 120.03586 * 359.70383 * 13 12 11 15 15 C 1.41441 * 120.17334 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99913 * 24.43577 * 15 14 13 17 17 C 1.39938 * 119.99719 * 204.43287 * 15 14 13 18 18 N 1.30822 * 120.00353 * 17.89047 * 17 15 14 19 19 Si 1.86801 * 119.99731 * 197.89163 * 17 15 14 20 20 H 1.48498 * 109.47086 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47058 * 119.99868 * 19 17 15 22 22 H 1.48499 * 109.47047 * 240.00048 * 19 17 15 23 23 C 1.38992 * 120.02690 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47132 * 59.99954 * 1 2 3 25 25 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46964 * 299.99637 * 1 2 3 27 27 H 1.09007 * 109.47464 * 240.00624 * 2 1 3 28 28 H 1.08998 * 109.47403 * 120.00461 * 2 1 3 29 29 H 1.08999 * 109.47045 * 299.99329 * 4 3 2 30 30 H 1.09002 * 109.47501 * 59.99638 * 4 3 2 31 31 H 1.09004 * 109.46961 * 179.97438 * 4 3 2 32 32 H 0.96707 * 113.99740 * 59.99537 * 5 3 2 33 33 H 1.09001 * 109.46688 * 59.99762 * 6 3 2 34 34 H 1.09006 * 109.47290 * 300.00596 * 6 3 2 35 35 H 0.96999 * 119.99343 * 0.02562 * 7 6 3 36 36 H 1.07996 * 119.81917 * 0.02562 * 11 10 8 37 37 H 1.07995 * 119.79715 * 180.28045 * 12 11 10 38 38 H 1.07993 * 119.98097 * 179.71590 * 13 12 11 39 39 H 0.96996 * 120.00285 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.20579 * 359.96007 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0533 2.8256 -0.1251 8 6 5.3742 3.0734 -0.2261 9 8 6.1602 2.1508 -0.3182 10 6 5.8672 4.4675 -0.2249 11 6 4.9623 5.5301 -0.1247 12 6 5.4163 6.8367 -0.1175 13 6 6.7631 7.1076 -0.2204 14 6 7.6878 6.0519 -0.3275 15 6 9.0713 6.3266 -0.4328 16 1 9.4682 7.2550 -0.0495 17 6 9.9258 5.3954 -1.0336 18 7 9.4342 4.4546 -1.7983 19 14 11.7684 5.4958 -0.7437 20 1 12.0668 6.6411 0.1531 21 1 12.2393 4.2372 -0.1117 22 1 12.4639 5.6884 -2.0416 23 6 7.2294 4.7236 -0.3286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7183 1.7119 -2.1129 30 1 0.3436 2.1979 -1.0920 31 1 1.7930 3.2269 -1.1812 32 1 2.0142 1.6541 2.0140 33 1 3.8532 0.9570 -1.0570 34 1 3.9995 0.9053 0.7161 35 1 3.4259 3.5617 -0.0512 36 1 3.9041 5.3288 -0.0478 37 1 4.7102 7.6497 -0.0352 38 1 7.1095 8.1304 -0.2188 39 1 10.0265 3.8094 -2.2150 40 1 7.9312 3.9067 -0.4096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075224476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = -107.013146 kcal Electronic energy + Delta-G solvation = -21251.089250 eV Core-core repulsion = 18028.830470 eV Total energy + Delta-G solvation = -3222.258780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09450 -39.62757 -38.67292 -35.70411 -35.25591 -34.14910 -32.16213 -31.29429 -30.29930 -28.11880 -27.12483 -24.98109 -23.38863 -22.76097 -21.45153 -20.96170 -19.57656 -18.24226 -17.43303 -17.07518 -16.69975 -16.54274 -16.35377 -15.81444 -15.72332 -15.17528 -14.99955 -14.66958 -14.38450 -14.26434 -13.56416 -13.36970 -13.36466 -13.04708 -12.96421 -12.89437 -12.79653 -12.61280 -12.54503 -12.18571 -11.90975 -11.81444 -11.52631 -11.47135 -11.09127 -11.06741 -10.69120 -10.16583 -9.48008 -9.39546 -8.67375 -6.38778 0.36745 0.99540 1.36349 1.46297 1.52848 2.08666 2.18995 2.21856 2.77701 3.31864 3.58520 3.68991 3.82190 3.90114 4.03988 4.33268 4.40781 4.54026 4.58110 4.61824 4.68422 4.78170 4.89808 4.94111 5.01354 5.07458 5.08640 5.14446 5.18172 5.30552 5.36166 5.43398 5.48306 5.51476 5.85630 5.91962 6.04484 6.27514 6.49695 6.66260 6.80014 6.87248 6.93729 7.29152 8.29653 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.003839 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.852551 B = 7291.192033 C = 7945.991997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.132 3.868 4 C -0.147 4.147 5 O -0.563 6.563 6 C 0.091 3.909 7 N -0.705 5.705 8 C 0.558 3.442 9 O -0.591 6.591 10 C -0.140 4.140 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.217 4.217 14 C 0.067 3.933 15 C -0.496 4.496 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.825 5.825 19 Si 0.984 3.016 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.264 1.264 23 C -0.131 4.131 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.388 0.612 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.381 -6.112 2.849 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.091 3.909 4 C -0.204 4.204 5 O -0.371 6.371 6 C -0.033 4.033 7 N -0.359 5.359 8 C 0.348 3.652 9 O -0.473 6.473 10 C -0.143 4.143 11 C -0.218 4.218 12 C -0.113 4.113 13 C -0.237 4.237 14 C 0.065 3.935 15 C -0.526 4.526 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.188 1.188 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.119 -6.573 2.215 16.634 hybrid contribution 1.250 -0.236 0.271 1.301 sum -13.868 -6.809 2.486 15.648 Atomic orbital electron populations 1.21733 0.94017 1.02085 1.02506 1.22108 0.97906 0.94425 1.03723 1.21391 0.89200 0.93926 0.86411 1.21884 1.02380 1.00275 0.95853 1.86525 1.76742 1.57966 1.15836 1.22197 0.95840 0.82891 1.02334 1.45666 1.06160 1.09622 1.74404 1.18755 0.82619 0.88972 0.74849 1.90665 1.57077 1.47320 1.52241 1.19786 0.94830 0.92166 1.07491 1.20816 0.97839 0.91953 1.11210 1.20917 0.95039 0.96405 0.98933 1.21414 0.93548 0.97721 1.11015 1.17958 0.94307 0.91376 0.89872 1.19891 0.92638 1.04665 1.35365 0.89752 1.26874 1.06612 0.93279 0.91847 1.69895 1.39888 1.13741 1.21511 0.85136 0.75588 0.79491 0.79376 1.17430 1.19540 1.18824 1.21439 0.93655 0.97276 1.02742 0.92073 0.91857 0.92447 0.90400 0.90618 0.90389 0.89943 0.92747 0.76209 0.91652 0.91844 0.74918 0.85112 0.84395 0.87248 0.90296 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.32 71.98 0.67 -1.18 16 2 C -0.14 -2.06 5.20 30.59 0.16 -1.90 16 3 C 0.13 2.45 0.74 -10.80 -0.01 2.45 16 4 C -0.15 -2.67 8.18 71.98 0.59 -2.08 16 5 O -0.56 -10.59 12.26 -148.98 -1.83 -12.41 16 6 C 0.09 2.39 4.78 86.38 0.41 2.81 16 7 N -0.71 -22.94 5.10 -465.93 -2.38 -25.32 16 8 C 0.56 25.09 7.77 86.80 0.67 25.76 16 9 O -0.59 -31.18 16.33 -3.88 -0.06 -31.25 16 10 C -0.14 -6.76 5.87 -20.14 -0.12 -6.88 16 11 C -0.20 -8.06 9.55 22.70 0.22 -7.84 16 12 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 13 C -0.22 -10.30 9.78 22.77 0.22 -10.08 16 14 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 15 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 16 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 17 C 0.03 1.52 5.14 85.26 0.44 1.96 16 18 N -0.82 -46.43 10.96 21.82 0.24 -46.19 16 19 Si 0.98 39.91 29.60 68.60 2.03 41.94 16 20 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.13 -7.37 8.24 23.01 0.19 -7.18 16 24 H 0.06 0.75 6.35 -2.39 -0.02 0.74 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.78 7.82 -2.39 -0.02 0.76 16 27 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.29 6.35 -2.39 -0.02 1.27 16 31 H 0.05 1.11 6.86 -2.38 -0.02 1.09 16 32 H 0.39 5.26 9.05 -74.05 -0.67 4.59 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.41 11.78 5.21 -92.71 -0.48 11.30 16 36 H 0.13 4.19 6.38 -2.91 -0.02 4.17 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.29 14.80 8.30 -92.71 -0.77 14.03 16 40 H 0.10 6.21 5.74 -2.91 -0.02 6.20 16 Total: -1.00 -69.69 329.69 1.68 -68.01 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.09 Total: 36.51 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.76 Total: -31.31 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.14 Total: -71.50 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.89 Total: -43.66 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -69.69 1.68 -68.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075224476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.006 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds