Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36906 * 120.00168 * 2 1 4 4 H 1.08002 * 120.00014 * 159.33281 * 3 2 1 5 5 C 1.39019 * 119.99943 * 339.33852 * 3 2 1 6 6 N 1.31381 * 120.00313 * 28.67403 * 5 3 2 7 7 Si 1.86805 * 119.99936 * 208.67452 * 5 3 2 8 8 H 1.48497 * 109.46855 * 60.00005 * 7 5 3 9 9 H 1.48501 * 109.47085 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47134 * 299.99802 * 7 5 3 11 11 C 1.34771 * 120.00141 * 180.02562 * 2 1 3 12 12 O 1.21617 * 120.00366 * 190.57833 * 11 2 1 13 13 C 1.47497 * 119.99791 * 10.57798 * 11 2 1 14 14 C 1.39804 * 120.09417 * 135.64246 * 13 11 2 15 15 C 1.37686 * 119.90746 * 180.29732 * 14 13 11 16 16 C 1.39016 * 120.08936 * 359.44827 * 15 14 13 17 17 O 1.35715 * 119.90341 * 180.25269 * 16 15 14 18 18 C 1.42906 * 116.99877 * 357.03958 * 17 16 15 19 19 C 1.53001 * 109.46879 * 62.04202 * 18 17 16 20 20 C 1.53003 * 109.46731 * 182.03952 * 18 17 16 21 21 C 1.52995 * 109.47301 * 302.03799 * 18 17 16 22 22 C 1.39007 * 120.18892 * 0.55643 * 16 15 14 23 23 C 1.37685 * 120.09609 * 359.71866 * 22 16 15 24 24 H 1.08999 * 109.47048 * 279.05181 * 1 2 3 25 25 H 1.08999 * 109.46797 * 39.04944 * 1 2 3 26 26 H 1.08998 * 109.47029 * 159.04852 * 1 2 3 27 27 H 0.96996 * 120.00351 * 179.97438 * 6 5 3 28 28 H 1.08007 * 120.04640 * 0.02562 * 14 13 11 29 29 H 1.07994 * 119.95573 * 179.72186 * 15 14 13 30 30 H 1.08995 * 109.47486 * 81.08015 * 19 18 17 31 31 H 1.09002 * 109.46368 * 201.08341 * 19 18 17 32 32 H 1.09003 * 109.47142 * 321.07997 * 19 18 17 33 33 H 1.08997 * 109.47484 * 60.00054 * 20 18 17 34 34 H 1.09003 * 109.46912 * 180.02562 * 20 18 17 35 35 H 1.09004 * 109.46849 * 300.00100 * 20 18 17 36 36 H 1.09003 * 109.47338 * 55.71259 * 21 18 17 37 37 H 1.08999 * 109.47189 * 175.71639 * 21 18 17 38 38 H 1.09004 * 109.47006 * 295.71802 * 21 18 17 39 39 H 1.07998 * 119.95168 * 179.70432 * 22 16 15 40 40 H 1.08000 * 120.04771 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1775 1.2157 0.3301 5 6 1.5216 2.3509 -0.4248 6 7 0.2213 2.4827 -0.2909 7 14 2.5265 3.7293 -1.1861 8 1 3.2128 3.2272 -2.4036 9 1 1.6277 4.8534 -1.5519 10 1 3.5380 4.2032 -0.2076 11 6 2.1389 -1.1671 -0.0005 12 8 3.3395 -1.1762 0.1928 13 6 1.4202 -2.4335 -0.2356 14 6 1.9556 -3.3935 -1.0994 15 6 1.2785 -4.5718 -1.3208 16 6 0.0696 -4.8123 -0.6779 17 8 -0.5921 -5.9771 -0.8949 18 6 -0.0216 -6.8802 -1.8442 19 6 1.3604 -7.3232 -1.3598 20 6 -0.9272 -8.1046 -1.9912 21 6 0.1126 -6.1797 -3.1977 22 6 -0.4664 -3.8604 0.1817 23 6 0.2014 -2.6771 0.4044 24 1 -0.3633 0.1617 1.0149 25 1 -0.3633 0.7981 -0.6474 26 1 -0.3633 -0.9597 -0.3675 27 1 -0.2169 3.2958 -0.5869 28 1 2.8970 -3.2094 -1.5958 29 1 1.6892 -5.3120 -1.9913 30 1 1.2496 -8.1201 -0.6245 31 1 1.9422 -7.6881 -2.2063 32 1 1.8741 -6.4769 -0.9037 33 1 -1.9118 -7.7891 -2.3362 34 1 -0.4919 -8.7937 -2.7150 35 1 -1.0228 -8.6037 -1.0269 36 1 0.6947 -5.2659 -3.0778 37 1 0.6169 -6.8421 -3.9012 38 1 -0.8783 -5.9318 -3.5784 39 1 -1.4082 -4.0492 0.6755 40 1 -0.2160 -1.9379 1.0721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079540803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -24.860318 kcal Electronic energy + Delta-G solvation = -21728.655037 eV Core-core repulsion = 18509.958671 eV Total energy + Delta-G solvation = -3218.696366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89569 -40.58188 -38.27223 -36.78608 -35.11022 -33.88190 -32.14951 -31.16575 -28.62788 -28.34205 -27.90140 -26.63307 -24.23980 -23.65194 -21.42070 -21.12295 -19.13963 -18.34146 -18.27515 -16.98670 -16.89335 -16.31001 -16.10202 -15.90676 -15.83431 -15.22463 -14.86686 -14.81868 -14.49806 -14.16409 -13.91075 -13.54384 -13.38966 -13.22974 -13.04663 -12.94749 -12.91140 -12.83795 -12.59413 -12.47127 -12.19683 -12.06525 -11.72208 -11.52184 -11.34292 -10.78112 -10.48876 -10.01146 -9.83030 -9.08718 -8.41838 -5.91264 0.13613 0.35089 1.35979 1.40863 1.50720 2.00657 2.19493 2.22995 2.73897 2.87943 3.16111 3.71983 3.83620 3.85550 3.90916 3.99521 4.01964 4.27341 4.37113 4.55356 4.61295 4.66486 4.68823 4.76870 4.85717 4.92243 4.93713 4.97307 5.02953 5.17866 5.19961 5.25198 5.31530 5.32519 5.39865 5.53015 5.63521 5.70804 6.06591 6.47320 6.49281 7.08138 7.39640 7.97904 8.50783 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035383 B = 0.003940 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.146925 B = 7104.303129 C = 7270.844551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.447 5.447 3 C -0.364 4.364 4 H 0.074 0.926 5 C 0.015 3.985 6 N -0.866 5.866 7 Si 0.983 3.017 8 H -0.276 1.276 9 H -0.262 1.262 10 H -0.270 1.270 11 C 0.466 3.534 12 O -0.642 6.642 13 C -0.159 4.159 14 C -0.054 4.054 15 C -0.213 4.213 16 C 0.145 3.855 17 O -0.313 6.313 18 C 0.097 3.903 19 C -0.200 4.200 20 C -0.134 4.134 21 C -0.205 4.205 22 C -0.158 4.158 23 C -0.064 4.064 24 H 0.036 0.964 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.280 0.720 28 H 0.121 0.879 29 H 0.178 0.822 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.155 0.845 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -18.344 -6.220 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.163 5.163 3 C -0.491 4.491 4 H 0.092 0.908 5 C -0.189 4.189 6 N -0.503 5.503 7 Si 0.806 3.194 8 H -0.201 1.201 9 H -0.186 1.186 10 H -0.195 1.195 11 C 0.257 3.743 12 O -0.532 6.532 13 C -0.162 4.162 14 C -0.074 4.074 15 C -0.231 4.231 16 C 0.098 3.902 17 O -0.227 6.227 18 C 0.060 3.940 19 C -0.257 4.257 20 C -0.190 4.190 21 C -0.261 4.261 22 C -0.177 4.177 23 C -0.082 4.082 24 H 0.055 0.945 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.195 0.805 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.172 0.828 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.215 -18.221 -6.063 20.184 hybrid contribution 0.736 1.093 0.001 1.318 sum -5.479 -17.128 -6.062 18.977 Atomic orbital electron populations 1.22864 0.79378 1.03251 1.02268 1.43752 1.07007 1.04547 1.61041 1.19547 0.97512 0.86255 1.45756 0.90757 1.26098 0.96960 1.00599 0.95249 1.69985 1.10240 1.28432 1.41639 0.85183 0.78501 0.76789 0.78963 1.20118 1.18615 1.19546 1.18575 0.86851 0.84452 0.84388 1.90531 1.17165 1.87704 1.57796 1.19894 0.97577 0.95345 1.03392 1.21002 0.98753 0.92287 0.95334 1.21961 0.96476 0.99317 1.05341 1.19088 0.90852 0.86163 0.94074 1.86096 1.50378 1.26207 1.60011 1.22161 0.94820 0.89534 0.87515 1.22875 0.96153 1.03021 1.03632 1.21835 0.99240 0.94383 1.03587 1.22973 1.03937 1.02732 0.96492 1.20498 1.02685 0.92334 1.02134 1.21344 0.92482 0.96696 0.97715 0.94508 0.87312 0.91057 0.90971 0.86119 0.80528 0.90931 0.88792 0.91544 0.91611 0.88174 0.91498 0.90850 0.88551 0.91642 0.82767 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 3.05 8.00 127.77 1.02 4.07 16 2 N -0.45 -24.81 3.02 -662.58 -2.00 -26.81 16 3 C -0.36 -21.61 9.31 84.09 0.78 -20.83 16 4 H 0.07 4.74 7.44 -2.91 -0.02 4.72 16 5 C 0.01 0.78 5.31 84.95 0.45 1.23 16 6 N -0.87 -45.01 10.01 21.68 0.22 -44.79 16 7 Si 0.98 42.51 29.64 68.60 2.03 44.54 16 8 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 C 0.47 25.41 7.21 86.69 0.62 26.03 16 12 O -0.64 -39.80 16.66 -4.08 -0.07 -39.86 16 13 C -0.16 -6.82 5.27 -20.08 -0.11 -6.93 16 14 C -0.05 -2.01 9.67 22.52 0.22 -1.79 16 15 C -0.21 -6.11 5.78 22.33 0.13 -5.98 16 16 C 0.14 4.09 6.08 22.64 0.14 4.23 16 17 O -0.31 -7.60 9.78 -90.36 -0.88 -8.48 16 18 C 0.10 1.68 1.11 -10.79 -0.01 1.67 16 19 C -0.20 -3.20 8.09 71.98 0.58 -2.62 16 20 C -0.13 -1.66 8.74 71.98 0.63 -1.03 16 21 C -0.20 -3.34 8.04 71.98 0.58 -2.76 16 22 C -0.16 -4.71 9.97 22.32 0.22 -4.49 16 23 C -0.06 -2.29 7.34 22.52 0.17 -2.13 16 24 H 0.04 1.71 7.92 -2.39 -0.02 1.69 16 25 H 0.11 5.48 5.15 -2.41 -0.01 5.47 16 26 H 0.07 2.92 4.52 -2.39 -0.01 2.91 16 27 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 28 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.18 3.98 3.49 -2.91 -0.01 3.97 16 30 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 31 H 0.09 1.07 7.90 -2.39 -0.02 1.05 16 32 H 0.07 1.35 4.83 -2.39 -0.01 1.34 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 36 H 0.07 1.45 4.38 -2.39 -0.01 1.44 16 37 H 0.10 1.07 8.04 -2.39 -0.02 1.05 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.14 4.88 6.00 -2.91 -0.02 4.86 16 Total: -1.00 -70.59 314.92 5.78 -64.81 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.06 Total: 21.91 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.43 Total: -11.31 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.78 Total: -71.60 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.95 Total: -48.35 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.59 5.78 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079540803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.951 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds