Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99716 * 2 1 4 4 C 1.53000 * 109.47553 * 270.00141 * 3 2 1 5 5 C 1.53003 * 109.47306 * 185.00286 * 4 3 2 6 6 C 1.52996 * 109.46859 * 305.00231 * 4 3 2 7 7 O 1.42903 * 109.46893 * 65.00003 * 4 3 2 8 8 C 1.34770 * 120.00329 * 180.02562 * 2 1 3 9 9 O 1.21541 * 120.00223 * 174.55583 * 8 2 1 10 10 C 1.47890 * 119.99802 * 354.55640 * 8 2 1 11 11 C 1.39925 * 120.02344 * 146.86172 * 10 8 2 12 12 C 1.38326 * 120.35772 * 180.02562 * 11 10 8 13 13 C 1.37758 * 120.40995 * 359.97438 * 12 11 10 14 14 C 1.40746 * 120.04068 * 0.02562 * 13 12 11 15 15 C 1.41436 * 120.17493 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99784 * 150.33337 * 15 14 13 17 17 C 1.39931 * 120.00302 * 330.32190 * 15 14 13 18 18 N 1.30832 * 119.99901 * 344.48229 * 17 15 14 19 19 Si 1.86799 * 120.00224 * 164.47485 * 17 15 14 20 20 H 1.48494 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47347 * 120.00499 * 19 17 15 22 22 H 1.48508 * 109.46912 * 240.00449 * 19 17 15 23 23 C 1.38993 * 120.02322 * 326.88372 * 10 8 2 24 24 H 1.09000 * 109.47196 * 268.99818 * 1 2 3 25 25 H 1.08998 * 109.47274 * 29.00197 * 1 2 3 26 26 H 1.08997 * 109.46760 * 148.99987 * 1 2 3 27 27 H 1.09003 * 109.47143 * 30.00471 * 3 2 1 28 28 H 1.09008 * 109.47162 * 149.99896 * 3 2 1 29 29 H 1.08997 * 109.47166 * 59.99462 * 5 4 3 30 30 H 1.08997 * 109.47009 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46795 * 299.99626 * 5 4 3 32 32 H 1.09000 * 109.47523 * 59.99897 * 6 4 3 33 33 H 1.08997 * 109.47175 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47301 * 299.99909 * 6 4 3 35 35 H 0.96699 * 114.00135 * 60.00210 * 7 4 3 36 36 H 1.08001 * 119.81838 * 359.97438 * 11 10 8 37 37 H 1.07994 * 119.79734 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.97685 * 179.97438 * 13 12 11 39 39 H 0.96998 * 119.99924 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.20251 * 359.70039 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 6 3.3238 2.9683 -1.4442 6 6 3.1707 0.5915 -2.1991 7 8 1.2059 1.9937 -2.0813 8 6 2.1389 -1.1671 -0.0005 9 8 3.3502 -1.1694 -0.1004 10 6 1.4045 -2.4451 0.1204 11 6 1.8790 -3.5895 -0.5300 12 6 1.1973 -4.7883 -0.4220 13 6 0.0441 -4.8696 0.3271 14 6 -0.4484 -3.7290 0.9885 15 6 -1.6319 -3.8094 1.7588 16 1 -1.7666 -3.1598 2.6111 17 6 -2.6283 -4.7304 1.4167 18 7 -2.6184 -5.2967 0.2373 19 14 -3.9723 -5.1513 2.6437 20 1 -3.7593 -4.3806 3.8950 21 1 -5.2957 -4.8027 2.0674 22 1 -3.9306 -6.6051 2.9441 23 6 0.2422 -2.5100 0.8798 24 1 -0.3633 -0.0180 1.0275 25 1 -0.3634 0.8988 -0.4982 26 1 -0.3633 -0.8809 -0.5293 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.2745 2.7523 -0.9569 30 1 3.5058 3.2827 -2.4719 31 1 2.8120 3.7655 -0.9052 32 1 2.5501 -0.3046 -2.1979 33 1 3.3520 0.9060 -3.2268 34 1 4.1215 0.3755 -1.7118 35 1 0.6954 2.6950 -1.6541 36 1 2.7820 -3.5364 -1.1202 37 1 1.5718 -5.6660 -0.9275 38 1 -0.4828 -5.8090 0.4063 39 1 -3.3094 -5.9348 0.0000 40 1 -0.1252 -1.6303 1.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080822512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = -65.761260 kcal Electronic energy + Delta-G solvation = -21963.516735 eV Core-core repulsion = 18743.046771 eV Total energy + Delta-G solvation = -3220.469964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96895 -37.97997 -36.88265 -34.77108 -33.65374 -32.39627 -29.99260 -29.82507 -27.30223 -27.08623 -25.75440 -25.27173 -22.04305 -20.83560 -20.32571 -19.18456 -17.35950 -16.73917 -15.94849 -15.79705 -15.34674 -15.12810 -14.83844 -14.70838 -13.78549 -13.63978 -13.13913 -12.85795 -12.70986 -12.57723 -12.36327 -12.18258 -11.94329 -11.84793 -11.69548 -11.59934 -11.35937 -11.21612 -11.01123 -10.78799 -10.64804 -10.50166 -10.22814 -10.18938 -9.52054 -9.25444 -9.02613 -8.17650 -7.59398 -7.47890 -6.80553 -4.44804 2.26443 2.72879 3.05303 3.09820 3.11337 3.39118 3.73004 3.90866 4.26837 4.59024 4.77975 4.88659 4.98464 5.22630 5.50280 5.55019 5.56182 5.59110 5.72872 5.88313 5.88888 5.93103 6.08370 6.16938 6.21307 6.30887 6.40117 6.55383 6.76583 6.86641 6.90438 7.02611 7.16644 7.35660 7.62087 7.68185 7.78774 7.90796 7.96183 8.09511 8.50121 8.77284 8.79616 8.84004 10.16639 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.004565 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.823156 B = 6131.790016 C = 6702.737711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.609 5.609 3 C 0.094 3.906 4 C 0.111 3.889 5 C -0.174 4.174 6 C -0.130 4.130 7 O -0.554 6.554 8 C 0.567 3.433 9 O -0.553 6.553 10 C -0.117 4.117 11 C -0.175 4.175 12 C -0.116 4.116 13 C -0.134 4.134 14 C 0.102 3.898 15 C -0.469 4.469 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.190 4.190 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.368 0.632 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 11.387 -1.017 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.342 5.342 3 C -0.030 4.030 4 C 0.069 3.931 5 C -0.232 4.232 6 C -0.187 4.187 7 O -0.359 6.359 8 C 0.360 3.640 9 O -0.433 6.433 10 C -0.120 4.120 11 C -0.195 4.195 12 C -0.134 4.134 13 C -0.153 4.153 14 C 0.100 3.900 15 C -0.499 4.499 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.426 5.426 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.210 4.210 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.215 0.785 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.131 10.749 -1.606 11.627 hybrid contribution -1.003 0.235 0.845 1.333 sum 3.128 10.984 -0.761 11.446 Atomic orbital electron populations 1.22109 0.78843 1.03571 1.01383 1.47579 1.07250 1.04971 1.74351 1.22075 0.98394 0.86115 0.96420 1.21734 0.84173 0.94727 0.92444 1.22429 1.00716 0.97396 1.02704 1.21745 1.00531 0.97338 0.99061 1.86647 1.32650 1.59639 1.57011 1.18910 0.86892 0.83945 0.74290 1.90645 1.14356 1.87583 1.50678 1.19292 0.97185 0.91936 1.03565 1.20405 1.01001 0.92483 1.05630 1.20665 0.96515 0.96082 1.00176 1.21454 0.94860 0.98963 1.00032 1.17540 0.91887 0.89886 0.90681 1.19513 1.00425 1.17756 1.12169 0.90363 1.25843 0.98948 0.94206 0.94987 1.69798 1.32161 1.22353 1.18269 0.86285 0.80039 0.79145 0.81392 1.18472 1.20028 1.19771 1.21584 0.96884 0.97879 1.04619 0.92669 0.91991 0.89362 0.90816 0.89430 0.91406 0.91715 0.92485 0.91742 0.93116 0.90364 0.78546 0.88462 0.88660 0.86569 0.90894 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 8.63 59.85 0.52 1.81 16 2 N -0.61 -10.19 2.53 -182.68 -0.46 -10.65 16 3 C 0.09 1.25 4.75 -4.04 -0.02 1.23 16 4 C 0.11 1.40 1.18 -90.62 -0.11 1.30 16 5 C -0.17 -1.68 8.82 37.16 0.33 -1.35 16 6 C -0.13 -1.99 7.40 37.16 0.27 -1.72 16 7 O -0.55 -7.01 11.82 -35.23 -0.42 -7.43 16 8 C 0.57 11.68 5.83 -12.31 -0.07 11.61 16 9 O -0.55 -12.19 14.14 5.33 0.08 -12.11 16 10 C -0.12 -2.65 5.23 -105.03 -0.55 -3.20 16 11 C -0.17 -4.04 9.61 -38.92 -0.37 -4.41 16 12 C -0.12 -2.68 10.01 -39.72 -0.40 -3.07 16 13 C -0.13 -3.34 8.65 -38.81 -0.34 -3.68 16 14 C 0.10 2.59 5.51 -106.87 -0.59 2.00 16 15 C -0.47 -11.78 9.04 -37.73 -0.34 -12.12 16 16 H 0.08 1.89 7.89 -52.48 -0.41 1.48 16 17 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.80 -19.97 11.17 55.55 0.62 -19.35 16 19 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.19 -4.37 7.42 -38.44 -0.29 -4.65 16 24 H 0.05 0.82 6.64 -51.93 -0.34 0.47 16 25 H 0.06 0.78 7.13 -51.93 -0.37 0.41 16 26 H 0.09 1.61 6.10 -51.93 -0.32 1.29 16 27 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.09 1.24 7.50 -51.92 -0.39 0.85 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.19 6.18 -51.93 -0.32 0.87 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.24 7.30 -51.93 -0.38 0.86 16 35 H 0.37 3.10 9.04 45.56 0.41 3.51 16 36 H 0.10 2.15 7.96 -52.49 -0.42 1.73 16 37 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.12 2.98 6.46 -52.49 -0.34 2.65 16 39 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 40 H 0.11 2.29 5.13 -52.49 -0.27 2.02 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -28.88 322.11 -7.22 -36.10 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.82 Total: 10.08 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.04 Total: -14.49 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.16 Total: -30.00 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.34 Total: -19.54 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.88 -7.22 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080822512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.663 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds