Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99716 * 2 1 4 4 C 1.53000 * 109.47553 * 270.00141 * 3 2 1 5 5 C 1.53003 * 109.47306 * 185.00286 * 4 3 2 6 6 C 1.52996 * 109.46859 * 305.00231 * 4 3 2 7 7 O 1.42903 * 109.46893 * 65.00003 * 4 3 2 8 8 C 1.34770 * 120.00329 * 180.02562 * 2 1 3 9 9 O 1.21541 * 120.00223 * 174.55583 * 8 2 1 10 10 C 1.47890 * 119.99802 * 354.55640 * 8 2 1 11 11 C 1.39925 * 120.02344 * 146.86172 * 10 8 2 12 12 C 1.38326 * 120.35772 * 180.02562 * 11 10 8 13 13 C 1.37758 * 120.40995 * 359.97438 * 12 11 10 14 14 C 1.40746 * 120.04068 * 0.02562 * 13 12 11 15 15 C 1.41436 * 120.17493 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99784 * 150.33337 * 15 14 13 17 17 C 1.39931 * 120.00302 * 330.32190 * 15 14 13 18 18 N 1.30832 * 119.99901 * 344.48229 * 17 15 14 19 19 Si 1.86799 * 120.00224 * 164.47485 * 17 15 14 20 20 H 1.48494 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47347 * 120.00499 * 19 17 15 22 22 H 1.48508 * 109.46912 * 240.00449 * 19 17 15 23 23 C 1.38993 * 120.02322 * 326.88372 * 10 8 2 24 24 H 1.09000 * 109.47196 * 268.99818 * 1 2 3 25 25 H 1.08998 * 109.47274 * 29.00197 * 1 2 3 26 26 H 1.08997 * 109.46760 * 148.99987 * 1 2 3 27 27 H 1.09003 * 109.47143 * 30.00471 * 3 2 1 28 28 H 1.09008 * 109.47162 * 149.99896 * 3 2 1 29 29 H 1.08997 * 109.47166 * 59.99462 * 5 4 3 30 30 H 1.08997 * 109.47009 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46795 * 299.99626 * 5 4 3 32 32 H 1.09000 * 109.47523 * 59.99897 * 6 4 3 33 33 H 1.08997 * 109.47175 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47301 * 299.99909 * 6 4 3 35 35 H 0.96699 * 114.00135 * 60.00210 * 7 4 3 36 36 H 1.08001 * 119.81838 * 359.97438 * 11 10 8 37 37 H 1.07994 * 119.79734 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.97685 * 179.97438 * 13 12 11 39 39 H 0.96998 * 119.99924 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.20251 * 359.70039 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 6 3.3238 2.9683 -1.4442 6 6 3.1707 0.5915 -2.1991 7 8 1.2059 1.9937 -2.0813 8 6 2.1389 -1.1671 -0.0005 9 8 3.3502 -1.1694 -0.1004 10 6 1.4045 -2.4451 0.1204 11 6 1.8790 -3.5895 -0.5300 12 6 1.1973 -4.7883 -0.4220 13 6 0.0441 -4.8696 0.3271 14 6 -0.4484 -3.7290 0.9885 15 6 -1.6319 -3.8094 1.7588 16 1 -1.7666 -3.1598 2.6111 17 6 -2.6283 -4.7304 1.4167 18 7 -2.6184 -5.2967 0.2373 19 14 -3.9723 -5.1513 2.6437 20 1 -3.7593 -4.3806 3.8950 21 1 -5.2957 -4.8027 2.0674 22 1 -3.9306 -6.6051 2.9441 23 6 0.2422 -2.5100 0.8798 24 1 -0.3633 -0.0180 1.0275 25 1 -0.3634 0.8988 -0.4982 26 1 -0.3633 -0.8809 -0.5293 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.2745 2.7523 -0.9569 30 1 3.5058 3.2827 -2.4719 31 1 2.8120 3.7655 -0.9052 32 1 2.5501 -0.3046 -2.1979 33 1 3.3520 0.9060 -3.2268 34 1 4.1215 0.3755 -1.7118 35 1 0.6954 2.6950 -1.6541 36 1 2.7820 -3.5364 -1.1202 37 1 1.5718 -5.6660 -0.9275 38 1 -0.4828 -5.8090 0.4063 39 1 -3.3094 -5.9348 0.0000 40 1 -0.1252 -1.6303 1.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080822512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = -83.820790 kcal Electronic energy + Delta-G solvation = -21964.299855 eV Core-core repulsion = 18743.046771 eV Total energy + Delta-G solvation = -3221.253084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41143 -39.35775 -38.46172 -36.16408 -35.47519 -33.46109 -31.81583 -31.53805 -28.35708 -28.31087 -27.18966 -27.03898 -23.68035 -22.63806 -21.48539 -20.71905 -19.01316 -17.99679 -17.46983 -17.37204 -16.79034 -16.56758 -16.39623 -15.87800 -15.31162 -15.07233 -14.70665 -14.43930 -14.25171 -13.90974 -13.49984 -13.42364 -13.35803 -13.23408 -13.06236 -12.84209 -12.72710 -12.56243 -12.52225 -12.44592 -12.21605 -11.92899 -11.77878 -11.34304 -11.22656 -11.05982 -10.66910 -9.54875 -9.42169 -9.31420 -8.61971 -6.36195 0.47883 0.93711 1.42796 1.48730 1.57000 1.94601 2.15434 2.24863 2.77465 3.35470 3.65932 3.70232 3.82549 3.97246 4.04873 4.28174 4.41664 4.48149 4.54503 4.61794 4.72427 4.75977 4.86061 4.93774 4.96257 5.00119 5.02084 5.07290 5.16846 5.25450 5.31918 5.33707 5.48200 5.66490 5.81838 5.97660 6.03579 6.21279 6.38288 6.61500 6.92078 6.94124 6.94997 7.22841 8.37479 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.004565 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.823156 B = 6131.790016 C = 6702.737711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.600 5.600 3 C 0.088 3.912 4 C 0.116 3.884 5 C -0.166 4.166 6 C -0.128 4.128 7 O -0.570 6.570 8 C 0.563 3.437 9 O -0.575 6.575 10 C -0.123 4.123 11 C -0.190 4.190 12 C -0.115 4.115 13 C -0.159 4.159 14 C 0.076 3.924 15 C -0.496 4.496 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.831 5.831 19 Si 0.980 3.020 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.287 0.713 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 13.652 -0.266 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C -0.034 4.034 4 C 0.075 3.925 5 C -0.224 4.224 6 C -0.186 4.186 7 O -0.378 6.378 8 C 0.354 3.646 9 O -0.456 6.456 10 C -0.126 4.126 11 C -0.210 4.210 12 C -0.133 4.133 13 C -0.178 4.178 14 C 0.074 3.926 15 C -0.525 4.525 16 H 0.100 0.900 17 C -0.176 4.176 18 N -0.457 5.457 19 Si 0.801 3.199 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.194 1.194 23 C -0.206 4.206 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.239 0.761 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.328 13.061 -0.858 13.505 hybrid contribution -0.729 -0.406 0.535 0.991 sum 2.599 12.655 -0.323 12.923 Atomic orbital electron populations 1.22132 0.77959 1.03796 1.01938 1.47592 1.07862 1.05117 1.72484 1.22409 0.98454 0.85116 0.97455 1.21592 0.84722 0.95103 0.91100 1.22340 1.00355 0.96327 1.03345 1.21691 0.99776 0.97089 1.00034 1.86607 1.32844 1.60840 1.57544 1.18636 0.86578 0.84513 0.74901 1.90626 1.15011 1.87966 1.52019 1.19635 0.97057 0.93238 1.02688 1.20602 1.01379 0.92884 1.06109 1.20872 0.95840 0.97016 0.99581 1.21419 0.95899 0.98628 1.01879 1.17899 0.92653 0.90735 0.91279 1.19771 1.01028 1.19084 1.12665 0.90023 1.26669 1.00997 0.93469 0.96469 1.69858 1.33266 1.22751 1.19837 0.85185 0.77039 0.78810 0.78858 1.17990 1.19196 1.19408 1.21743 0.96692 0.97800 1.04348 0.91688 0.88480 0.92570 0.86709 0.90232 0.91285 0.91591 0.89675 0.95450 0.92445 0.91363 0.76123 0.87970 0.86534 0.87946 0.90197 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 8.63 127.77 1.10 3.54 16 2 N -0.60 -19.23 2.53 -850.15 -2.15 -21.38 16 3 C 0.09 2.11 4.75 86.38 0.41 2.52 16 4 C 0.12 2.66 1.18 -10.79 -0.01 2.65 16 5 C -0.17 -2.63 8.82 71.98 0.63 -2.00 16 6 C -0.13 -3.91 7.40 71.98 0.53 -3.38 16 7 O -0.57 -12.68 11.82 -148.98 -1.76 -14.44 16 8 C 0.56 23.21 5.83 86.80 0.51 23.72 16 9 O -0.57 -25.57 14.14 -3.84 -0.05 -25.63 16 10 C -0.12 -5.68 5.23 -20.13 -0.11 -5.78 16 11 C -0.19 -8.96 9.61 22.70 0.22 -8.74 16 12 C -0.11 -5.44 10.01 22.18 0.22 -5.22 16 13 C -0.16 -8.21 8.65 22.77 0.20 -8.01 16 14 C 0.08 3.96 5.51 -21.32 -0.12 3.85 16 15 C -0.50 -25.24 9.04 23.47 0.21 -25.03 16 16 H 0.08 3.96 7.89 -2.91 -0.02 3.93 16 17 C 0.04 1.85 5.14 85.25 0.44 2.29 16 18 N -0.83 -42.11 11.17 21.82 0.24 -41.87 16 19 Si 0.98 36.63 29.59 68.60 2.03 38.66 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 23 C -0.19 -8.68 7.42 23.01 0.17 -8.51 16 24 H 0.06 1.78 6.64 -2.39 -0.02 1.76 16 25 H 0.10 2.14 7.13 -2.39 -0.02 2.12 16 26 H 0.06 2.03 6.10 -2.39 -0.01 2.02 16 27 H 0.11 1.84 8.07 -2.39 -0.02 1.82 16 28 H 0.08 2.09 7.50 -2.38 -0.02 2.07 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.03 1.01 6.18 -2.39 -0.01 0.99 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.17 7.30 -2.39 -0.02 2.15 16 35 H 0.39 4.85 9.04 -74.06 -0.67 4.18 16 36 H 0.10 4.64 7.96 -2.91 -0.02 4.62 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.49 6.46 -2.91 -0.02 5.47 16 39 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.13 5.26 5.13 -2.91 -0.01 5.25 16 Total: -1.00 -64.24 322.11 3.10 -61.14 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.38 Total: 31.62 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.41 Total: -28.10 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -1.91 Total: -63.24 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -1.82 Total: -40.07 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -64.24 3.10 -61.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080822512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.681 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds