Wall clock time and date at job start Mon Mar 30 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 N 1.46496 * 109.47421 * 180.02562 * 10 7 6 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 7 13 13 O 1.21682 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.46376 * 119.99803 * 180.02562 * 12 11 10 15 15 H 1.07999 * 120.00155 * 359.97438 * 14 12 11 16 16 C 1.40050 * 119.99867 * 179.97438 * 14 12 11 17 17 N 1.30676 * 119.99970 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00165 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46819 * 60.00279 * 18 16 14 20 20 H 1.48494 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47196 * 300.00784 * 18 16 14 22 22 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 23 23 C 1.38147 * 120.05382 * 359.45639 * 22 6 5 24 24 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 25 25 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 26 26 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 27 27 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 30 30 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 33 33 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 35 35 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 37 37 H 0.97008 * 119.99406 * 359.97438 * 11 10 7 38 38 H 0.96996 * 119.99788 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.97178 * 179.70593 * 22 6 5 40 40 H 1.08001 * 120.02610 * 180.24214 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 7 3.5976 7.4331 0.0031 12 6 2.8635 8.5634 0.0036 13 8 1.6484 8.4998 0.0031 14 6 3.5282 9.8676 0.0035 15 1 4.6067 9.9241 0.0035 16 6 2.7654 11.0422 0.0034 17 7 1.4604 10.9738 0.0039 18 14 3.6135 12.7066 0.0041 19 1 4.4624 12.8300 -1.2081 20 1 2.5908 13.7832 0.0045 21 1 4.4616 12.8295 1.2168 22 6 1.9212 3.6047 0.0068 23 6 1.2916 2.3751 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 4.0209 0.3798 0.0014 28 1 5.1346 2.5749 0.0019 29 1 5.6106 4.3542 1.2522 30 1 5.3545 6.1159 1.2534 31 1 4.2369 5.0535 2.1421 32 1 4.2384 5.0564 -2.1363 33 1 5.3554 6.1176 -1.2454 34 1 5.6115 4.3559 -1.2463 35 1 2.3104 6.0378 -0.8879 36 1 2.3090 6.0368 0.8921 37 1 4.5663 7.4838 0.0039 38 1 0.9322 11.7874 0.0035 39 1 1.3343 4.5114 0.0120 40 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:41 Heat of formation + Delta-G solvation = -62.522740 kcal Electronic energy + Delta-G solvation = -21204.195215 eV Core-core repulsion = 17983.865684 eV Total energy + Delta-G solvation = -3220.329531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34962 -38.74218 -37.09316 -35.38665 -32.59225 -31.68837 -31.17326 -29.11506 -27.48775 -27.02881 -26.87560 -24.99594 -22.61975 -22.04489 -19.81681 -18.86988 -18.21490 -17.31509 -16.18164 -15.83691 -15.53614 -14.99072 -14.69566 -14.45785 -14.31305 -13.79332 -13.75554 -13.08151 -13.04553 -12.99409 -12.71173 -12.37311 -12.18505 -11.98874 -11.92099 -11.32312 -11.20477 -11.12673 -11.02308 -10.89057 -10.59439 -10.53964 -10.44152 -10.21291 -10.09759 -8.96114 -8.82129 -8.05104 -7.58720 -7.43918 -6.15927 -4.61232 1.37647 1.46450 3.17047 3.18224 3.21853 3.23700 3.78814 4.12363 4.62218 4.68546 4.75385 4.85968 4.94960 4.98290 5.08285 5.23855 5.27002 5.28673 5.39893 5.42325 5.53612 5.71969 5.82355 5.85642 5.97689 6.02755 6.08405 6.16191 6.25917 6.38139 6.39177 6.48655 6.57584 6.63294 6.77160 6.78371 7.34138 7.45455 7.96637 8.14487 8.35871 9.05025 9.57979 10.63287 10.82367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.003512 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.937131 B = 7971.593005 C = 8610.166481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.153 4.153 5 C -0.076 4.076 6 C -0.095 4.095 7 C -0.034 4.034 8 C -0.135 4.135 9 C -0.135 4.135 10 C 0.144 3.856 11 N -0.765 5.765 12 C 0.555 3.445 13 O -0.583 6.583 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.078 4.078 23 C -0.204 4.204 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.379 0.621 38 H 0.268 0.732 39 H 0.135 0.865 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -18.030 0.002 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.070 3.930 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.095 4.095 7 C -0.035 4.035 8 C -0.192 4.192 9 C -0.192 4.192 10 C 0.018 3.982 11 N -0.421 5.421 12 C 0.359 3.641 13 O -0.466 6.466 14 C -0.584 4.584 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.095 4.095 23 C -0.222 4.222 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.212 0.788 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.863 -18.171 0.003 18.395 hybrid contribution 0.518 0.941 0.001 1.075 sum 3.381 -17.229 0.004 17.558 Atomic orbital electron populations 1.23027 0.78582 1.03625 1.01510 1.86029 1.21250 1.27243 1.89071 1.19026 0.92389 0.83989 0.97640 1.20334 0.91256 0.98409 1.07147 1.20762 0.99728 0.90840 0.98117 1.19718 0.93342 0.94514 1.01958 1.19696 0.95825 0.91491 0.96454 1.21853 0.98952 1.01804 0.96617 1.21855 0.98944 1.01799 0.96625 1.20977 0.93481 0.83276 1.00424 1.46166 1.08703 1.04571 1.82670 1.18184 0.86608 0.83029 0.76284 1.90590 1.14163 1.86918 1.54888 1.20851 0.93568 0.89424 1.54516 0.91566 1.25700 0.94504 1.00327 0.92651 1.70014 1.05373 1.28934 1.35457 0.86451 0.79531 0.81438 0.79406 1.19316 1.20609 1.19321 1.21169 0.94443 0.97565 0.96370 1.21245 0.99963 0.92295 1.08742 0.92652 0.92645 0.88487 0.85565 0.85482 0.92887 0.91739 0.92514 0.92511 0.91737 0.92890 0.93265 0.93264 0.78829 0.92123 0.84690 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.78 10.50 -19.41 -0.20 -3.98 16 3 C 0.11 1.45 6.69 -39.21 -0.26 1.19 16 4 C -0.15 -1.84 9.99 -39.43 -0.39 -2.23 16 5 C -0.08 -0.92 8.70 -39.61 -0.34 -1.26 16 6 C -0.09 -1.30 4.76 -104.60 -0.50 -1.80 16 7 C -0.03 -0.50 0.61 -155.66 -0.09 -0.59 16 8 C -0.13 -1.79 8.11 37.16 0.30 -1.49 16 9 C -0.13 -1.79 8.11 37.16 0.30 -1.49 16 10 C 0.14 2.75 3.22 -4.04 -0.01 2.74 16 11 N -0.76 -16.91 4.95 -61.72 -0.31 -17.22 16 12 C 0.56 15.81 7.75 -12.99 -0.10 15.71 16 13 O -0.58 -18.96 15.02 5.21 0.08 -18.88 16 14 C -0.55 -15.46 9.54 -35.63 -0.34 -15.80 16 15 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 16 C 0.09 2.46 5.50 -17.36 -0.10 2.37 16 17 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 18 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.08 -1.11 8.97 -39.61 -0.36 -1.47 16 23 C -0.20 -2.63 9.04 -39.43 -0.36 -2.98 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.13 1.27 7.09 -52.49 -0.37 0.90 16 29 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 30 H 0.06 0.88 6.86 -51.93 -0.36 0.52 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.88 6.86 -51.93 -0.36 0.52 16 34 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 35 H 0.05 1.01 7.52 -51.93 -0.39 0.62 16 36 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 37 H 0.38 7.37 6.14 -40.82 -0.25 7.12 16 38 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 39 H 0.14 2.07 5.89 -52.48 -0.31 1.76 16 40 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -34.67 326.86 -6.69 -41.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.55 Total: 7.08 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.26 Total: -5.91 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.35 Total: -39.77 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.13 Total: -22.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.67 -6.69 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.164 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds